HHsearch alignment for GI: 254780901 and conserved domain: cd01539
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=91.36 E-value=0.77 Score=26.53 Aligned_cols=73 Identities=11% Similarity=0.145 Sum_probs=46.5
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCC-CHHHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf 99976994799807874336688978988742026868999648876-234555554179827996154476555
Q gi|254780901|r 115 FLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGST-SYDALQYATNQGIDVIVIDHHQVKSEE 188 (600)
Q Consensus 115 ~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~-~~e~i~~a~~~GidvIVtDHH~~~~~~ 188 (600)
T Consensus 24 ~a~e~g~~v~~~~~da~~D-~~~Q~~~Ie~~I~qgvD~Iii~p~d~~~~~~~i~~A~~agIPVI~~d~~~~~~~~ 97 (303)
T cd01539 24 IQKENGGKVEFTFYDAKNN-QSTQNEQIDTALAKGVDLLAVNLVDPTAAQTVINKAKQKNIPVIFFNREPEEEDI 97 (303)
T ss_pred HHHHHCCCEEEEEECCCCC-HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHC
T ss_conf 9998599579997078789-9999999999997599999994687334899999999669849998787661220