HHsearch alignment for GI: 254780902 and conserved domain: TIGR02924
>TIGR02924 ICDH_alpha isocitrate dehydrogenase; InterPro: IPR014273 This entry represents a group of isocitrate dehydrogenases found mainly in the alphaproteobacteria. Many of the species containing these proteins appear to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 from EC vs. NADPH -- 1.1.1.42 from EC) is unclear..
Probab=100.00 E-value=0 Score=776.20 Aligned_cols=337 Identities=24% Similarity=0.257 Sum_probs=308.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCC-CCCHHHHHHHHHCCEEEECCCCCCCCCCCCCC
Q ss_conf 86799759863089999999998417998448998274899865286-27789999998659388726448985443211
Q gi|254780902|r 8 KPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDD-QVTIDAAHAIKNCGVGIKCATITADQARVKEF 86 (412)
Q Consensus 8 ~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~-~l~~da~eaik~~~v~lkg~~~tP~~~~~~~~ 86 (412)
T Consensus 1 ~PITVAYGDGIGPEIMeAVL~IL~eA~A~i~ietiEiG~~~Y~k~w~~GI~~SsWesI~RtKvLLKaPitTPQ------- 73 (481)
T TIGR02924 1 IPITVAYGDGIGPEIMEAVLLILKEAEAEIQIETIEIGEKVYKKEWSSGISPSSWESIRRTKVLLKAPITTPQ------- 73 (481)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCCCCCCCHHHHHHCCCEECCCCCCCC-------
T ss_conf 9706872799895278999999997179625678871310114788547875607889757704417877886-------
Q ss_pred CCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCCCCE
Q ss_conf 24422110458989732966883058804878778--8877867998505666300101477788459999954888610
Q gi|254780902|r 87 NLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLI--PGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTI 164 (412)
Q Consensus 87 ~l~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~~~--~~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~g~~~ 164 (412)
T Consensus 74 --GgG~KSLNVtlRK~LGLyANiRP--CvsyhP~i~t~~p~ldiVivRENEEDlYtGiEYR~T~d~Y~c~K~I------- 142 (481)
T TIGR02924 74 --GGGHKSLNVTLRKTLGLYANIRP--CVSYHPVIETKYPNLDIVIVRENEEDLYTGIEYRQTQDTYECTKVI------- 142 (481)
T ss_pred --CCCEEEHHHHHHHHCCCEEECCC--CCCCCCEECCCCCCCCEEEEEECCCCCCCCEEEEECCCCEEEEEEE-------
T ss_conf --58534124464322475041266--5300352416779834699983564232551143057810255534-------
Q ss_pred EEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 255412466530101110514688999999999986599-8999974267775108999999999863100245423200
Q gi|254780902|r 165 EKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQL-PLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGIT 243 (412)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~-kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i~ 243 (412)
T Consensus 143 ------------------TrsgsEkIcrYAF~YA~~~nRKkVTCl~KDNIMK~TDGiFHk~F~~IA~e-------YPdI~ 197 (481)
T TIGR02924 143 ------------------TRSGSEKICRYAFEYARKHNRKKVTCLIKDNIMKLTDGIFHKIFDKIAKE-------YPDIE 197 (481)
T ss_pred ------------------ECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHC-------CCCCC
T ss_conf ------------------06862578999989877649868999620371301223678778997431-------78854
Q ss_pred HHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 02436999999985496651-88632102326788887750753231243127987514421222203455655424877
Q gi|254780902|r 244 YTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKE 322 (412)
Q Consensus 244 ~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~ 322 (412)
T Consensus 198 ~EhyIvDIG~Ar~A~~PE~FDVIVT~NLYGDIlSDvaA~~SGSvGLaGSaNIG~~--YAMFEAVHGSAPd-----IAGkn 270 (481)
T TIGR02924 198 SEHYIVDIGMARIATNPENFDVIVTPNLYGDILSDVAAEISGSVGLAGSANIGEE--YAMFEAVHGSAPD-----IAGKN 270 (481)
T ss_pred CCCEEEECCHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHCCHHHHHHHHHCCC--CCEEEEECCCCCC-----CCCCC
T ss_conf 1640681033411367986545874776765477788876142222234412468--8604543277854-----15667
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHH
Q ss_conf 55472799999999999863025730389999999999999998798163230015788871309999999999999999
Q gi|254780902|r 323 TSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKISDNLRDAL 402 (412)
Q Consensus 323 iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~T~ef~daI~~~l~~~l 402 (412)
T Consensus 271 IA-NPSGLLNAAi~MLvyigQ~-------d~A~liynAwLKTLEdGvHTADIy~-~k~Sk~KVgTkeFA~aV~~nlG~~P 341 (481)
T TIGR02924 271 IA-NPSGLLNAAIQMLVYIGQK-------DIAQLIYNAWLKTLEDGVHTADIYN-EKTSKKKVGTKEFAEAVVKNLGKKP 341 (481)
T ss_pred CC-CHHHHHHHHHHHHHHHCHH-------HHHHHHHHHHHHHHHCCCCHHHHCC-CCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 66-7005799999986400454-------6899998776444213743133212-3366666652579999998616781
Q ss_pred H
Q ss_conf 8
Q gi|254780902|r 403 Q 403 (412)
Q Consensus 403 ~ 403 (412)
T Consensus 342 ~ 342 (481)
T TIGR02924 342 E 342 (481)
T ss_pred C
T ss_conf 0