HHsearch alignment for GI: 254780901 and conserved domain: COG1107

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair].
Probab=99.48  E-value=1.5e-11  Score=110.23  Aligned_cols=341  Identities=23%  Similarity=0.276  Sum_probs=191.6

Q ss_pred             HHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH----CC--CCEEEEECCCCC---CCCCCC-----
Q ss_conf             5614879999999999977997999940788615289999999997----69--947998078743---366889-----
Q gi|254780901|r   73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSH----CS--VNANMYIPDRIV---DGYGPN-----  138 (600)
Q Consensus        73 ~~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~----~g--~~v~~~IP~R~~---eGYGl~-----  138 (600)
T Consensus       324 ~L~p~m~~vAk~irrAV~egRPIiiRHHaDaDG~~agvAlE~AilplI~d~~~d~DAeyh~~KRrPskAPfYeleDvtrD  403 (715)
T COG1107         324 ALKPDMVDVAKEIRRAVLEGRPIIIRHHADADGYCAGVALEKAILPLIEDVHPDEDAEYHLFKRRPSKAPFYELEDVTRD  403 (715)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEHHHHHHH
T ss_conf             75188999999999987347836996456766520026689988999987279802456776338666873037766646


Q ss_pred             -HHHHHHHHHCC--CCEEEEECCCCC--CHHHHHHHHHCCCCEEEECCCCCCCCCCC--CEEEECCCCCCCCCCCCCHHH
Q ss_conf             -78988742026--868999648876--23455555417982799615447655567--256523788886433443047
Q gi|254780901|r  139 -PSLMEKFINEG--AQLIITVDCGST--SYDALQYATNQGIDVIVIDHHQVKSEEIP--AYALVNPNRLDDLSGQGHLCA  211 (600)
Q Consensus       139 -~~~i~~~~~~g--~~LiItvD~Gi~--~~e~i~~a~~~GidvIVtDHH~~~~~~p~--a~aivNP~~~~~~~p~~~l~g  211 (600)
T Consensus       404 l~~aLED~~RhGqKlPL~VlvDnGsTeEDipA~~~~k~Ygi~ivVVDHH~Pde~vvD~yvd~HVNPy~vGgd~~i---ta  480 (715)
T COG1107         404 LNFALEDAHRHGQKLPLLVLVDNGSTEEDIPAIKQLKAYGIDIVVVDHHYPDEAVVDEYVDVHVNPYLVGGDSNI---TA  480 (715)
T ss_pred             HHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCHHHCCCCCCC---CH
T ss_conf             889999999608756569997689864462789888754997899717889603334566631275440787676---61


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHH--------HHHHHHHHHHCCCCCHHHHH
Q ss_conf             8899999999999702148876407799999998775420111144411899--------99878877516887435789
Q gi|254780901|r  212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAY--------VVKGLMVARRQGNPGLKALI  283 (600)
Q Consensus       212 aGvaf~l~~al~~~l~~~~~~~~~~~l~~~ldlvaiGTvaD~vpL~~eNR~l--------vk~GL~~l~~~~~~gl~~L~  283 (600)
T Consensus       481 G~----L~vEiArmInp~v----~---d~ikHLPaVA~~gD~a~ape~~~Ylela~~~gyd~e~L~~ia~----------  539 (715)
T COG1107         481 GM----LCVEIARMINPEV----E---DDIKHLPAVAGVGDRAKAPEAEQYLELAAERGYDREDLEKIAL----------  539 (715)
T ss_pred             HH----HHHHHHHHCCCCH----H---HHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH----------
T ss_conf             37----8999999719244----5---5653374113424654574678999988762789899999999----------


Q ss_pred             HHHCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCEEEE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             870888642423456667743062333121222210020-3425899999999998999999999999999999987521
Q gi|254780901|r  284 ERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLI-SDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC  362 (600)
Q Consensus       284 ~~~~~~~~i~~~di~f~iaPrINAaGRl~~a~~av~lL~-~~d~~~a~~la~~L~~lN~~Rk~~e~~i~~~a~~~~~~~~  362 (600)
T Consensus       540 -av----d~EaFylrf~-----~gr~ii~------DIL~~~gd~~rH~~Lvd~L~~q~---~~~ve~qL~aa~~~vk~~~  600 (715)
T COG1107         540 -AV----DYEAFYLRFM-----DGRGIIA------DILGTTGDADRHRELVDHLYEQA---KEAVEEQLRAALPHVKSER  600 (715)
T ss_pred             -HH----HHHHHHHHHC-----CCCHHHH------HHHHCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCEEE
T ss_conf             -87----6798886516-----6540799------98631353257899999999999---9999999997641343266


Q ss_pred             CCCCCCCEE--EEECCCC-------CHH-HHHHHHHHHHHHHHC-EEEEEEECCCCEEEEEEECCCC-CCHHHHHHHHCC
Q ss_conf             124347502--6205785-------812-222227899884201-0799886379837999864898-618888885303
Q gi|254780901|r  363 DDIQQASVI--VVEGDRW-------HPG-IVGLLAARLKEKFGR-PSFAISFEEDGKGIGSGRSIEG-FDIGKMVSFAVE  430 (600)
Q Consensus       363 ~~~~~~~~i--vv~~~~w-------h~G-ViGIVAsrL~e~y~k-P~iv~s~~~dg~~kGS~RSi~g-~~l~~~l~~~~~  430 (600)
T Consensus       601 --l~n-Gi~~~tlDVE~yahkFtfP~pGk~~g~~HD~~~q~~g~~pivtlgyGpD---f~viRa~d~~~dl~~IV~~l~e  674 (715)
T COG1107         601 --LPN-GIAFNTLDVENYAHKFTFPPPGKLSGEVHDRLVQKYGEDPIVTLGYGPD---FAVIRATDAVFDLNRIVKELEE  674 (715)
T ss_pred             --CCC-CEEEEEEEHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCC---EEEEECCCCCCCHHHHHHHHHH
T ss_conf             --258-6378986253413456579986442266533443047775256311786---1477046641458899999975


Q ss_pred             C--CCCCCCCCCCCCCCEEECCCCHHHHHHHHHH
Q ss_conf             3--5301156532223146422215889999999
Q gi|254780901|r  431 E--GILVKGGGHAMAAGLTVERVNFGRLCDFFQK  462 (600)
Q Consensus       431 ~--~ll~~~GGH~~AaG~ti~~~~l~~f~~~l~~  462 (600)
T Consensus       675 e~p~a~v~ggGh~~~Gsikfveg~R~~Vl~a~~e  708 (715)
T COG1107         675 ELPEAGVDGGGHETAGSIKFVEGLRKEVLGAFAE  708 (715)
T ss_pred             HCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHH
T ss_conf             4510244789833303027876535557999999