RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780901|ref|YP_003065314.1| single-stranded-DNA-specific
exonuclease protein [Candidatus Liberibacter asiaticus str. psy62]
(600 letters)
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair,
hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A
2zxp_A 1ir6_A (A:49-242)
Length = 194
Score = 158 bits (400), Expect = 2e-39
Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 11/198 (5%)
Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
L L +AA + +A+ ++I + GDYD DG A+++R L+ + + +IP R
Sbjct: 3 ALLPLKGLREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHR 62
Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
+ +GYG + + + E + L +TVDCG T++ L+ G++VIV DHH + P
Sbjct: 63 LEEGYGVLMERVPEHL-EASDLFLTVDCGITNHAELRELLENGVEVIVTDHHTP-GKTPP 120
Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
+V+P DL AGV FL+L ++ L L DL A+ T+
Sbjct: 121 PGLVVHPALTPDLK--EKPTGAGVAFLLLWALHERLGLP-------PPLEYADLAAVGTI 171
Query: 251 CDVVPLIGLNRAYVVKGL 268
DV PL G NRA V +GL
Sbjct: 172 ADVAPLWGWNRALVKEGL 189
>3dev_A SH1221; alpha-beta protein., structural genomics, PSI-2,
protein structure initiative; 3.10A {Staphylococcus
haemolyticus JCSC1435} (A:1-196)
Length = 196
Score = 127 bits (319), Expect = 5e-30
Identities = 29/185 (15%), Positives = 50/185 (27%), Gaps = 23/185 (12%)
Query: 80 KAARRIVQAIYNSEKIMIFGDYDVDGAA--SVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
+ I Q + +E I+I D A S + +L N+Y
Sbjct: 3 EIFNEIXQRVKEAETIIIHRHVRPDPDAYGSQLGLKLYLERKFPEKNIYATGEAEPSLSF 62
Query: 138 NPSLMEKFI-NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
L E L+I D + Q G +I IDHH + +
Sbjct: 63 IGDLDEIDDSVYSDALVIVCDTANAPRIDDQRY-LNGQSLIKIDHHPATDQYGDVNFVNT 121
Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
+ ++F + + D + ++ L V D
Sbjct: 122 E----------ASSTSEIIFDFISHFNDLSIIDEH---------VARVLYLGIVGDTGRF 162
Query: 257 IGLNR 261
+ N
Sbjct: 163 LFSNT 167
>3dma_A Exopolyphosphatase-related protein; structural genomics,
PSI-2, protein structure initiative, northeast
structural genomics consortium, NESG; 2.25A {Bacteroides
fragilis} (A:1-214)
Length = 214
Score = 112 bits (280), Expect = 1e-25
Identities = 26/208 (12%), Positives = 49/208 (23%), Gaps = 26/208 (12%)
Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDY--DVDGAASVALMMRFLSHCSVNANMYIPDR 130
L + ++KI+I D D S + FL N+ +P+
Sbjct: 2 LTKVIAQAHIDHFTKWFERADKIVIVSHVSPDGDAIGSSLGLYHFLDSQDKIVNVIVPNA 61
Query: 131 IVDGYGPNPSLME-----------KFINEGAQLIITVDCGSTS--YDALQYATNQGIDVI 177
D P + + A +I +D + + I
Sbjct: 62 FPDFLKWXPGSKDILLYDRYQEFADKLIXEADVICCLDFNALKRIDEXSDIVAASPGRKI 121
Query: 178 VIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNF 236
IDHH + +C G + + F
Sbjct: 122 XIDHHLYPEDFCRITISHPEISSTSELVFRLICRXGYFSDISKEGAECIYTGXXTDTGGF 181
Query: 237 --------DLLSLLDLVALATVCDVVPL 256
+ +L++ D +
Sbjct: 182 TYNSNNREIYFIISELLSKG--IDKDDI 207
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair,
hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A
2zxp_A 1ir6_A (A:327-422)
Length = 96
Score = 102 bits (256), Expect = 1e-22
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
+A IV+ HPG++G++A+R+ E RP F ++ +G G+ RS+ + +
Sbjct: 2 EAKAIVLLDPEGHPGVMGIVASRILEATLRPVFLVA-----QGKGTVRSLAPISAVEALR 56
Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI 467
A + +L++ GGH AAG ++ F + +A
Sbjct: 57 SAED--LLLRYGGHKEAAGFAMDEALFPAFKARVEAYAARF 95
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair,
hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A
2zxp_A 1ir6_A (A:1-48,A:423-534)
Length = 160
Score = 101 bits (252), Expect = 3e-22
Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 13/122 (10%)
Query: 474 TPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF 533
+ +L + + L PYG GNP P+F ++ R+ HL
Sbjct: 51 VREVALLDLLPEPGLLPQVFRELALLEPYGEGNPEPLFLLFGAPEEARRLGEGRHLAFRL 110
Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
+ +A++ L + V G L N W G +++ +D E
Sbjct: 111 KGVR-----VLAWKQGDLALPP--------EVEVAGLLSENAWNGHLAYEVQAVDLRKPE 157
Query: 594 GH 595
Sbjct: 158 AL 159
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair,
hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A
2zxp_A 1ir6_A (A:243-326)
Length = 84
Score = 94.0 bits (234), Expect = 5e-20
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 276 NPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
GL+ L E V A + + I P INA R+GE+ RLL++DD+ E + L +
Sbjct: 3 WVGLRLLAEAVGY--TGKAVEVAFRIAPRINAASRLGEAEKALRLLLTDDAAEAQALVGE 60
Query: 336 LDVLNQNRRLMESAMLEQAEAKV 358
L LN R+ +E AML + +
Sbjct: 61 LHRLNARRQTLEEAMLRKLLPQA 83
>2eb0_A Manganese-dependent inorganic pyrophosphatase; DHH domain,
DHHA2 domain, structural genomics, NPPSFA; 2.20A
{Methanocaldococcus jannaschii DSM2661} (A:1-191)
Length = 191
Score = 91.0 bits (225), Expect = 4e-19
Identities = 26/183 (14%), Positives = 49/183 (26%), Gaps = 24/183 (13%)
Query: 95 IMIFG--DYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQL 152
+ G + D D AS ++ FL P+ E + +
Sbjct: 2 RYVVGHKNPDTDSIASAIVLAYFLDCYPARLGDINPETEFVLRKFGVMEPELIESAKGKE 61
Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLS-GQGHLCA 211
II VD S +G + +IDHH+V +
Sbjct: 62 IILVDHSEKSQ--SFDDLEEGKLIAIIDHHKVGLTTTEPILYYAKPVGSTATVIAELYFK 119
Query: 212 AGVVF--------------LVLVLIYR---ILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
+ L+L I + + L+ ++ L +A + ++
Sbjct: 120 DAIDLIGGKKKELKPDLAGLLLSAIISDTVLFKSPTTTDLDKEMAK--KLAEIAGISNIE 177
Query: 255 PLI 257
Sbjct: 178 EFG 180
>2haw_A Manganese-dependent inorganic pyrophosphatase; substrate
complex, hydrolase; HET: 1PE PG4; 1.75A {Bacillus
subtilis} (A:1-192)
Length = 192
Score = 42.8 bits (100), Expect = 1e-04
Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 11/108 (10%)
Query: 93 EKIMIFGDY--DVDGAASVALMMRFLSHCSVNANMYIPDRI-------VDGYGPNPSLME 143
EKI+IFG D D S + NA ++ +D + +
Sbjct: 2 EKILIFGHQNPDTDTICSAIAYADLKNKLGFNAEPVRLGQVNGETQYALDYFKQESPRLV 61
Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
+ +I VD + + VIDHH++ + E
Sbjct: 62 ETAANEVNGVILVDHNERQQ--SIKDIEEVQVLEVIDHHRIANFETAE 107
>1wpn_A Manganese-dependent inorganic pyrophosphatase; metal
binding, hydrolase; 1.30A {Bacillus subtilis} (A:)
Length = 188
Score = 42.8 bits (100), Expect = 1e-04
Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 11/108 (10%)
Query: 93 EKIMIFG--DYDVDGAASVALMMRFLSHCSVNANMYIPDRI-------VDGYGPNPSLME 143
EKI+IFG + D D S + NA ++ +D + +
Sbjct: 2 EKILIFGHQNPDTDTICSAIAYADLKNKLGFNAEPVRLGQVNGETQYALDYFKQESPRLV 61
Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
+ +I VD + + VIDHH++ + E
Sbjct: 62 ETAANEVNGVILVDHN--ERQQSIKDIEEVQVLEVIDHHRIANFETAE 107
>3dma_A Exopolyphosphatase-related protein; structural genomics,
PSI-2, protein structure initiative, northeast
structural genomics consortium, NESG; 2.25A {Bacteroides
fragilis} (A:215-343)
Length = 129
Score = 35.5 bits (82), Expect = 0.017
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
Query: 398 SFAISFEEDGKGI-GSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVE 449
S + + + K I S RS+ F + A E GGGH A+G
Sbjct: 60 SCFLREDTEKKXIKISLRSVGKFPCNR---LAAE---FFNGGGHLNASGGEFY 106
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2
function project, S2F, structural genomics, unknown
functio; 2.20A {Escherichia coli} (A:103-217)
Length = 115
Score = 32.8 bits (75), Expect = 0.13
Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
G G S ++ G IT G S + A QG+ HH
Sbjct: 68 WCTGGGQ--SFIDSAARFGVDAFIT---GEVSEQTIHSAREQGLHFYAAGHH 114
>2gx8_A NIF3-related protein; structural genomics, unknown function,
PSI, protein structure initiative; HET: EPE; 2.20A
{Bacillus cereus atcc 14579} (A:133-154,A:269-359)
Length = 113
Score = 32.9 bits (75), Expect = 0.13
Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
++ G G + + +GA + +T G Y A G++++ H+
Sbjct: 66 VLGGDGN--KYINQAKFKGADVYVT---GDMYYHVAHDAMMLGLNIVDPGHN 112
>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388,
selenomethionine SAD, unknown function; 2.00A
{Staphylococcus aureus subsp} (A:108-131,A:239-332)
Length = 118
Score = 32.5 bits (74), Expect = 0.14
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
I+ G G + + +GA + +T G + A G+++I I+H+
Sbjct: 71 IIGGSGI--GYEYQAVQQGADVFVT---GDIKHHDALDAKIHGVNLIDINHY 117
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase
[isomerizing]; amidotransferase, ammonia channeling,
glucosamine 6- phosphate synthase; HET: F6R; 2.05A
{Escherichia coli} (A:450-608)
Length = 159
Score = 32.1 bits (72), Expect = 0.21
Identities = 12/155 (7%), Positives = 39/155 (25%), Gaps = 11/155 (7%)
Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
DK + + + + G ++ ++ ++A Y + G
Sbjct: 2 DKRIEALAEDFSDKHHALFLG-RGDQYPIALEGALKLKEISYIHAEAYAAGELKHGPLAL 60
Query: 139 PSLMEKFINEGAQLIITVDCGSTS---YDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
I+ +I+ ++ +G + V ++
Sbjct: 61 -------IDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVSSDNMHII 113
Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDN 230
++++ + V + + D
Sbjct: 114 EMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQ 148
>3dev_A SH1221; alpha-beta protein., structural genomics, PSI-2,
protein structure initiative; 3.10A {Staphylococcus
haemolyticus JCSC1435} (A:197-320)
Length = 124
Score = 30.6 bits (69), Expect = 0.55
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGG 438
P + + G + +E + RS G I + A + G GG
Sbjct: 38 QPNEASQFVNTVADISGLKIWXFGVDEGDQIRCRIRSK-GITINDV---ANQFG----GG 89
Query: 439 GHAMAAGLTVE 449
GH A+G++V
Sbjct: 90 GHPNASGVSVY 100
>2fyw_A Conserved hypothetical protein; structural genomics, PSI,
midwest center for structural genomics, MCSG; 2.40A
{Streptococcus pneumoniae TIGR4} (A:107-229)
Length = 123
Score = 30.6 bits (69), Expect = 0.61
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
I G G S + + +GA + IT G Y Q + G+ + H+
Sbjct: 76 ICGGSGQ--SFYKDALAKGADVYIT---GDIYYHTAQDXLSDGLLALDPGHY 122
>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase
[isomerizing] 1; glucosamine-6-phosphate synthase,
aldose/ketose isomerase, rossmann-like fold; HET: G6P;
1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A* (A:217-375)
Length = 159
Score = 30.5 bits (68), Expect = 0.62
Identities = 15/107 (14%), Positives = 37/107 (34%), Gaps = 13/107 (12%)
Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRF-LSHCSVNANMYIPDRIVDGYGP 137
D +++ +Y+ + ++I G + L + + + I +GP
Sbjct: 2 DDEIQKLATELYHQKSVLIMG---RGYHYATCLEGALKIKEITYMHSEGILA-GELKHGP 57
Query: 138 NPSLMEKFINEGAQLIITVDCGSTS---YDALQYATNQGIDVIVIDH 181
+++ +I+ + T +ALQ + +VI
Sbjct: 58 LA-----LVDKLMPVIMIIMRDHTYAKCQNALQQVVARQGRPVVICD 99
>2vh3_A Ranasmurfin, RSF-1; LTQ, bisltq, unknown function; HET: TY3
TY2; 1.16A {Polypedates leucomystax} PDB: 2vh3_B* (A:)
Length = 113
Score = 30.5 bits (68), Expect = 0.67
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 18/99 (18%)
Query: 380 PGIVGLLAARLK--EKFGRPSFAI-----SFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
PG LA L+ + F + S+A+ +++ED + R+ E FD + +EG
Sbjct: 12 PGSKECLAEALQKHQGFKKKSYALICAYLNYKEDAENYE--RAAEDFDSAVKCT-GCKEG 68
Query: 433 I--------LVKGGGHAMAAGLTVERVNFGRLCDFFQKF 463
+ L++ G A L ++R G LC FQK
Sbjct: 69 VDLHEGNPELIEEGFEKFLASLKIDRKALGSLCTLFQKL 107
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A
{Escherichia coli} (A:1-104,A:237-271)
Length = 139
Score = 29.5 bits (66), Expect = 1.2
Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 140 SLMEKFINEGAQLIITVDCGSTSYD-ALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
+ ++ G ++++ S + A++ A I VI +D E+ ++ +P
Sbjct: 48 ANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ-ATKGEVVSHIASDP 105
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
translation termination, ATP-binding, cytoplasm,
hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
(A:1-326)
Length = 326
Score = 29.4 bits (65), Expect = 1.4
Identities = 24/173 (13%), Positives = 50/173 (28%), Gaps = 37/173 (21%)
Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
PL+L++ + I Q+ + K F + LS + +
Sbjct: 151 PLLLSNPPRNM--IGQSQSGTGKTAAF-------------ALTMLSRVDASVPKPQAICL 195
Query: 132 VDGYGPNPSLMEKFINEGAQLI--ITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
P+ L + ++ ++ V D++ +++
Sbjct: 196 A----PSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIG---------- 241
Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLL 242
P + DL + L A + VL +L Q + + LL
Sbjct: 242 ------TPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLL 288
Score = 27.1 bits (59), Expect = 7.5
Identities = 13/132 (9%), Positives = 37/132 (28%), Gaps = 32/132 (24%)
Query: 35 QKHAIPDIVARVLVNRNVSIDYAKD-------FLNPSIRLLMPDP-----LILTDCDKAA 82
Q+ A+P +++ RN+ I ++ F + + + L + A
Sbjct: 146 QEKALPLLLSN--PPRNM-IGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELA 202
Query: 83 RRI---VQAIYNSEKIMIFGDYDVDGAAS--------VALMMRFLSHC------SVNANM 125
R+I V + ++ + + + + +
Sbjct: 203 RQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKV 262
Query: 126 YIPDRIVDGYGP 137
++ D +
Sbjct: 263 FVLDEADNMLDQ 274
>3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F,
transport protein, structural genomics, PSI-2; 2.02A
{Bacillus halodurans c-125} (A:1-108,A:243-305)
Length = 171
Score = 28.8 bits (64), Expect = 2.0
Identities = 8/59 (13%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 140 SLMEKFINEGAQLIITVDCGSTSYD-ALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
+++E+ I + I + A + GI +++ D ++ N
Sbjct: 52 TVLEQAIAKNPAGIAISAIDPVELTDTINKAVDAGIPIVLFDSG-APDSHAHSFLGTNT 109
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown
function, NPPSFA; 2.60A {Thermus thermophilus HB8}
(A:103-213)
Length = 111
Score = 28.6 bits (64), Expect = 2.3
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
A L +T G + +G++VI H+
Sbjct: 79 DADLFVT---GEPKHSVFHETFERGLNVIYAGHY 109
>3ksm_A ABC-type sugar transport system, periplasmic component; PSI-
II, structural genomics, protein structure initiative;
HET: BDR; 1.90A {Hahella chejuensis kctc 2396}
(A:1-106,A:243-276)
Length = 140
Score = 28.4 bits (63), Expect = 2.8
Identities = 8/69 (11%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 140 SLMEKFINEG-AQLIITVDCGST-SYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
++ +++ +I + ++ + I V+V+D + + +P
Sbjct: 49 QILSYHLSQAPPDALILAPNSAEDLTPSVAQYRARNIPVLVVDSD-LAGDAHQGLVATDP 107
Query: 198 NRLDDLSGQ 206
L+ Q
Sbjct: 108 EYXGYLAVQ 116
>1k20_A Manganese-dependent inorganic pyrophosphatase; family II
ppase, binuclear metal centre, hydrolase; 1.50A
{Streptococcus gordonii} (A:1-192)
Length = 192
Score = 28.2 bits (62), Expect = 3.1
Identities = 15/107 (14%), Positives = 26/107 (24%), Gaps = 9/107 (8%)
Query: 94 KIMIFGDY--DVDGAASVALMMRFLSHCSVNANMYIPD-------RIVDGYGPNPSLMEK 144
KI++FG D D S + V Y +
Sbjct: 2 KILVFGHQNPDSDAIGSSYAFAYLAREAYGLDTEAVALGEPNEETAFVLDYFGVAAPRVI 61
Query: 145 FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
+ + + + V+DHH+V + E
Sbjct: 62 TSAKAEGAEQVILTDHNEFQQSVADIAEVEVYGVVDHHRVANFETAN 108
>3brs_A Periplasmic binding protein/LACI transcriptional regulator;
structural genomics, protein structure initiative; 2.00A
{Clostridium phytofermentans isdg} (A:1-112,A:246-289)
Length = 156
Score = 27.7 bits (61), Expect = 4.9
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 140 SLMEKFINEGAQLIITVDCGSTSYD-ALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
L+E+ I +I+ A + + GI +IVID + + +P
Sbjct: 56 ELIEEAIKRKPDVILLAAADYEKTYDAAKEIKDAGIKLIVIDSGMKQ-DIADITVATDP 113
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase;
methionine, cobalamin, vitamin B12; 1.70A {Thermotoga
maritima} (A:1-294)
Length = 294
Score = 27.3 bits (60), Expect = 5.5
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 12/64 (18%)
Query: 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151
SE++++ DGA M N+ PD ++ + +I G+
Sbjct: 12 SERVLLL-----DGAYGTEFMKYGYDDLPEELNIKAPDVVLKVH-------RSYIESGSD 59
Query: 152 LIIT 155
+I+T
Sbjct: 60 VILT 63
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D
structure, asparaginase 1 family, GATD subfamily, lyase;
3.00A {Pyrococcus abyssi} (A:304-438)
Length = 135
Score = 27.4 bits (61), Expect = 5.8
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 11/100 (11%)
Query: 131 IVDGY-GPNPSLMEKFINEGAQLII--TVDCGSTS---YDALQYATNQGIDVIVIDHHQV 184
+V Y G + +++ +++G + I+ G T +++ A +G+ V Q
Sbjct: 6 LVKVYPGISSEIIDFLVDKGYKGIVIEGTGLGHTPNDIIPSIERAVEEGVAVCXT--SQC 63
Query: 185 KSEEIPAYALVNPNRLDD---LSGQGHLCAAGVVFLVLVL 221
+ +L + + L V L VL
Sbjct: 64 IYGRVNLNVYSTGRKLLKAGVIPCEDXLPETAYVKLXWVL 103
>1wsa_A Asparaginase, asparagine amidohydrolase; signal,
periplasmic; 2.20A {Wolinella succinogenes} (A:206-330)
Length = 125
Score = 27.1 bits (60), Expect = 6.1
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 8/97 (8%)
Query: 131 IVDGY-GPNPSLMEKFINEGAQLIITVDCGSTS-----YDALQYATNQGIDVIVIDHHQV 184
I+ + L+ + GA+ II G+ + +AL+ A G+ V +V
Sbjct: 15 ILYAHPDDTDVLVNAALQAGAKGIIHAGMGNGNPFPLTQNALEKAAKSGVVVARS--SRV 72
Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVL 221
S A V+ +L ++ + V L+L L
Sbjct: 73 GSGSTTQEAEVDDKKLGFVATESLNPQKARVLLMLAL 109
>3l6u_A ABC-type sugar transport system periplasmic component;
structural genomics, nysgrc, target 11006S, PSI-2,
protein structure initiative; 1.90A {Exiguobacterium
sibiricum} (A:1-111,A:250-293)
Length = 155
Score = 27.0 bits (59), Expect = 6.1
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 140 SLMEKFINEGAQLIITVDCGSTSYD-ALQYATNQGIDVIVIDH 181
+ +F++ I A++ A GI V ID
Sbjct: 55 EQILEFVHLKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDR 97
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein,
thermophilic proteins; HET: RIP; 1.90A
{Thermoanaerobacter tengcongensis} (A:1-104,A:238-283)
Length = 150
Score = 27.3 bits (60), Expect = 6.4
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 140 SLMEKFINEGAQLIITVDCGSTSYD-ALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
S +E I + +++ S + A++ A ++ I VI ID ++ + +P
Sbjct: 48 SNVEDLIQQKVDVLLINPVDSDAVVTAIKEANSKNIPVITIDRS-ANGGDVVCHIASDP 105
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic
comparison,; 1.95A {Escherichia coli} (A:202-326)
Length = 125
Score = 27.1 bits (60), Expect = 6.8
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 8/97 (8%)
Query: 131 IVDGY-GPNPSLMEKFINEGAQLIITVDCGSTS-----YDALQYATNQGIDVIVIDHHQV 184
IV Y + + ++ G I++ G+ + +D L A G V+ +V
Sbjct: 15 IVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRS--SRV 72
Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVL 221
+ A V+ + ++ V L L L
Sbjct: 73 PTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLAL 109
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase,
ligase/RNA complex; 3.15A
{Methanothermobacterthermautotrophicus} (A:301-435)
Length = 135
Score = 27.1 bits (60), Expect = 7.3
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 11/100 (11%)
Query: 131 IVDGY-GPNPSLMEKFINEGAQLII--TVDCGSTS---YDALQYATNQGIDVIVIDHHQV 184
+ Y G +P +++ ++EG + I+ G + A + G+ V + Q
Sbjct: 6 FIKSYPGISPDIIKWHLDEGYRGIVIEGTGLGHCPDTLIPVIGEAHDMGVPVAMT--SQC 63
Query: 185 KSEEIPAYALVNPNRLDD---LSGQGHLCAAGVVFLVLVL 221
+ + RL + L V + VL
Sbjct: 64 LNGRVNMNVYSTGRRLLQAGVIPCDDMLPEVAYVKMCWVL 103
>2fn9_A Ribose ABC transporter, periplasmic ribose- binding protein;
RBP, periplasmic binding protein, thermophilic proteins;
1.40A {Thermotoga maritima MSB8} PDB: 2fn8_A*
(A:1-106,A:247-290)
Length = 150
Score = 26.9 bits (59), Expect = 8.2
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 140 SLMEKFINEGAQLIITVDCGSTS-YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
+ + I G II + ++ A GI V +D A +P
Sbjct: 49 AHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGINARGLAVAQIYSDP 107
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase,
protein-DNA cleavage complex; HET: DNA LFX; 2.90A
{Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C*
(C:1-161,C:205-230)
Length = 187
Score = 26.8 bits (59), Expect = 8.3
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 7/42 (16%)
Query: 94 KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
KI+I D D DGA L++ F Y+ + G+
Sbjct: 121 KIIIMTDADTDGAHIQTLLLTFFYR-------YMRPLVEAGH 155
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein;
glucose binding protein, periplasmic binding protein,
GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A*
3c6q_B* (A:1-104,A:238-280)
Length = 147
Score = 26.6 bits (58), Expect = 9.1
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 140 SLMEKFINEGAQLIITVDCGSTSYD-ALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198
++E FI EG I T+ ++ A GI V+ +D S Y +P
Sbjct: 48 QMLESFIAEGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTDSPDSGRYV-YIGTDPY 106
Query: 199 RLDDLS 204
+ LS
Sbjct: 107 MMGYLS 112
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.322 0.139 0.406
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 4,616,101
Number of extensions: 214429
Number of successful extensions: 664
Number of sequences better than 10.0: 1
Number of HSP's gapped: 647
Number of HSP's successfully gapped: 52
Length of query: 600
Length of database: 4,956,049
Length adjustment: 93
Effective length of query: 507
Effective length of database: 1,812,184
Effective search space: 918777288
Effective search space used: 918777288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.2 bits)