HHsearch alignment of GI: 254780901 and MMDB domain: 3h5l_A_140-279_378-419
>3h5l_A (A:140-279,A:378-419) Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=90.08 E-value=1.5 Score=23.83 Aligned_cols=100 Identities=7% Similarity=-0.010 Sum_probs=70.1
Q ss_pred HHHHHHHHHH---HCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEE
Q ss_conf 9999999999---7799799994078861528999999999769947998078743366889789887420268689996
Q gi|254780901|r 80 KAARRIVQAI---YNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 (600)
Q Consensus 80 ~A~~ri~~ai---~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItv 156 (600)
....++...+ ...++|.|+.+-|.=|-+...-+...++..|.++.+.+. +..+---....+.++++.+++.||++
T Consensus 10 ~~~~~~~~~l~~~~g~kkVaii~~d~~yG~~~~~~f~~~l~~~G~~Vv~~~~--~~~~~~d~~~~i~~i~~a~~d~Viv~ 87 (182)
T 3h5l_A 10 KFLKDIEDNGEFSRPNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFET--VAIPVSDWGPTLAKLRADPPAVIVVT 87 (182)
T ss_dssp HHHHHHHHTTSCCCSSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEE--CCSSCSCCHHHHHHHHHSCCSEEEEC
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEECCC--CCCCCCCCHHHHHHHHCCCCCEEEEE
T ss_conf 9888888777632688789999537437789999999999973252221012--55321210046666530499789997
Q ss_pred CC-CCCCHHHHHHHHHCCCCE--EEECC
Q ss_conf 48-876234555554179827--99615
Q gi|254780901|r 157 DC-GSTSYDALQYATNQGIDV--IVIDH 181 (600)
Q Consensus 157 D~-Gi~~~e~i~~a~~~Gidv--IVtDH 181 (600)
-+ +.....-++.+++.|++. |.+|=
T Consensus 88 ~~~~~~~~~~lkq~~~~G~~~~ii~~~~ 115 (182)
T 3h5l_A 88 HFYPQDQALFMNQFMTDPTNSLVYLQYG 115 (182)
T ss_dssp CCCHHHHHHHHHHHTTSCCSCEEEECSG
T ss_pred ECCCHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 2273245899999875146872999626