HHsearch alignment for GI: 254780901 and conserved domain: pfam06506
>pfam06506 PrpR_N Propionate catabolism activator. This domain is found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate.
Probab=90.29 E-value=1.6 Score=24.03 Aligned_cols=132 Identities=14% Similarity=0.169 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHCCCCHHHCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf 98899999988199999999999678897898866196677718995561487999999999997799799994078861
Q gi|254780901|r 26 GINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105 (600)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~a~iL~~Rgi~~~~~~~fL~p~l~~l~~dP~~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DG 105 (600)
T Consensus 17 ~l~~av~~a~~~~--~~g~dvIIsRGgta~~ir~~~~iPVv~I---~~s~~Dil~al~---~a~~~~~kiavvg~~~~-- 86 (169)
T pfam06506 17 GLEDAVEVARALV--AEGVDVIISRGGTAAYLRDRLSVPVVEI---KVSGFDLLRALA---RARRYGGRIGLVGYENI-- 86 (169)
T ss_pred CHHHHHHHHHHHH--HCCCCEEEECCHHHHHHHHHCCCCEEEE---ECCHHHHHHHHH---HHHHHCCCEEEEECCCC--
T ss_conf 7899999999999--7799599989658999998589988998---278869999999---99975897999927630--
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 528999999999769947998078743366889789887420268689996488762345555541798279961
Q gi|254780901|r 106 AASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180 (600)
Q Consensus 106 itstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtD 180 (600)
T Consensus 87 -~~~--~~~~~~il~~~i~~~~~~~~~e----~~~~i~~l~~~G~~vvV----G--~~~~~~~A~~~Gl~~vli~ 148 (169)
T pfam06506 87 -IPG--LKALSELLGLDIVQRAYQSEEE----ARAAVKELKAQGIKVIV----G--DGLVCDLAEQAGLQGVLIY 148 (169)
T ss_pred -CHH--HHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHHCCCEEEE----C--CCHHHHHHHHCCCCEEEEE
T ss_conf -368--9999999699359999668899----99999999986995998----5--8289999998399579996