HHSEARCH alignment of GI: 254780901 and SCOP domain: d1ir6a_

Alignment
>d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=0  Score=802.87  Aligned_cols=381  Identities=31%  Similarity=0.470  Sum_probs=346.7

Q ss_pred             HHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf             55614879999999999977997999940788615289999999997699479980787433668897898874202686
Q gi|254780901|r   72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ  151 (600)
Q Consensus        72 P~~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~  151 (600)
                      ++.|+||++|++||.+||+++|+|+|||||||||+||||||+++|+++|+++.||||+|++||||+|.+.++++.+ +++
T Consensus         4 ~~~l~~m~~A~~~i~~ai~~~e~I~I~gDyD~DGitS~aIl~~~L~~~g~~~~~~Ip~R~~eGyGl~~~~i~~~~~-~~~   82 (385)
T d1ir6a_           4 LLPLKGLREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHLE-ASD   82 (385)
T ss_dssp             CCCCTTHHHHHHHHHHHHHTTCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEECCCTTTSCSSCCGGGHHHHHT-TCS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHH-CCC
T ss_conf             7673589999999999997799799992778606799999999999889975998778665699868999999853-377


Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             89996488762345555541798279961544765556725652378888643344304788999999999997021488
Q gi|254780901|r  152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNK  231 (600)
Q Consensus       152 LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~~~~~~p~a~aivNP~~~~~~~p~~~l~gaGvaf~l~~al~~~l~~~~~  231 (600)
                      |||||||||++++++++++++|+||||||||+| .+.|++.+++||++.+  ++++++|||||||+|++++.+.+...  
T Consensus        83 LiItvD~G~~~~e~i~~~~~~gi~vIv~DHH~~-~~~~~~~~iv~~~~~~--~~~~~~~gaGva~~l~~~l~~~~~~~--  157 (385)
T d1ir6a_          83 LFLTVDCGITNHAELRELLENGVEVIVTDHHTP-GKTPPPGLVVHPALTP--DLKEKPTGAGVAFLLLWALHERLGLP--  157 (385)
T ss_dssp             EEEESSCCTTCGGGHHHHTTSCCEEEEECCSCC-CSSCCSSEEECGGGST--TCCCCCCHHHHHHHHHHHHHHTTTCC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCEECCCCCCC-CCCCCHHHHHCCCCCC--CCHHCCCHHHHHHHHHHHHHHHHHHH--
T ss_conf             699823652203667667632872321465465-6574012121576788--50101302578999999886432442--


Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHH
Q ss_conf             76407799999998775420111144411899998788775168874357898708886424234566677430623331
Q gi|254780901|r  232 VPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRI  311 (600)
Q Consensus       232 ~~~~~~l~~~ldlvaiGTvaD~vpL~~eNR~lvk~GL~~l~~~~~~gl~~L~~~~~~~~~i~~~di~f~iaPrINAaGRl  311 (600)
                           ++.+|++|||+|||||||||.++||++|+.||+.+++++++|+++|++..+.+  .+++||+|.|+|||||+|||
T Consensus       158 -----~~~~~l~L~aiGtiaD~~pL~~eNR~lv~~gl~~~~~~~~~g~~~L~~~~~~~--~~~~di~f~i~P~iNA~GRl  230 (385)
T d1ir6a_         158 -----PPLEYADLAAVGTIADVAPLWGWNRALVKEGLARIPASSWVGLRLLAEAVGYT--GKAVEVAFRIAPRINAASRL  230 (385)
T ss_dssp             -----CCGGGHHHHHHHHHHTTCCCSSHHHHHHHHHHHHCTTCSCHHHHHHHHHTTCC--SCSHHHHHTHHHHHHHHHHT
T ss_pred             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC--CCHHHHHHHHHHHHCCCCCC
T ss_conf             -----20244455456455455401367889987777785114558899997542213--20122111113111333444


Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             21222210020342589999999999899999999999999999998752112434750262057858122222278998
Q gi|254780901|r  312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK  391 (600)
Q Consensus       312 ~~a~~av~lL~~~d~~~a~~la~~L~~lN~~Rk~~e~~i~~~a~~~~~~~~~~~~~~~~ivv~~~~wh~GViGIVAsrL~  391 (600)
                      +++..+++||+++|.+++..++.+|+.+|++||+++++++++|.++..      +...++++++++||+||+|||||||+
T Consensus       231 ~~a~~a~~lL~~~~~~~a~~~a~~l~~~N~~Rk~~~~~i~~~a~~~~~------~~~~~i~~~~~~~~~GviGivAsrl~  304 (385)
T d1ir6a_         231 GEAEKALRLLLTDDAAEAQALVGELHRLNARRQTLEEAMLRKLLPQAD------PEAKAIVLLDPEGHPGVMGIVASRIL  304 (385)
T ss_dssp             TCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC------TTSSSEEEECTTCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf             431021244441236789999999887777899999999999875430------33515999537766202204589999


Q ss_pred             HHHHCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCHH
Q ss_conf             84201079988637983799986489861888888530335301156532223146422215889999999998622644
Q gi|254780901|r  392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL  471 (600)
Q Consensus       392 e~y~kP~iv~s~~~dg~~kGS~RSi~g~~l~~~l~~~~~~~ll~~~GGH~~AaG~ti~~~~l~~f~~~l~~~~~~~~~~~  471 (600)
                      ++|+||+++++.     .|||+||++|+|+.++|+.|++  +|.+||||++|||||++++++++|+++|++++++..  +
T Consensus       305 ~~~~kP~iv~~~-----~kGS~Rs~~g~~l~~~l~~~~~--~l~~~GGH~~AaG~~i~~~~~~~F~~~l~~~~~~~~--~  375 (385)
T d1ir6a_         305 EATLRPVFLVAQ-----GKGTVRSLAPISAVEALRSAED--LLLRYGGHKEAAGFAMDEALFPAFKARVEAYAARFP--D  375 (385)
T ss_dssp             HHHCSCEEEEET-----TEEEEECCSSCCHHHHHHTTGG--GCSEEEECSSEEEEECCGGGHHHHHHHHHHHHHSSC--C
T ss_pred             HHCCCCEEEEEC-----CEEEEECCCCCCHHHHHHHHHC--HHHCCCCHHHCCEEEECHHHHHHHHHHHHHHHHHCC--C
T ss_conf             972997899966-----7387768999789999998745--301379916704679749899999999999998563--5


Q ss_pred             HCCCCEEEE
Q ss_conf             337714760
Q gi|254780901|r  472 ITTPVFKID  480 (600)
Q Consensus       472 ~~~~~l~iD  480 (600)
                      ..++...+|
T Consensus       376 ~~~~~~~~d  384 (385)
T d1ir6a_         376 PVREVALLD  384 (385)
T ss_dssp             TTTTCCSTT
T ss_pred             CCCHHHHCC
T ss_conf             322044247


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: DHH phosphoesterases
superfamily: DHH phosphoesterases
family: Exonuclease RecJ
domain: Exonuclease RecJ
species: Thermus thermophilus [TaxId: 274]