HHSEARCH alignment of GI: 254780901 and SCOP domain: d2jfga1

Alignment
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}
Probab=90.68  E-value=0.23  Score=27.11  Aligned_cols=81  Identities=16%  Similarity=0.304  Sum_probs=47.7

Q ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-------CCCCCCCCHHHHHHHHHCCCCEEEEECCCCC-C
Q ss_conf             7997999940788615289999999997699479980787-------4336688978988742026868999648876-2
Q gi|254780901|r   91 NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR-------IVDGYGPNPSLMEKFINEGAQLIITVDCGST-S  162 (600)
Q Consensus        91 ~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R-------~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~-~  162 (600)
                      ++++|+|+|   . |.|+-++ .++|.+.|++|..+=.+.       +.++--+.........-.+.+++|. =-|+. +
T Consensus         4 ~~K~v~ViG---l-G~sG~s~-a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~-SPGi~~~   77 (93)
T d2jfga1           4 QGKNVVIIG---L-GLTGLSC-VDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVA-SPGIALA   77 (93)
T ss_dssp             TTCCEEEEC---C-SHHHHHH-HHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEE-CTTSCTT
T ss_pred             CCCEEEEEE---E-CHHHHHH-HHHHHHCCCEEEEEECCCCCHHHHHHHHCCCEEECCCCHHHHCCCCEEEE-CCCCCCC
T ss_conf             899999996---7-8999999-99999779989996087682557898406515525663432225878998-8987999


Q ss_pred             HHHHHHHHHCCCCEE
Q ss_conf             345555541798279
Q gi|254780901|r  163 YDALQYATNQGIDVI  177 (600)
Q Consensus       163 ~e~i~~a~~~GidvI  177 (600)
                      ++.+.+|+++|+.||
T Consensus        78 ~~~~~~a~~~gi~ii   92 (93)
T d2jfga1          78 HPSLSAAADAGIEIV   92 (93)
T ss_dssp             SHHHHHHHHTTCEEE
T ss_pred             CHHHHHHHHCCCCEE
T ss_conf             999999998699748


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]