HHsearch alignment for GI: 254780901 and conserved domain: COG3887
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms].
Probab=98.27 E-value=0.00093 Score=49.32 Aligned_cols=301 Identities=16% Similarity=0.239 Sum_probs=152.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEC--CCCCHHHHHHHHHHHHHHCCCCEEEEE-CCCCCCCCCCCHHHHHHHHH--CC
Q ss_conf 14879999999999977997999940--788615289999999997699479980-78743366889789887420--26
Q gi|254780901|r 75 LTDCDKAARRIVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNANMYI-PDRIVDGYGPNPSLMEKFIN--EG 149 (600)
Q Consensus 75 l~dm~~A~~ri~~ai~~~ekI~I~gD--yD~DGitstail~~~L~~~g~~v~~~I-P~R~~eGYGl~~~~i~~~~~--~g 149 (600)
T Consensus 323 aRvis~al---~d~i~e~d~VfImGHk~pDmDalGsAig~~~~A~~~~~~a~~v~dp~~~~p---dveRai~~i~~~~e~ 396 (655)
T COG3887 323 ARVISTAL---SDIIKESDNVFIMGHKFPDMDALGSAIGMQKFASMNNKEAFAVLDPEDMSP---DVERAINEIEKNSEG 396 (655)
T ss_pred HHHHHHHH---HHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCH---HHHHHHHHHHHCCHH
T ss_conf 99999999---999852274899816888757777899999999734656279977222684---699999999726205
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCC-------CCCEEEECCCCCCCCCCCCCH-----HHHHHHHH
Q ss_conf 868999648876234555554179827996154476555-------672565237888864334430-----47889999
Q gi|254780901|r 150 AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE-------IPAYALVNPNRLDDLSGQGHL-----CAAGVVFL 217 (600)
Q Consensus 150 ~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~~~~~~-------p~a~aivNP~~~~~~~p~~~l-----~gaGvaf~ 217 (600)
T Consensus 397 ~~~fit~~~------A~~-l~t~~sLLviVDt~k~s~vl~~~~~~~~~kvVViDHHRR~e~f~~n~~l~YiEsyASStsE 469 (655)
T COG3887 397 KTRFITPSD------AME-LSTERSLLVIVDTHKPSLVLNEEFLDKFEKVVVIDHHRRDEDFISNPLLVYIESYASSTSE 469 (655)
T ss_pred HHEECCHHH------HHH-CCCCCCEEEEEECCCCCEECCHHHHHHHCEEEEEECCCCCCCCCCCHHHHHHCCCCCCHHH
T ss_conf 432355999------863-2687708999936882000389999763028997344355443234277631367651889
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCC-H--HHHHHHHCC--CC-C
Q ss_conf 9999999702148876407799999998775420111144411899998788775168874-3--578987088--86-4
Q gi|254780901|r 218 VLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPG-L--KALIERVNI--SS-P 291 (600)
Q Consensus 218 l~~al~~~l~~~~~~~~~~~l~~~ldlvaiGTvaD~vpL~~eNR~lvk~GL~~l~~~~~~g-l--~~L~~~~~~--~~-~ 291 (600)
T Consensus 470 LV---------------------------------------------TEliqyq~~~~kl~~ieAt~Ll--AGI~vDTKn 502 (655)
T COG3887 470 LV---------------------------------------------TELIQYQPKKQKLSPIEATALL--AGIIVDTKN 502 (655)
T ss_pred HH---------------------------------------------HHHHHHCCHHCCCCHHHHHHHH--HCEEEECCC
T ss_conf 99---------------------------------------------9999717431132578999987--325882365
Q ss_pred C--CHHHHHHHHHHHCCHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 2--42345666774306233312122221002034258999999999989999999999999999999875211243475
Q gi|254780901|r 292 I--TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 (600)
Q Consensus 292 i--~~~di~f~iaPrINAaGRl~~a~~av~lL~~~d~~~a~~la~~L~~lN~~Rk~~e~~i~~~a~~~~~~~~~~~~~~~ 369 (600)
T Consensus 503 Ft~rTgsRTFdAAsyLRs~Ga--Dt-iliq~~lk~d~e----------~y-~k~~el----I~~~~---------~~~~g 555 (655)
T COG3887 503 FTLRTGSRTFDAASYLRSRGA--DT-ILIQKFLKTDFE----------EY-IKRSEL----IENAR---------VYKDG 555 (655)
T ss_pred CEEECCCCEEHHHHHHHHCCC--CH-HHHHHHHHHHHH----------HH-HHHHHH----HHHHH---------CCCCC
T ss_conf 234036511158999986387--67-999999876199----------99-999999----98777---------10697
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH----HH-CEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 026205785812222227899884----20-1079988637983799986489861888888530335301156532223
Q gi|254780901|r 370 VIVVEGDRWHPGIVGLLAARLKEK----FG-RPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAA 444 (600)
Q Consensus 370 ~ivv~~~~wh~GViGIVAsrL~e~----y~-kP~iv~s~~~dg~~kGS~RSi~g~~l~~~l~~~~~~~ll~~~GGH~~Aa 444 (600)
T Consensus 556 iaiA~~~~-~e~~~~viiaqAAD~lLsm~Gv~ASFVvak~~~~~i~ISaRS~g~iNVQ~ImEaL-------GGGGH~tnA 627 (655)
T COG3887 556 IAIATGSK-DEAYSNVIIAQAADTLLSMAGVEASFVVAKRTDGLISISARSLGKINVQVIMEAL-------GGGGHLTNA 627 (655)
T ss_pred EEEEECCH-HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHH-------CCCCHHHHH
T ss_conf 69995335-5431088999989988513172278999983697599972025774088999873-------686316677
Q ss_pred CEEECCCCHHHHHHHHHHHHHHHCCH
Q ss_conf 14642221588999999999862264
Q gi|254780901|r 445 GLTVERVNFGRLCDFFQKFAHNIVPA 470 (600)
Q Consensus 445 G~ti~~~~l~~f~~~l~~~~~~~~~~ 470 (600)
T Consensus 628 Atql~~~t~~ea~~~L~~aI~~~~~e 653 (655)
T COG3887 628 ATQLKDVTLEEALEQLQEAIDEYLEE 653 (655)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 77511364999999999999998505