HHsearch alignment for GI: 254780902 and conserved domain: TIGR02088
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases; InterPro: IPR011828 This entry represents a group of archaeal decarboxylating dehydrogenases which include the leucine biosynthesis enzyme 3-isopropylmalate dehydrogenase (LeuB, LEU3) and the methanogenic cofactor CoB biosynthesis enzyme isohomocitrate dehydrogenase (AksF). Both of these have been characterised in Methanococcus janaschii . Sequences from the non-methanogenic archaea are also represented in this entry, presumably LeuB, although phylogenetic trees cannot establish which gene is which in the methanogens.; GO: 0003862 3-isopropylmalate dehydrogenase activity, 0051287 NAD binding, 0009098 leucine biosynthetic process.
Probab=100.00 E-value=0 Score=800.30 Aligned_cols=329 Identities=21% Similarity=0.210 Sum_probs=294.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHH----CCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCC
Q ss_conf 7997598630899999999984----179984489982748998652862778999999865938872644898544321
Q gi|254780902|r 10 VVSLDGDEMTRIIWQLIQENLI----HPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKE 85 (412)
Q Consensus 10 Iv~l~GDgiG~Ei~~~~l~vl~----~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~~~ 85 (412)
T Consensus 1 vaVI~GDGIG~EV~~~A~~il~kli~~~~l~~e~~~~EaG~e~l~k~G~Alpe~tl~~i~k~DaiLFGA~t~~~~~ev-- 78 (350)
T TIGR02088 1 VAVIEGDGIGKEVIEAAIRILNKLIDKLGLEIELIELEAGDEALEKYGSALPEDTLEEIKKADAILFGAVTETAAVEV-- 78 (350)
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHCCCCCCHHHHHHHHHCCEEEECCCCCCCCCCC--
T ss_conf 967378888823147899999999987399437876120167775318998976899996279475378788887547--
Q ss_pred CCCCCCCCCHHHHHHHHCCCEEEEEEE-EEC------CCCCCCC--CCCCCEEEEECCCCCCCCCCEEE-ECCCCEEEEE
Q ss_conf 124422110458989732966883058-804------8787788--87786799850566630010147-7788459999
Q gi|254780902|r 86 FNLKKMWKSPNGTIRNILGGIIFREPI-ICS------NVPRLIP--GWKKPIIIGRHAFGDQYRATDFQ-FPSKGKLILK 155 (412)
Q Consensus 86 ~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~------~~p~~~~--~~~~divivREnteg~Y~gie~~-~~~~~~~~i~ 155 (412)
T Consensus 79 ----p~YksvivtLRkeldlYANvRP~k~l~iGqliG~I~~~~~~na~~~DiVIVRENTE~LY~G~e~~e~~d~~~ia~- 153 (350)
T TIGR02088 79 ----PSYKSVIVTLRKELDLYANVRPAKALPIGQLIGGIEDLYNLNAKNLDIVIVRENTEGLYAGFEIGEFSDDLAIAI- 153 (350)
T ss_pred ----CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEE-
T ss_conf ----875304203214626433547666556420010224556667888217998625654324775200488515764-
Q ss_pred EECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCC-EEEEECHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9548886102554124665301011105146889999999999865998-999974267775108999999999863100
Q gi|254780902|r 156 FVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLP-LYLSTKDTILKSYDGRFKNIFNEIFEAEFK 234 (412)
Q Consensus 156 ~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~k-vt~v~KaNVlk~tdglf~~~~~eva~~~~~ 234 (412)
T Consensus 154 ------------------------RViTr~gSeRIa~~A~~lAk~r~rKKvT~vHKANVlk~tdgLF~~V~rEi~~~--- 206 (350)
T TIGR02088 154 ------------------------RVITRKGSERIARFAFELAKKRNRKKVTCVHKANVLKVTDGLFLEVCREIAKS--- 206 (350)
T ss_pred ------------------------EEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHCC---
T ss_conf ------------------------51024643999999999998607940789972334233563159999998517---
Q ss_pred CCCCCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHH
Q ss_conf 24542320002436999999985496651-88632102326788887750753231243127987514421222203455
Q gi|254780902|r 235 NQFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRH 313 (412)
Q Consensus 235 ~~~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~ 313 (412)
T Consensus 207 ----~g~ve~~d~~vDs~a~~Lv~~P~~fDVIVTtNmFGDIlSD~A~~l~GsLGLaPSANiGd~--~AlFEPVHGsApD- 279 (350)
T TIGR02088 207 ----YGEVEYEDYLVDSAAMNLVKDPEKFDVIVTTNMFGDILSDLAAALVGSLGLAPSANIGDR--KALFEPVHGSAPD- 279 (350)
T ss_pred ----CCCEEHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCCCCC-
T ss_conf ----996413228899999985238630676786234524188999998502213676521045--2335776777656-
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC-----CHHHHHCCCCCCCCEEHH
Q ss_conf 655424877554727999999999998630257303899999999999999987981-----632300157888713099
Q gi|254780902|r 314 YRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFM-----TKDLALLIGPEQDWLSTT 388 (412)
Q Consensus 314 ~g~~iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~-----T~DLg~~~~~~~~~~~T~ 388 (412)
T Consensus 280 ----IAGKGIA-NP~A~ILs~~MmL~~~G~~sk----e~~~~l~~eA~~~~~~~~~~sGnklTPDlG-------G~~kT~ 343 (350)
T TIGR02088 280 ----IAGKGIA-NPTAAILSVAMMLDYLGELSK----EEEAKLVEEAVEYIIIEKKKSGNKLTPDLG-------GSAKTK 343 (350)
T ss_pred ----CCCCCCH-HHHHHHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-------CCCCHH
T ss_conf ----3664102-378999999999986111001----145789999999998731545663377788-------840144
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780902|r 389 DFIEKIS 395 (412)
Q Consensus 389 ef~daI~ 395 (412)
T Consensus 344 ev~~ei~ 350 (350)
T TIGR02088 344 EVGDEIA 350 (350)
T ss_pred HHHCCCC
T ss_conf 3312269