HHsearch alignment for GI: 254780901 and conserved domain: cd00079
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process.
Probab=90.62 E-value=1.5 Score=24.16 Aligned_cols=77 Identities=9% Similarity=0.174 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEE
Q ss_conf 87999999999997799799994078861528999999999769947998078743366889789887420268689996
Q gi|254780901|r 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 (600)
Q Consensus 77 dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItv 156 (600)
T Consensus 13 K~~~l~~~i~~~~~~~~kviIF~----~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~--~~R~~~~~~F~~~~~~ilv~t 85 (131)
T cd00079 13 KLEALLELLKEHLKKGGKVLIFC----PSKKMLDELAELLRKPGIKVAALHGDG-SQ--EEREEVLKDFREGEIVVLVAT 85 (131)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEE----CCHHHHHHHHHHHHHCCCCEEEEECCC-CH--HHHHHHHHHHHHHCEEEEEEE
T ss_conf 99999999999997899099997----889999999999955899899998999-99--999999999775401048875
Q ss_pred CCCC
Q ss_conf 4887
Q gi|254780901|r 157 DCGS 160 (600)
Q Consensus 157 D~Gi 160 (600)
T Consensus 86 ~~~~ 89 (131)
T cd00079 86 DVIA 89 (131)
T ss_pred ECCE
T ss_conf 1120