HHsearch results for GI: 254780901 and protein with PDBid: 2zxr_A
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=100.00 E-value=0 Score=1136.46 Aligned_cols=532 Identities=28% Similarity=0.421 Sum_probs=480.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHCCCCHHHCCCCHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 88734115788898899999988199999999999678897898866196677718995561487999999999997799
Q gi|254780901|r 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSE 93 (600)
Q Consensus 14 ~~~rW~~~~~~~~~~~~~~l~~~~~~~~~~a~iL~~Rgi~~~~~~~fL~p~l~~l~~dP~~l~dm~~A~~ri~~ai~~~e 93 (600)
+..||+..+. +..+.+..+++++|+|+++|++|++|||+.. ++|+|.+ +|+.|+||++||+||.+||+++|
T Consensus 3 ~~~rW~~~~~-~~~~~~~~l~~~~~i~~~~a~~L~~Rgi~~~---e~l~p~l-----~~~~l~dm~~Av~ri~~Ai~~~e 73 (666)
T 2zxr_A 3 DRVRWRVLSL-PPLAQWREVMAALEVGPEAALAYWHRGFRRK---EDLDPPL-----ALLPLKGLREAAALLEEALRQGK 73 (666)
T ss_dssp TTEEEEECCC-CCHHHHHHHHHHHTCCHHHHHHHHHTTCCSG---GGTSCCC-----CCCCCTTHHHHHHHHHHHHHTTC
T ss_pred CCCEEEECCC-CCHHHHHHHHHHCCCCHHHHHHHHHCCCCCH---HHHCCCC-----CCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 7863656699-9889999999981979999999996799997---8959554-----43774489999999999997699
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79999407886152899999999976994799807874336688978988742026868999648876234555554179
Q gi|254780901|r 94 KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQG 173 (600)
Q Consensus 94 kI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~G 173 (600)
||+|||||||||+||||||+++|+.+|++|.||||||++||||+|.+.++++++ |++|||||||||+++++|++|+++|
T Consensus 74 kI~I~GDYDvDGiTStaIL~~~L~~lg~~v~~yIP~R~~eGYGl~~~~i~~~~e-g~~LiITvDcGi~a~e~i~~a~~~G 152 (666)
T 2zxr_A 74 RIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHLE-ASDLFLTVDCGITNHAELRELLENG 152 (666)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHHTTCEEEECCC---------------------CCEEEESCCC--------------
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHH-CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 899997468416899999999999889965998889765688869999999860-8998999648823399999888679
Q ss_pred CCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 82799615447655567256523788886433443047889999999999970214887640779999999877542011
Q gi|254780901|r 174 IDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 (600)
Q Consensus 174 idvIVtDHH~~~~~~p~a~aivNP~~~~~~~p~~~l~gaGvaf~l~~al~~~l~~~~~~~~~~~l~~~ldlvaiGTvaD~ 253 (600)
|||||||||+| ++.|++.++|||++.++ ++++||||||||||++++.+.++.. ++.+|||||||||||||
T Consensus 153 idvIVtDHH~p-~~~p~~~~iinp~~~~~--~~~~L~GaGVafkl~~~l~~~~~~~-------~~~~~ldLvalgTIADv 222 (666)
T 2zxr_A 153 VEVIVTDHHTP-GKTPPPGLVVHPALTPD--LKEKPTGAGVAFLLLWALHERLGLP-------PPLEYADLAAVGTIADV 222 (666)
T ss_dssp CEEEEECCCC---------CEECGGGSTT--CCCCCCHHHHHHHHHHHHHHHTTCC-------CCGGGHHHHHHHHHHTT
T ss_pred CEEEEECCCCC-CCCCCCCEEECCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCC
T ss_conf 98999498999-87788757975676676--5333404589999999975511220-------18999889866651032
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCEEEECCCHHHHHHHH
Q ss_conf 11444118999987887751688743578987088864242345666774306233312122221002034258999999
Q gi|254780901|r 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333 (600)
Q Consensus 254 vpL~~eNR~lvk~GL~~l~~~~~~gl~~L~~~~~~~~~i~~~di~f~iaPrINAaGRl~~a~~av~lL~~~d~~~a~~la 333 (600)
|||.+|||+||++||+.+++++|+|+++|++.++.+ +++.||||.|||||||+|||++|+.+++||+++|+.+|..+|
T Consensus 223 vpL~~eNR~lVk~GL~~l~~~~~~gl~~L~~~~~~~--~~~~dIgF~IaPrINAaGRl~~a~~av~LLls~d~~~a~~la 300 (666)
T 2zxr_A 223 APLWGWNRALVKEGLARIPASSWVGLRLLAEAVGYT--GKAVEVAFRIAPRINAASRLGEAEKALRLLLTDDAAEAQALV 300 (666)
T ss_dssp CCCSHHHHHHHHHHHHHGGGCSSHHHHHHHHHTTCC--SCHHHHHHTHHHHHHHHHHTTCHHHHHHHHHCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHH
T ss_conf 364267899998746654224540478874322127--867786777765533545444244544555137889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCEEEEEEECCCCEEEEEE
Q ss_conf 99998999999999999999999987521124347502620578581222222789988420107998863798379998
Q gi|254780901|r 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSG 413 (600)
Q Consensus 334 ~~L~~lN~~Rk~~e~~i~~~a~~~~~~~~~~~~~~~~ivv~~~~wh~GViGIVAsrL~e~y~kP~iv~s~~~dg~~kGS~ 413 (600)
.+|+++|++||++|+++++++.++. .++.++||+++++||+||+|||||||+|+|+|||||++. .|||+
T Consensus 301 ~~L~~lN~~Rk~ie~~i~~ea~~~~------~~~~~~ivl~~~~wh~GViGIVAsRL~e~y~rP~iVls~-----~kGS~ 369 (666)
T 2zxr_A 301 GELHRLNARRQTLEEAMLRKLLPQA------DPEAKAIVLLDPEGHPGVMGIVASRILEATLRPVFLVAQ-----GKGTV 369 (666)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSS------CTTCSSEEEECTTCCHHHHHHHHHHHHHHHCSCEEEEET-----TEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEC-----CEEEE
T ss_conf 9998889999999999999987654------135637999878776116889999999863897899976-----63888
Q ss_pred ECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCHHHCCCCEEEEEEECHHHCCHHHH
Q ss_conf 64898618888885303353011565322231464222158899999999986226443377147604434689799999
Q gi|254780901|r 414 RSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 (600)
Q Consensus 414 RSi~g~~l~~~l~~~~~~~ll~~~GGH~~AaG~ti~~~~l~~f~~~l~~~~~~~~~~~~~~~~l~iD~el~~~~i~~~l~ 493 (600)
||++|||++++|..|++ +|.+||||+||||||++++++++|++++++++.+... ..+.+.+|.++++++++.+++
T Consensus 370 RSi~g~~l~~aL~~~~~--lL~~fGGH~~AAG~sl~~~~l~~F~~~l~~~~~~~~~---~~~~~~~dd~l~~~~i~~~l~ 444 (666)
T 2zxr_A 370 RSLAPISAVEALRSAED--LLLRYGGHKEAAGFAMDEALFPAFKARVEAYAARFPD---PVREVALLDLLPEPGLLPQVF 444 (666)
T ss_dssp ECCTTCCHHHHHHHTGG--GCSEEEECSSEEEEECCGGGHHHHHHHHHHHHHTSCC---CCEEEEECEECCCGGGHHHHH
T ss_pred ECCCCCCHHHHHHHHHH--HHHHCCCHHHCCCCEECHHHHHHHHHHHHHHHHHCCC---CCCCHHEEEECCCCCCHHHHH
T ss_conf 78887683889976655--6652796331672367652159999999999985430---012200110037030229999
Q ss_pred HHHHHCCCCCCCCCCCEEEECCEEEEEEEEECC-CEEEEEEECCCCCEEEEEEECCCCCCHHHHHHCCCCCEEEEEEEEE
Q ss_conf 999851846789998468427809988888479-6499999849987799999778787012355306998799999976
Q gi|254780901|r 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLC 572 (600)
Q Consensus 494 ~~L~~lePFG~gNpeP~F~~~~~~i~~~r~vGk-~Hlkl~l~~~~g~~i~aI~Fn~~~~~~~~~~~~~~g~~idii~~l~ 572 (600)
++|++|+|||+|||+|+|+++++.+ +.+.+|+ +|+||.++ .+++||||+.+. ..+..+|++|+|+
T Consensus 445 ~~L~~LePFG~gNp~P~F~~~~~~~-~~~~vg~gkHlkl~l~-----~~~aI~F~~~~~--------~~~~~vdi~~~l~ 510 (666)
T 2zxr_A 445 RELALLEPYGEGNPEPLFLLFGAPE-EARRLGEGRHLAFRLK-----GVRVLAWKQGDL--------ALPPEVEVAGLLS 510 (666)
T ss_dssp HHHGGGCSCSSSSCCCCEEEEECCE-EEEESSSSSEEEEEET-----TEEEEEECCSSC--------SCCSSEEEEEEEE
T ss_pred HHHHHCCCCCCCCCCCEEEECCCEE-EEEEECCCCEEEEEEE-----CCCEEEECCCCC--------CCCCEEEEEEEEE
T ss_conf 9999639888999986798338589-9878627847999995-----788899889765--------7798799999974
Q ss_pred EEEECCCCEEEEEEEEEEECCCCCC
Q ss_conf 6545781105899998011131126
Q gi|254780901|r 573 VNYWRGSKRCQLRVLDASPVEGHHF 597 (600)
Q Consensus 573 ~N~~~G~~s~QL~I~Di~p~e~~~~ 597 (600)
+|+|+|++++||+|+|||+.++...
T Consensus 511 ~N~w~G~~~~QL~I~Dir~~~~~~~ 535 (666)
T 2zxr_A 511 ENAWNGHLAYEVQAVDLRKPEALEG 535 (666)
T ss_dssp EEEETTEEEEEEEEEEEESCCCCBC
T ss_pred EEEECCEEEEEEEEEEECCCCCCCC
T ss_conf 7877997559999998067654002