HHsearch alignment for GI: 254780901 and conserved domain: PTZ00254

>PTZ00254 40S ribosomal protein SA; Provisional.
Probab=93.15  E-value=0.84  Score=26.22  Aligned_cols=89  Identities=26%  Similarity=0.344  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEEC
Q ss_conf             79999999999977997999940788615289999999997699479980787433668897898874202686899964
Q gi|254780901|r   78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD  157 (600)
Q Consensus        78 m~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD  157 (600)
T Consensus        58 L~~Aa~~i-~~i~~~~~Il~V~t---r~~~q~aV~-kfA~~tG~---~~i~~Rw~pGtlTN-~i~~~f~--eP~lliV~D  126 (242)
T PTZ00254         58 IKLAARVI-AAVENPADVVVVSS---RPYGQRAIL-KFSQYTGA---SFIAGRFTPGTFTN-QIQKKFQ--EPRLLIVTD  126 (242)
T ss_pred             HHHHHHHH-HHHCCCCCEEEEEC---CHHHHHHHH-HHHHHHCC---CEEECCCCCCCCCC-HHHHCCC--CCCEEEEEC
T ss_conf             99999999-98647997799983---889879999-99999799---42405127866468-7665246--888899966


Q ss_pred             CCCCCHHHHHHHHHCCCCEEE
Q ss_conf             887623455555417982799
Q gi|254780901|r  158 CGSTSYDALQYATNQGIDVIV  178 (600)
Q Consensus       158 ~Gi~~~e~i~~a~~~GidvIV  178 (600)
T Consensus       127 P~-~d~~AV~EA~~~nIPvIa  146 (242)
T PTZ00254        127 PR-TDHQAIREASYVNIPVIA  146 (242)
T ss_pred             CC-CCHHHHHHHHHCCCCEEE
T ss_conf             75-440899999985998898