HHsearch results for GI: 254780901 and protein with PDBid: 2zvf_A

>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=94.00  E-value=0.38  Score=27.24  Aligned_cols=138  Identities=14%  Similarity=0.119  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCEEEEEEECCC
Q ss_conf             89999999999899999999999999999998752112434750262057858122222278998842010799886379
Q gi|254780901|r  327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED  406 (600)
Q Consensus       327 ~~a~~la~~L~~lN~~Rk~~e~~i~~~a~~~~~~~~~~~~~~~~ivv~~~~wh~GViGIVAsrL~e~y~kP~iv~s~~~d  406 (600)
                      +...++.+++.++.++.+.++.++...-.+.+..........+++ +...+...-.+--++.++.++. .-+++++..++
T Consensus        32 ~~i~~l~~e~k~l~k~~~~l~~~~~~~~~~~l~~~~~~i~~~~vv-~~~~~~d~~~lr~l~~~l~~~~-~~~vl~~~~~~  109 (171)
T 2zvf_A           32 KTVERFFEEWKDQRKEIERLKSVIADLWADILMERAEEFDSMKVV-AEVVDADMQALQKLAERLAEKG-AVGCLMAKGEG  109 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEESSSCEEE-EEECSCCHHHHHHHHHHHHHTT-EEEEEEEECSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCEEEE-EEECCCCHHHHHHHHHHHHCCC-CEEEEEECCCC
T ss_conf             999999999999999999999999999877776461677899888-6105899899999999984447-73897742688


Q ss_pred             CEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCC-CCCCEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             83799986489861888888530335301156532-223146422215889999999998622
Q gi|254780901|r  407 GKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHA-MAAGLTVERVNFGRLCDFFQKFAHNIV  468 (600)
Q Consensus       407 g~~kGS~RSi~g~~l~~~l~~~~~~~ll~~~GGH~-~AaG~ti~~~~l~~f~~~l~~~~~~~~  468 (600)
                      ....-++.| .++|..+++...+.. +-.++||-+ +|=|=.=..++++++.+.+.+++.++.
T Consensus       110 k~~v~~~~~-~~i~A~~ivk~~~~~-~~GkGGG~~~~AQggg~~~~~~~~~l~~~~~~l~~~~  170 (171)
T 2zvf_A          110 KVFVVTFSG-QKYDARELLREIGRV-AKGSGGGRKDVAQGAVQQLLDREEMLDVIFRFLSEHE  170 (171)
T ss_dssp             SEEEEEEES-SSSCHHHHHHHHHHH-HTEECCBCSSEEEEEESSCCCHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCC-CCCCHHHHHHHHHHH-CCCCCCCCHHHEEECCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             525775066-777899999999987-3998789668703479986789999999999998706