HHsearch alignment for GI: 254780902 and conserved domain: TIGR02088

>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases; InterPro: IPR011828 This entry represents a group of archaeal decarboxylating dehydrogenases which include the leucine biosynthesis enzyme 3-isopropylmalate dehydrogenase (LeuB, LEU3) and the methanogenic cofactor CoB biosynthesis enzyme isohomocitrate dehydrogenase (AksF). Both of these have been characterised in Methanococcus janaschii . Sequences from the non-methanogenic archaea are also represented in this entry, presumably LeuB, although phylogenetic trees cannot establish which gene is which in the methanogens.; GO: 0003862 3-isopropylmalate dehydrogenase activity, 0051287 NAD binding, 0009098 leucine biosynthetic process.
Probab=100.00  E-value=0  Score=800.30  Aligned_cols=329  Identities=21%  Similarity=0.210  Sum_probs=294.1

Q ss_pred             EEEECCCCCCHHHHHHHHHHHH----CCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCC
Q ss_conf             7997598630899999999984----179984489982748998652862778999999865938872644898544321
Q gi|254780902|r   10 VVSLDGDEMTRIIWQLIQENLI----HPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKE   85 (412)
Q Consensus        10 Iv~l~GDgiG~Ei~~~~l~vl~----~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~~~   85 (412)
T Consensus         1 vaVI~GDGIG~EV~~~A~~il~kli~~~~l~~e~~~~EaG~e~l~k~G~Alpe~tl~~i~k~DaiLFGA~t~~~~~ev--   78 (350)
T TIGR02088         1 VAVIEGDGIGKEVIEAAIRILNKLIDKLGLEIELIELEAGDEALEKYGSALPEDTLEEIKKADAILFGAVTETAAVEV--   78 (350)
T ss_pred             CEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHCCCCCCHHHHHHHHHCCEEEECCCCCCCCCCC--
T ss_conf             967378888823147899999999987399437876120167775318998976899996279475378788887547--


Q ss_pred             CCCCCCCCCHHHHHHHHCCCEEEEEEE-EEC------CCCCCCC--CCCCCEEEEECCCCCCCCCCEEE-ECCCCEEEEE
Q ss_conf             124422110458989732966883058-804------8787788--87786799850566630010147-7788459999
Q gi|254780902|r   86 FNLKKMWKSPNGTIRNILGGIIFREPI-ICS------NVPRLIP--GWKKPIIIGRHAFGDQYRATDFQ-FPSKGKLILK  155 (412)
Q Consensus        86 ~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~------~~p~~~~--~~~~divivREnteg~Y~gie~~-~~~~~~~~i~  155 (412)
T Consensus        79 ----p~YksvivtLRkeldlYANvRP~k~l~iGqliG~I~~~~~~na~~~DiVIVRENTE~LY~G~e~~e~~d~~~ia~-  153 (350)
T TIGR02088        79 ----PSYKSVIVTLRKELDLYANVRPAKALPIGQLIGGIEDLYNLNAKNLDIVIVRENTEGLYAGFEIGEFSDDLAIAI-  153 (350)
T ss_pred             ----CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEE-
T ss_conf             ----875304203214626433547666556420010224556667888217998625654324775200488515764-


Q ss_pred             EECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCC-EEEEECHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9548886102554124665301011105146889999999999865998-999974267775108999999999863100
Q gi|254780902|r  156 FVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLP-LYLSTKDTILKSYDGRFKNIFNEIFEAEFK  234 (412)
Q Consensus       156 ~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~k-vt~v~KaNVlk~tdglf~~~~~eva~~~~~  234 (412)
T Consensus       154 ------------------------RViTr~gSeRIa~~A~~lAk~r~rKKvT~vHKANVlk~tdgLF~~V~rEi~~~---  206 (350)
T TIGR02088       154 ------------------------RVITRKGSERIARFAFELAKKRNRKKVTCVHKANVLKVTDGLFLEVCREIAKS---  206 (350)
T ss_pred             ------------------------EEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHCC---
T ss_conf             ------------------------51024643999999999998607940789972334233563159999998517---


Q ss_pred             CCCCCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHH
Q ss_conf             24542320002436999999985496651-88632102326788887750753231243127987514421222203455
Q gi|254780902|r  235 NQFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRH  313 (412)
Q Consensus       235 ~~~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~  313 (412)
T Consensus       207 ----~g~ve~~d~~vDs~a~~Lv~~P~~fDVIVTtNmFGDIlSD~A~~l~GsLGLaPSANiGd~--~AlFEPVHGsApD-  279 (350)
T TIGR02088       207 ----YGEVEYEDYLVDSAAMNLVKDPEKFDVIVTTNMFGDILSDLAAALVGSLGLAPSANIGDR--KALFEPVHGSAPD-  279 (350)
T ss_pred             ----CCCEEHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCCCCC-
T ss_conf             ----996413228899999985238630676786234524188999998502213676521045--2335776777656-


Q ss_pred             HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC-----CHHHHHCCCCCCCCEEHH
Q ss_conf             655424877554727999999999998630257303899999999999999987981-----632300157888713099
Q gi|254780902|r  314 YRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFM-----TKDLALLIGPEQDWLSTT  388 (412)
Q Consensus       314 ~g~~iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~-----T~DLg~~~~~~~~~~~T~  388 (412)
T Consensus       280 ----IAGKGIA-NP~A~ILs~~MmL~~~G~~sk----e~~~~l~~eA~~~~~~~~~~sGnklTPDlG-------G~~kT~  343 (350)
T TIGR02088       280 ----IAGKGIA-NPTAAILSVAMMLDYLGELSK----EEEAKLVEEAVEYIIIEKKKSGNKLTPDLG-------GSAKTK  343 (350)
T ss_pred             ----CCCCCCH-HHHHHHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-------CCCCHH
T ss_conf             ----3664102-378999999999986111001----145789999999998731545663377788-------840144


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254780902|r  389 DFIEKIS  395 (412)
Q Consensus       389 ef~daI~  395 (412)
T Consensus       344 ev~~ei~  350 (350)
T TIGR02088       344 EVGDEIA  350 (350)
T ss_pred             HHHCCCC
T ss_conf             3312269