HHsearch alignment for GI: 254780901 and conserved domain: COG1107
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair].
Probab=99.48 E-value=1.5e-11 Score=110.23 Aligned_cols=341 Identities=23% Similarity=0.276 Sum_probs=191.6
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH----CC--CCEEEEECCCCC---CCCCCC-----
Q ss_conf 5614879999999999977997999940788615289999999997----69--947998078743---366889-----
Q gi|254780901|r 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSH----CS--VNANMYIPDRIV---DGYGPN----- 138 (600)
Q Consensus 73 ~~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~----~g--~~v~~~IP~R~~---eGYGl~----- 138 (600)
T Consensus 324 ~L~p~m~~vAk~irrAV~egRPIiiRHHaDaDG~~agvAlE~AilplI~d~~~d~DAeyh~~KRrPskAPfYeleDvtrD 403 (715)
T COG1107 324 ALKPDMVDVAKEIRRAVLEGRPIIIRHHADADGYCAGVALEKAILPLIEDVHPDEDAEYHLFKRRPSKAPFYELEDVTRD 403 (715)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEHHHHHHH
T ss_conf 75188999999999987347836996456766520026689988999987279802456776338666873037766646
Q ss_pred -HHHHHHHHHCC--CCEEEEECCCCC--CHHHHHHHHHCCCCEEEECCCCCCCCCCC--CEEEECCCCCCCCCCCCCHHH
Q ss_conf -78988742026--868999648876--23455555417982799615447655567--256523788886433443047
Q gi|254780901|r 139 -PSLMEKFINEG--AQLIITVDCGST--SYDALQYATNQGIDVIVIDHHQVKSEEIP--AYALVNPNRLDDLSGQGHLCA 211 (600)
Q Consensus 139 -~~~i~~~~~~g--~~LiItvD~Gi~--~~e~i~~a~~~GidvIVtDHH~~~~~~p~--a~aivNP~~~~~~~p~~~l~g 211 (600)
T Consensus 404 l~~aLED~~RhGqKlPL~VlvDnGsTeEDipA~~~~k~Ygi~ivVVDHH~Pde~vvD~yvd~HVNPy~vGgd~~i---ta 480 (715)
T COG1107 404 LNFALEDAHRHGQKLPLLVLVDNGSTEEDIPAIKQLKAYGIDIVVVDHHYPDEAVVDEYVDVHVNPYLVGGDSNI---TA 480 (715)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCHHHCCCCCCC---CH
T ss_conf 889999999608756569997689864462789888754997899717889603334566631275440787676---61
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHH--------HHHHHHHHHHCCCCCHHHHH
Q ss_conf 8899999999999702148876407799999998775420111144411899--------99878877516887435789
Q gi|254780901|r 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAY--------VVKGLMVARRQGNPGLKALI 283 (600)
Q Consensus 212 aGvaf~l~~al~~~l~~~~~~~~~~~l~~~ldlvaiGTvaD~vpL~~eNR~l--------vk~GL~~l~~~~~~gl~~L~ 283 (600)
T Consensus 481 G~----L~vEiArmInp~v----~---d~ikHLPaVA~~gD~a~ape~~~Ylela~~~gyd~e~L~~ia~---------- 539 (715)
T COG1107 481 GM----LCVEIARMINPEV----E---DDIKHLPAVAGVGDRAKAPEAEQYLELAAERGYDREDLEKIAL---------- 539 (715)
T ss_pred HH----HHHHHHHHCCCCH----H---HHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH----------
T ss_conf 37----8999999719244----5---5653374113424654574678999988762789899999999----------
Q ss_pred HHHCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCEEEE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 870888642423456667743062333121222210020-3425899999999998999999999999999999987521
Q gi|254780901|r 284 ERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLI-SDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 (600)
Q Consensus 284 ~~~~~~~~i~~~di~f~iaPrINAaGRl~~a~~av~lL~-~~d~~~a~~la~~L~~lN~~Rk~~e~~i~~~a~~~~~~~~ 362 (600)
T Consensus 540 -av----d~EaFylrf~-----~gr~ii~------DIL~~~gd~~rH~~Lvd~L~~q~---~~~ve~qL~aa~~~vk~~~ 600 (715)
T COG1107 540 -AV----DYEAFYLRFM-----DGRGIIA------DILGTTGDADRHRELVDHLYEQA---KEAVEEQLRAALPHVKSER 600 (715)
T ss_pred -HH----HHHHHHHHHC-----CCCHHHH------HHHHCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCEEE
T ss_conf -87----6798886516-----6540799------98631353257899999999999---9999999997641343266
Q ss_pred CCCCCCCEE--EEECCCC-------CHH-HHHHHHHHHHHHHHC-EEEEEEECCCCEEEEEEECCCC-CCHHHHHHHHCC
Q ss_conf 124347502--6205785-------812-222227899884201-0799886379837999864898-618888885303
Q gi|254780901|r 363 DDIQQASVI--VVEGDRW-------HPG-IVGLLAARLKEKFGR-PSFAISFEEDGKGIGSGRSIEG-FDIGKMVSFAVE 430 (600)
Q Consensus 363 ~~~~~~~~i--vv~~~~w-------h~G-ViGIVAsrL~e~y~k-P~iv~s~~~dg~~kGS~RSi~g-~~l~~~l~~~~~ 430 (600)
T Consensus 601 --l~n-Gi~~~tlDVE~yahkFtfP~pGk~~g~~HD~~~q~~g~~pivtlgyGpD---f~viRa~d~~~dl~~IV~~l~e 674 (715)
T COG1107 601 --LPN-GIAFNTLDVENYAHKFTFPPPGKLSGEVHDRLVQKYGEDPIVTLGYGPD---FAVIRATDAVFDLNRIVKELEE 674 (715)
T ss_pred --CCC-CEEEEEEEHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCC---EEEEECCCCCCCHHHHHHHHHH
T ss_conf --258-6378986253413456579986442266533443047775256311786---1477046641458899999975
Q ss_pred C--CCCCCCCCCCCCCCEEECCCCHHHHHHHHHH
Q ss_conf 3--5301156532223146422215889999999
Q gi|254780901|r 431 E--GILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462 (600)
Q Consensus 431 ~--~ll~~~GGH~~AaG~ti~~~~l~~f~~~l~~ 462 (600)
T Consensus 675 e~p~a~v~ggGh~~~Gsikfveg~R~~Vl~a~~e 708 (715)
T COG1107 675 ELPEAGVDGGGHETAGSIKFVEGLRKEVLGAFAE 708 (715)
T ss_pred HCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHH
T ss_conf 4510244789833303027876535557999999