RPSBLAST alignment for GI: 254780901 and conserved domain: COG0608
>gnl|CDD|30953 COG0608, RecJ, Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]. Length = 491
Score = 365 bits (939), Expect = e-101
Identities = 182/492 (36%), Positives = 262/492 (53%), Gaps = 23/492 (4%)
Query: 68 LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYI 127
L+ DP +L D +KAA RI +AI EKI+I+GDYD DG S A++ + L + + YI
Sbjct: 12 LLLDPFLLKDMEKAAARIAEAIEKGEKILIYGDYDADGITSAAILAKALRRLGADVDYYI 71
Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
P+R +GYG + K EGA LIITVD GS S + + A GIDVIV DHH E
Sbjct: 72 PNRFEEGYG----AIRKLKEEGADLIITVDNGSGSLEEIARAKELGIDVIVTDHHPPGEE 127
Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247
A A+VNPN L GV F + + LR+D LLDLVAL
Sbjct: 128 LPDAVAIVNPNLPGCDYPFKELAGVGVAFKLARALLEELRKD-----------LLDLVAL 176
Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSIN 306
TV DV PL G NR V +GL R+ G PG+KAL++ + TA ++G++IGP IN
Sbjct: 177 GTVADVQPLTGENRILVNQGLKRLRKSGRPGIKALLKLAGRDTRQPTASDIGFIIGPRIN 236
Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
A GR+G++ G LL+++D ++ E LA +L++LN+ R+ +E+ +L++A V +
Sbjct: 237 AAGRLGDAKAGVELLLTEDDEKAESLAEELELLNEERKKIENELLKEAIKIVEAL--EES 294
Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE-GFDIGKMV 425
VIVV + WHPG++G++A+RL FGRP ++ + +G GS RSI G D+ K++
Sbjct: 295 GEYVIVVSEEEWHPGVLGIVASRLLNAFGRPVIVLAGDAEGGAKGSARSIAKGIDLRKLL 354
Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
+ +L K GGHAMAAGL+++ N + A I+ +ID L
Sbjct: 355 RKGRSKLLLEKFGGHAMAAGLSLKEENLEEFRGILGEIASMILDKEELREKLEIDFALKD 414
Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
+ + L+ LE+ P+G GNP P+F ++ R HL+ + L AI
Sbjct: 415 EDITLELVSALETLEPFGQGNPLPLFLRKAAEVVGGRGG--GHLKAAGANIPK--LDAIE 470
Query: 546 FRVYGTPLGEFL 557
F L
Sbjct: 471 FLKDLDKLLGEQ 482