HHsearch alignment for GI: 254780901 and conserved domain: PTZ00254
>PTZ00254 40S ribosomal protein SA; Provisional.
Probab=93.15 E-value=0.84 Score=26.22 Aligned_cols=89 Identities=26% Similarity=0.344 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEEC
Q ss_conf 79999999999977997999940788615289999999997699479980787433668897898874202686899964
Q gi|254780901|r 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 (600)
Q Consensus 78 m~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD 157 (600)
T Consensus 58 L~~Aa~~i-~~i~~~~~Il~V~t---r~~~q~aV~-kfA~~tG~---~~i~~Rw~pGtlTN-~i~~~f~--eP~lliV~D 126 (242)
T PTZ00254 58 IKLAARVI-AAVENPADVVVVSS---RPYGQRAIL-KFSQYTGA---SFIAGRFTPGTFTN-QIQKKFQ--EPRLLIVTD 126 (242)
T ss_pred HHHHHHHH-HHHCCCCCEEEEEC---CHHHHHHHH-HHHHHHCC---CEEECCCCCCCCCC-HHHHCCC--CCCEEEEEC
T ss_conf 99999999-98647997799983---889879999-99999799---42405127866468-7665246--888899966
Q ss_pred CCCCCHHHHHHHHHCCCCEEE
Q ss_conf 887623455555417982799
Q gi|254780901|r 158 CGSTSYDALQYATNQGIDVIV 178 (600)
Q Consensus 158 ~Gi~~~e~i~~a~~~GidvIV 178 (600)
T Consensus 127 P~-~d~~AV~EA~~~nIPvIa 146 (242)
T PTZ00254 127 PR-TDHQAIREASYVNIPVIA 146 (242)
T ss_pred CC-CCHHHHHHHHHCCCCEEE
T ss_conf 75-440899999985998898