HHsearch alignment for GI: 254780901 and conserved domain: COG3887

>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms].
Probab=98.27  E-value=0.00093  Score=49.32  Aligned_cols=301  Identities=16%  Similarity=0.239  Sum_probs=152.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEC--CCCCHHHHHHHHHHHHHHCCCCEEEEE-CCCCCCCCCCCHHHHHHHHH--CC
Q ss_conf             14879999999999977997999940--788615289999999997699479980-78743366889789887420--26
Q gi|254780901|r   75 LTDCDKAARRIVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNANMYI-PDRIVDGYGPNPSLMEKFIN--EG  149 (600)
Q Consensus        75 l~dm~~A~~ri~~ai~~~ekI~I~gD--yD~DGitstail~~~L~~~g~~v~~~I-P~R~~eGYGl~~~~i~~~~~--~g  149 (600)
T Consensus       323 aRvis~al---~d~i~e~d~VfImGHk~pDmDalGsAig~~~~A~~~~~~a~~v~dp~~~~p---dveRai~~i~~~~e~  396 (655)
T COG3887         323 ARVISTAL---SDIIKESDNVFIMGHKFPDMDALGSAIGMQKFASMNNKEAFAVLDPEDMSP---DVERAINEIEKNSEG  396 (655)
T ss_pred             HHHHHHHH---HHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCH---HHHHHHHHHHHCCHH
T ss_conf             99999999---999852274899816888757777899999999734656279977222684---699999999726205


Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCC-------CCCEEEECCCCCCCCCCCCCH-----HHHHHHHH
Q ss_conf             868999648876234555554179827996154476555-------672565237888864334430-----47889999
Q gi|254780901|r  150 AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE-------IPAYALVNPNRLDDLSGQGHL-----CAAGVVFL  217 (600)
Q Consensus       150 ~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~~~~~~-------p~a~aivNP~~~~~~~p~~~l-----~gaGvaf~  217 (600)
T Consensus       397 ~~~fit~~~------A~~-l~t~~sLLviVDt~k~s~vl~~~~~~~~~kvVViDHHRR~e~f~~n~~l~YiEsyASStsE  469 (655)
T COG3887         397 KTRFITPSD------AME-LSTERSLLVIVDTHKPSLVLNEEFLDKFEKVVVIDHHRRDEDFISNPLLVYIESYASSTSE  469 (655)
T ss_pred             HHEECCHHH------HHH-CCCCCCEEEEEECCCCCEECCHHHHHHHCEEEEEECCCCCCCCCCCHHHHHHCCCCCCHHH
T ss_conf             432355999------863-2687708999936882000389999763028997344355443234277631367651889


Q ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCC-H--HHHHHHHCC--CC-C
Q ss_conf             9999999702148876407799999998775420111144411899998788775168874-3--578987088--86-4
Q gi|254780901|r  218 VLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPG-L--KALIERVNI--SS-P  291 (600)
Q Consensus       218 l~~al~~~l~~~~~~~~~~~l~~~ldlvaiGTvaD~vpL~~eNR~lvk~GL~~l~~~~~~g-l--~~L~~~~~~--~~-~  291 (600)
T Consensus       470 LV---------------------------------------------TEliqyq~~~~kl~~ieAt~Ll--AGI~vDTKn  502 (655)
T COG3887         470 LV---------------------------------------------TELIQYQPKKQKLSPIEATALL--AGIIVDTKN  502 (655)
T ss_pred             HH---------------------------------------------HHHHHHCCHHCCCCHHHHHHHH--HCEEEECCC
T ss_conf             99---------------------------------------------9999717431132578999987--325882365


Q ss_pred             C--CHHHHHHHHHHHCCHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             2--42345666774306233312122221002034258999999999989999999999999999999875211243475
Q gi|254780901|r  292 I--TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS  369 (600)
Q Consensus       292 i--~~~di~f~iaPrINAaGRl~~a~~av~lL~~~d~~~a~~la~~L~~lN~~Rk~~e~~i~~~a~~~~~~~~~~~~~~~  369 (600)
T Consensus       503 Ft~rTgsRTFdAAsyLRs~Ga--Dt-iliq~~lk~d~e----------~y-~k~~el----I~~~~---------~~~~g  555 (655)
T COG3887         503 FTLRTGSRTFDAASYLRSRGA--DT-ILIQKFLKTDFE----------EY-IKRSEL----IENAR---------VYKDG  555 (655)
T ss_pred             CEEECCCCEEHHHHHHHHCCC--CH-HHHHHHHHHHHH----------HH-HHHHHH----HHHHH---------CCCCC
T ss_conf             234036511158999986387--67-999999876199----------99-999999----98777---------10697


Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHH----HH-CEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             026205785812222227899884----20-1079988637983799986489861888888530335301156532223
Q gi|254780901|r  370 VIVVEGDRWHPGIVGLLAARLKEK----FG-RPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAA  444 (600)
Q Consensus       370 ~ivv~~~~wh~GViGIVAsrL~e~----y~-kP~iv~s~~~dg~~kGS~RSi~g~~l~~~l~~~~~~~ll~~~GGH~~Aa  444 (600)
T Consensus       556 iaiA~~~~-~e~~~~viiaqAAD~lLsm~Gv~ASFVvak~~~~~i~ISaRS~g~iNVQ~ImEaL-------GGGGH~tnA  627 (655)
T COG3887         556 IAIATGSK-DEAYSNVIIAQAADTLLSMAGVEASFVVAKRTDGLISISARSLGKINVQVIMEAL-------GGGGHLTNA  627 (655)
T ss_pred             EEEEECCH-HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHH-------CCCCHHHHH
T ss_conf             69995335-5431088999989988513172278999983697599972025774088999873-------686316677


Q ss_pred             CEEECCCCHHHHHHHHHHHHHHHCCH
Q ss_conf             14642221588999999999862264
Q gi|254780901|r  445 GLTVERVNFGRLCDFFQKFAHNIVPA  470 (600)
Q Consensus       445 G~ti~~~~l~~f~~~l~~~~~~~~~~  470 (600)
T Consensus       628 Atql~~~t~~ea~~~L~~aI~~~~~e  653 (655)
T COG3887         628 ATQLKDVTLEEALEQLQEAIDEYLEE  653 (655)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             77511364999999999999998505