HHsearch results for GI: 254780901 and protein with PDBid: 3dev_A
>3dev_A SH1221; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.10A {Staphylococcus haemolyticus JCSC1435}
Probab=99.89 E-value=2.5e-21 Score=185.05 Aligned_cols=301 Identities=15% Similarity=0.163 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECC--CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHH--HHHHHHHCCCCEE
Q ss_conf 799999999999779979999407--886152899999999976994799807874336688978--9887420268689
Q gi|254780901|r 78 CDKAARRIVQAIYNSEKIMIFGDY--DVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS--LMEKFINEGAQLI 153 (600)
Q Consensus 78 m~~A~~ri~~ai~~~ekI~I~gDy--D~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~--~i~~~~~~g~~Li 153 (600)
|.+..++|.+.|++.++|+|+|+. |.||+.|+..|..+|+.+|.++.+++|.++.++|+.-.. .+.+... ..+++
T Consensus 1 m~~~~~~i~~~i~~~~~i~I~~H~~pD~D~igSa~al~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~-~~~~v 79 (320)
T 3dev_A 1 MVEIFNEIMQRVKEAETIIIHRHVRPDPDAYGSQLGLKLYLERKFPEKNIYATGEAEPSLSFIGDLDEIDDSVY-SDALV 79 (320)
T ss_dssp CCCHHHHHHHHHHTCSEEEEECBSSCCHHHHHHHHHHHHHHHHHCTTSEEEECCCCCGGGTTTCCCCCCCSSTT-TTCEE
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHCCCHHHHCCCCC-CCCEE
T ss_conf 96899999999965995999968998578999999999999960998599988999757775478153020025-76469
Q ss_pred EEECCCCCCHHHHHH-HHHCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 996488762345555-5417982799615447655567256523788886433443047889999999999970214887
Q gi|254780901|r 154 ITVDCGSTSYDALQY-ATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV 232 (600)
Q Consensus 154 ItvD~Gi~~~e~i~~-a~~~GidvIVtDHH~~~~~~p~a~aivNP~~~~~~~p~~~l~gaGvaf~l~~al~~~l~~~~~~ 232 (600)
|+|||+..+ .+.. ....+..+||+|||..++. +....+|+|+. -|.+.+.|.++.. ++....+
T Consensus 80 IivD~~~~~--~i~~~~~~~~~~vivIDHH~s~~~-~~~~~~id~~~---------~st~~lv~~~~~~----~~~~~~i 143 (320)
T 3dev_A 80 IVCDTANAP--RIDDQRYLNGQSLIKIDHHPATDQ-YGDVNFVNTEA---------SSTSEIIFDFISH----FNDLSII 143 (320)
T ss_dssp EEESCSSGG--GBSSGGGGSSSCEEEEECSCSSCC-CSSEEEECTTS---------SCHHHHHHHHHHT----TTCTTTC
T ss_pred EEECCCCCC--CCCCHHHHCCCCEEEEEECCCCCC-CCCEEEEECCC---------CHHHHHHHHHHHH----HCCCCCC
T ss_conf 993589745--465244523784599985258776-76357872450---------0399999999997----4035799
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHC
Q ss_conf 64077999999987754201111444118999987887751688743578987088864242345666774306233312
Q gi|254780901|r 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 (600)
Q Consensus 233 ~~~~~l~~~ldlvaiGTvaD~vpL~~eNR~lvk~GL~~l~~~~~~gl~~L~~~~~~~~~i~~~di~f~iaPrINAaGRl~ 312 (600)
......+ ...|.+.|.--+.. ...++. .|.++..|.+.|-
T Consensus 144 --~~~~a~~---l~~gi~~Dt~~~~~-------------------------------~~~~~~--~~~~~~~L~~~g~-- 183 (320)
T 3dev_A 144 --DEHVARV---LYLGIVGDTGRFLF-------------------------------SNTSPH--TMEVASQLLAYPF-- 183 (320)
T ss_dssp --CHHHHHH---HHHHHHHHTTTTTS-------------------------------TTCCHH--HHHHHHHHHHSSS--
T ss_pred --CHHHHHH---HHHHHHHHHCCEEC-------------------------------CCCCHH--HHHHHHHHHHCCC--
T ss_conf --9999999---99999666163324-------------------------------899876--9999999987399--
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE--EE-----CCCCCHHHHHH
Q ss_conf 122221002034258999999999989999999999999999999875211243475026--20-----57858122222
Q gi|254780901|r 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV--VE-----GDRWHPGIVGL 385 (600)
Q Consensus 313 ~a~~av~lL~~~d~~~a~~la~~L~~lN~~Rk~~e~~i~~~a~~~~~~~~~~~~~~~~iv--v~-----~~~wh~GViGI 385 (600)
+.... ...+.+...++..+ ...+...+ .......+.. +. .-+..++-+.-
T Consensus 184 ~~~~~---------------~~~l~~~~~~~~~~----~~~~l~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 240 (320)
T 3dev_A 184 NHNAE---------------LNKMSEKDPKLMPF----QGYVLQNF----ELSDSHEYCQIKITNDVLKQFDIQPNEASQ 240 (320)
T ss_dssp CHHHH---------------HHHHHCBCGGGHHH----HHHHHHSC----CBCTTSSEEEEEECHHHHHHTTCCHHHHTT
T ss_pred CHHHH---------------HHHHHHHHHHHHHH----HHHHHHCC----CEECCCCEEEEECCHHHHHHCCCCCHHHHH
T ss_conf 55999---------------99998757899999----99996100----032588689996258889872897236789
Q ss_pred HHHHHHHHHHCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEC-CCCHHHHHHHHHHHH
Q ss_conf 2789988420107998863798379998648986188888853033530115653222314642-221588999999999
Q gi|254780901|r 386 LAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVE-RVNFGRLCDFFQKFA 464 (600)
Q Consensus 386 VAsrL~e~y~kP~iv~s~~~dg~~kGS~RSi~g~~l~~~l~~~~~~~ll~~~GGH~~AaG~ti~-~~~l~~f~~~l~~~~ 464 (600)
+++.+...-+.++.++-...++..++|+|| .|+|+.++... | .+|||++|||++|+ .+.++++.+.+.+..
T Consensus 241 iv~~l~~i~g~~v~~~~~~~~~~v~~S~RS-~~~dv~~ia~~------~-gGGGH~~AAG~~i~~~~~~~~~~~~l~~~l 312 (320)
T 3dev_A 241 FVNTVADISGLKIWMFGVDEGDQIRCRIRS-KGITINDVANQ------F-GGGGHPNASGVSVYSWDEFEELAQALRQKL 312 (320)
T ss_dssp CGGGSTTBTTCCEEEEEEECSSSEEEEEEE-SSSCCHHHHHH------T-TCEEETTEEEEEESSHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCEEEEEEEEEECCEEEEEEEC-CCCCHHHHHHH------H-CCCCCHHHCEEEECCCCHHHHHHHHHHHHH
T ss_conf 998855847659999999989999999978-99799999988------1-996556624888488433999999999998
Q ss_pred HH
Q ss_conf 86
Q gi|254780901|r 465 HN 466 (600)
Q Consensus 465 ~~ 466 (600)
.+
T Consensus 313 ~e 314 (320)
T 3dev_A 313 LE 314 (320)
T ss_dssp TS
T ss_pred HH
T ss_conf 76