HHsearch alignment of GI: 254780901 and MMDB domain: 2zvf_A_27-171

>2zvf_A (A:27-171) Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=96.18  E-value=0.13  Score=32.00  Aligned_cols=138  Identities=15%  Similarity=0.106  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCEEEEEEECCC
Q ss_conf             89999999999899999999999999999998752112434750262057858122222278998842010799886379
Q gi|254780901|r  327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED  406 (600)
Q Consensus       327 ~~a~~la~~L~~lN~~Rk~~e~~i~~~a~~~~~~~~~~~~~~~~ivv~~~~wh~GViGIVAsrL~e~y~kP~iv~s~~~d  406 (600)
                      +....+.+++..++++.+.+..++.....+.+.....+. +...+++...+...-.+-.+|..+.+++  |+++++..++
T Consensus         6 ~~v~~l~~e~k~l~k~~~~l~~~l~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~~~~   82 (145)
T 2zvf_A            6 KTVERFFEEWKDQRKEIERLKSVIADLWADILXERAEEF-DSXKVVAEVVDADXQALQKLAERLAEKG--AVGCLXAKGE   82 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEES-SSCEEEEEECSCCHHHHHHHHHHHHHTT--EEEEEEEECS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEECCCHHHHHHHHHHHHCCC--CEEEEEECCC
T ss_conf             999999999999999999999999998788898654503-7950688662589899999999984347--7488761268


Q ss_pred             CEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEE-CCCCHHHHHHHHHHHHHHHC
Q ss_conf             837999864898618888885303353011565322231464-22215889999999998622
Q gi|254780901|r  407 GKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTV-ERVNFGRLCDFFQKFAHNIV  468 (600)
Q Consensus       407 g~~kGS~RSi~g~~l~~~l~~~~~~~ll~~~GGH~~AaG~ti-~~~~l~~f~~~l~~~~~~~~  468 (600)
                      +....=+....+++..+.+...... +-.++||-+.-|-=+. ..++++++.+.+.+++.+.+
T Consensus        83 ~k~~~~~~~~~~l~a~~~~k~~~~~-~~GkGGGk~~~AQG~~~~~~~l~~~l~~~~~~l~~~L  144 (145)
T 2zvf_A           83 GKVFVVTFSGQKYDARELLREIGRV-AKGSGGGRKDVAQGAVQQLLDREEXLDVIFRFLSEHE  144 (145)
T ss_dssp             SSEEEEEEESSSSCHHHHHHHHHHH-HTEECCBCSSEEEEEESSCCCHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH-CCCCCCCCHHHEEECCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             8515886067777799999999987-4998689658704379986689999999999998725