RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780902|ref|YP_003065315.1| isocitrate dehydrogenase
[Candidatus Liberibacter asiaticus str. psy62]
(412 letters)
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase,
NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB:
1t0l_A* 1t09_A* 3inm_A* 2cmj_A* 2cmv_A*
Length = 413
Score = 435 bits (1120), Expect = e-123
Identities = 257/411 (62%), Positives = 318/411 (77%), Gaps = 7/411 (1%)
Query: 1 MKKIKVTKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDA 60
++IKV KPVV +DGDEMTRIIWQ I+E LI P++D++++YFDL + NRD T+DQVTID+
Sbjct: 2 DQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDS 61
Query: 61 AHAIKNCGVGIKCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRL 120
A A + V +KCATIT D+ARV+EF LKKMWKSPNGTIRNILGG +FREPIIC N+PRL
Sbjct: 62 ALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRL 121
Query: 121 IPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEK-EVFDSPGSGIAMA 179
+PGW KPI IGRHA GDQY+ATDF G + F DG + ++ EV++ P G+ M
Sbjct: 122 VPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMG 181
Query: 180 MYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDE 239
MYN D+SI FA + QYA+ ++ PLY+STK+TILK+YDGRFK+IF EIFE +K FD+
Sbjct: 182 MYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDK 241
Query: 240 LGITYTHRLIDDMVASSIKWSGGYIWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGK 299
I Y HRLIDDMVA +K SGG++WACKNYDGDVQSDI+AQGFGSLGLMTSVL+ DGK
Sbjct: 242 YKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGK 301
Query: 300 TMETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLER 359
T+E EAAHGTVTRHYR+HQ+G+ TSTN IASIFAWTRGL HR KLD N +L +FA+ LE+
Sbjct: 302 TIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEK 361
Query: 360 VCIKTVEDGFMTKDLALLIG------PEQDWLSTTDFIEKISDNLRDALQK 404
VC++TVE G MTKDLA I + +L+T+DF++ I NL AL +
Sbjct: 362 VCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNLDRALGR 412
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase;
HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A*
2qfx_A* 2qfv_A*
Length = 427
Score = 418 bits (1076), Expect = e-118
Identities = 252/410 (61%), Positives = 317/410 (77%), Gaps = 6/410 (1%)
Query: 1 MKKIKVTKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDA 60
KIKV +PVV LDGDEMTRIIW I++ LI PYLD+ ++Y+DLS+++RD T D++T DA
Sbjct: 16 FSKIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDA 75
Query: 61 AHAIKNCGVGIKCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRL 120
A AIK GVGIKCATIT D+ARVKEFNL KMWKSPNGTIRNILGG +FREPI+ +PRL
Sbjct: 76 AEAIKKYGVGIKCATITPDEARVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRL 135
Query: 121 IPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKE---VFDSPGSGIA 177
+P W+KPIIIGRHA GDQY+ATD P G L L + D T + + V+D GSG+A
Sbjct: 136 VPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSDPTTAQPQTLKVYDYKGSGVA 195
Query: 178 MAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQF 237
MAMYN D+SI FA ++ + A+ ++L L+LSTK+TILK YDGRFK+IF E++EA++K++F
Sbjct: 196 MAMYNTDESIEGFAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSKF 255
Query: 238 DELGITYTHRLIDDMVASSIKWSGGYIWACKNYDGDVQSDIVAQGFGSLGLMTSVLITAD 297
++LGI Y HRLIDDMVA IK GG+I A KNYDGDVQSDIVAQGFGSLGLMTS+L+T D
Sbjct: 256 EQLGIHYEHRLIDDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPD 315
Query: 298 GKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENL 357
GKT E+EAAHGTVTRHYR++Q+G+ETSTNSIASIFAW+RGLL R +LD L KFA L
Sbjct: 316 GKTFESEAAHGTVTRHYRKYQKGEETSTNSIASIFAWSRGLLKRGELDNTPALCKFANIL 375
Query: 358 ERVCIKTV-EDGFMTKDLALLIGPEQD--WLSTTDFIEKISDNLRDALQK 404
E + TV +DG MTKDLAL G + +++T +F++ + L+ ++
Sbjct: 376 ESATLNTVQQDGIMTKDLALACGNNERSAYVTTEEFLDAVEKRLQKEIKS 425
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation,
thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A
{Desulfotalea psychrophila} PDB: 2uxr_A*
Length = 402
Score = 368 bits (945), Expect = e-102
Identities = 186/402 (46%), Positives = 268/402 (66%), Gaps = 2/402 (0%)
Query: 3 KIKVTKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAH 62
KI++ P+V LDGDEMTR++W LI++ L+ P++D++ EY+DL I+ RD T+DQ+TIDAA
Sbjct: 2 KIQMKTPLVELDGDEMTRVLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAE 61
Query: 63 AIKNCGVGIKCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIP 122
AIK GVG+K ATIT +Q RV+E+ LK+ WKSPN T+R +L G +FR+PI+ N+ +
Sbjct: 62 AIKKYGVGVKNATITPNQDRVEEYGLKEQWKSPNATVRAMLDGTVFRKPIMVKNIKPSVR 121
Query: 123 GWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKEVFDSPGSGIAMAMYN 182
W+KPI++GRHA+GD Y+ + + GKL + +G+ + + + I ++N
Sbjct: 122 SWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVVTDKNGKETRQTIMEVDEPAIVQGIHN 181
Query: 183 LDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGI 242
SI +FARA +Y+L +++ + +TKDTI K YD RFK IF EIF E+K +F GI
Sbjct: 182 TVASIGHFARACFEYSLDQKIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAAGI 241
Query: 243 TYTHRLIDDMVASSIKWSGGYIWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTME 302
Y + LIDD+VA +K GG +WACKNYDGDV SD+VA FGSL +M+SVL++ G
Sbjct: 242 EYFYTLIDDVVARMMKTEGGMLWACKNYDGDVMSDMVASAFGSLAMMSSVLVSPYGYFEY 301
Query: 303 TEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCI 362
EAAHGTV RHY QH +G+ TSTN +A I+AWT L R +LD +L F ++LE + I
Sbjct: 302 -EAAHGTVQRHYYQHLKGERTSTNPVALIYAWTGALRKRGELDGTPDLCAFCDSLEAITI 360
Query: 363 KTVEDGFMTKDLALLIGPEQD-WLSTTDFIEKISDNLRDALQ 403
+ +E G+MT DLA + P L + +FI+++ L+ +
Sbjct: 361 ECIESGYMTGDLARICEPAAIKVLDSIEFIDELGKRLQQLNK 402
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline,
thermostable, oxidoreductase; 2.24A {Thermotoga maritima
MSB8}
Length = 399
Score = 337 bits (864), Expect = 3e-93
Identities = 199/403 (49%), Positives = 278/403 (68%), Gaps = 5/403 (1%)
Query: 1 MKKIKVTKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDA 60
M+K+KV P+V LDGDEM R++W++I+E LI PYLDI++ YFDL I+ RD TDDQ+TI+A
Sbjct: 1 MEKVKVKNPIVELDGDEMARVMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDDQITIEA 60
Query: 61 AHAIKNCGVGIKCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRL 120
A AIK GVG+KCATIT D RVKE+NLKK WKSPN TIR L G +FR+PI+ NVP L
Sbjct: 61 AKAIKKYGVGVKCATITPDAERVKEYNLKKAWKSPNATIRAYLDGTVFRKPIMVKNVPPL 120
Query: 121 IPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKEVFDSPGSGIAMAM 180
+ WKKPIIIGRHA+GD Y A + + ++ L + +T+ F G+G+ MAM
Sbjct: 121 VKRWKKPIIIGRHAYGDIYNAVEAKVEGPAEVELVVRNKENKTLLVHKF--EGNGVVMAM 178
Query: 181 YNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDEL 240
+NL+ SIR+FA++ + YA++ ++ ++ +TKDTI K Y FK+IF E + + K + ++
Sbjct: 179 HNLEKSIRSFAQSCINYAISEKVDIWFATKDTISKVYHAYFKDIFQEEVD-KRKEELEKA 237
Query: 241 GITYTHRLIDDMVASSIKWSGGYIWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKT 300
G+ Y + LIDD A ++ GG +WAC NY+GD+ SD++A GFGSLGLMTSVL++ DG
Sbjct: 238 GVNYRYMLIDDAAAQILRSEGGMLWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDGVY 297
Query: 301 METEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERV 360
EAAHGTV RHY ++ +G++TSTN ASIFAWT + R +LD E+ +FA+ LE+
Sbjct: 298 EF-EAAHGTVRRHYYRYLKGEKTSTNPTASIFAWTGAIRKRGELDGTPEVCEFADKLEKA 356
Query: 361 CIKTVEDGFMTKDLALLIGPE-QDWLSTTDFIEKISDNLRDAL 402
I T+E G +TKDL P +++ +FI+++ NL L
Sbjct: 357 VINTIESGVITKDLQPFTEPPIDKYVTLEEFIDEVKKNLEKLL 399
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic
acid cycle, oxidoreductase, protein phosphorylation,
NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP:
c.77.1.1
Length = 423
Score = 182 bits (462), Expect = 2e-46
Identities = 55/402 (13%), Positives = 120/402 (29%), Gaps = 34/402 (8%)
Query: 16 DEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCAT 75
+ ++++ + E I + + + T + + + I+ + IK
Sbjct: 36 NAASKVL-EAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLDVIREYFIAIKGPL 94
Query: 76 ITADQARVKEFNLKKMWKSPNGTIRNI----------------LGGIIFREPIICSNVPR 119
T ++ N+ + +IFRE
Sbjct: 95 TTPVGGGIRSLNVALRQELDLFVCLRPVRYFTGVPSPVKRPEDTDMVIFRENTEDIYAGI 154
Query: 120 LIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQT-IEKEVFDSPGSGIAM 178
+ + ++ +FP + +K V ++G + + + D
Sbjct: 155 EYAKGSEEVQKLISFLQNELNVNKIRFPETSGIGIKPVSEEGTSRLVRAAIDYAIEHGRK 214
Query: 179 AMYNLDDS-IRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQF 237
++ + I F A + K YD + +
Sbjct: 215 SVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDRIAEEQGKDAANKAQSEAE 274
Query: 238 DELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITA 296
I + D + + + + A N +GD SD +A G +G+ I
Sbjct: 275 AAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQVGGIGIAPGANINY 334
Query: 297 DGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAEN 356
+ EA HGT ++ + N + I + L H + A+
Sbjct: 335 ETGHAIFEATHGTAPKYAGLDK------VNPSSVILSGVLLLEHLG-------WNEAADL 381
Query: 357 LERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKISDNL 398
+ + KT+ +T D A L+ + ++F E++ N+
Sbjct: 382 VIKSMEKTIASKVVTYDFARLMDGAT-EVKCSEFGEELIKNM 422
>3dms_A Isocitrate dehydrogenase [NADP]; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A*
1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A
4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A*
1hj6_A* 7icd_A 8icd_A* 6icd_A 1cw1_A* ...
Length = 427
Score = 177 bits (451), Expect = 3e-45
Identities = 80/436 (18%), Positives = 147/436 (33%), Gaps = 67/436 (15%)
Query: 1 MKKIKVTK---------PVVSL---DG------DEMTRIIWQLIQENLIHPYLDIKIEYF 42
KI V K P++ DG M +++ E I
Sbjct: 20 GDKITVNKDFSLNVSDQPIIPYIEGDGTGFDITPVMIKVV-DAAVEKAYGGKKKIHWMEI 78
Query: 43 DLSIQNRDLTDDQVTI--DAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKSPNGTIR 100
+ + V + + +K V IK T +S N +R
Sbjct: 79 YAGEKATKVYGPDVWLPEETLQVLKEYVVSIKGPLTTPV---------GGGIRSLNVALR 129
Query: 101 NILGGIIFREPIIC-SNVPR-LIPGWKKPIIIGRHAFGDQYRATDFQFPS-KGKLILKFV 157
L + PI VP + K ++I R D Y ++ S + K ++KF+
Sbjct: 130 QELDLYVCLRPIQYFKGVPSPVREPEKTNMVIFRENSEDIYAGIEWAAESEQAKKVIKFL 189
Query: 158 GDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLP-LYLSTKDTILKS 216
++ + + G GI + R A+QYA+ + L K I+K
Sbjct: 190 QEEMGVKKIRFPQTSGIGI---KPVSKEGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKF 246
Query: 217 YDGRFKNIFNEIFEAEFKNQFDELG-------------ITYTHRLIDDMVASSIKWSGGY 263
+G F++ + + EF + + G I + D + + Y
Sbjct: 247 TEGAFRDAGYALAQKEFGAELIDGGPWMKFKNPKTGNEIVVKDSIADAFLQQILLRPAEY 306
Query: 264 -IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKE 322
+ A N +GD SD +A G +G+ ++ EA HGT ++ +
Sbjct: 307 DVIATLNLNGDYISDALAAQVGGIGIAPGANLSDSV--AMFEATHGTAPKYAGKD----- 359
Query: 323 TSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQ 382
N + I + L H + A+ + K+++ +T D A L+
Sbjct: 360 -YVNPGSEILSAEMMLRHLG-------WTEAADVIISAMEKSIKQKRVTYDFARLMEGAT 411
Query: 383 DWLSTTDFIEKISDNL 398
+S + F + + +N+
Sbjct: 412 Q-VSCSGFGQVLIENM 426
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex,
oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB:
1v94_A 1xgv_A 1xkd_A*
Length = 435
Score = 141 bits (357), Expect = 2e-34
Identities = 73/426 (17%), Positives = 135/426 (31%), Gaps = 57/426 (13%)
Query: 3 KIKVT-KPVVSL---DG------DEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLT 52
++V PVV+ DG + +++ + + I R+
Sbjct: 29 SLRVPDNPVVAFIRGDGVGPEVVESALKVV-DAAVKKVYGGSRRIVWWELLAGHLAREKC 87
Query: 53 DDQVTIDAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPI 112
+ + I+ V +K T ++S N IR L P+
Sbjct: 88 GELLPKATLEGIRLARVALKGPLETPVGTG---------YRSLNVAIRQALDLYANIRPV 138
Query: 113 ICSNVP--RLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKEVFD 170
P +I + + I +F+ + E +
Sbjct: 139 RYYGQPAPHKYADRVDMVIFRENTEDVYAGIEWPHDSPEAARIRRFLAE-----EFGISI 193
Query: 171 SPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFE 230
+GI + + + R RA + + K I+K +G F E+
Sbjct: 194 REDAGIGVKPISRFATRRLMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVAL 253
Query: 231 AEFK--------------NQFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQ 275
+F+ E I R+ D+M+ I Y + N +GD
Sbjct: 254 EKFREHVVTEQEVQEKYGGVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYI 313
Query: 276 SDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWT 335
SD + G +G+ + DG + E HGT ++ GK+ N A I + +
Sbjct: 314 SDAASALVGGIGMAAGM-NMGDGIAV-AEPVHGTAPKY-----AGKDLI-NPSAEILSAS 365
Query: 336 RGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKIS 395
+ E +E K V+ +T+DLA + P L T+++ E +
Sbjct: 366 LLIGEFMGWRE------VKSIVEYAIRKAVQSKKVTQDLARHM-PGVQPLRTSEYTETLI 418
Query: 396 DNLRDA 401
+ +A
Sbjct: 419 AYIDEA 424
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
domain swapping, phosphorylation, aromatic cluster,
NADP; 2.5A {Archaeoglobus fulgidus}
Length = 412
Score = 132 bits (334), Expect = 1e-31
Identities = 72/383 (18%), Positives = 132/383 (34%), Gaps = 49/383 (12%)
Query: 35 LDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKS 94
++ L + + D +AIK V +K T ++S
Sbjct: 59 KEVVWFQVYAGEDAYKLYGNYLPDDTLNAIKEFRVALKGPLTTPVGGG---------YRS 109
Query: 95 PNGTIRNILGGIIFREPIIC---SNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGK 151
N TIR +L P+ P P +I + + +
Sbjct: 110 LNVTIRQVLDLYANVRPVYYLKGVPSPIKHPEKVNFVIFRENTEDVYAGIEWPRGSEEAL 169
Query: 152 LILKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKD 211
+++F+ ++ V SGI + + + R A + + L K
Sbjct: 170 KLIRFLKNE-----FGVTIREDSGIGIKPISEFATKRLVRMAIRYAIENNRKSVTLVHKG 224
Query: 212 TILKSYDGRFKNIFNEIFEAEFK--------------NQFDELGITYTHRLIDDMVASSI 257
I+K +G F++ E+ + EF + E I R+ D+M +
Sbjct: 225 NIMKYTEGAFRDWGYEVAKQEFGEYCITEDELWDKYGGKQPEGKIVVKDRIADNMFQQIL 284
Query: 258 KWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQ 316
+ Y + A N +GD SD A G LG+ I DG + E HG+ ++ Q
Sbjct: 285 TRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGSNIG-DGIGVF-EPVHGSAPKYAGQ 342
Query: 317 HQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLAL 376
++ N A I + K +E +++ T+ G +T D+
Sbjct: 343 NK------VNPTAEILTGALMFEYIG-------WKDASEMIKKAVEMTISSGIVTYDIHR 389
Query: 377 LIGPEQDWLSTTDFIEKISDNLR 399
+G + + T +F E + +NL+
Sbjct: 390 HMGGTK--VGTREFAEAVVENLQ 410
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase);
oxidoreductase, leucine biosynthetic pathway,
NAD-dependant enzyme; 1.76A {Salmonella typhimurium}
SCOP: c.77.1.1 PDB: 1cm7_A
Length = 363
Score = 128 bits (323), Expect = 2e-30
Identities = 60/374 (16%), Positives = 116/374 (31%), Gaps = 52/374 (13%)
Query: 35 LDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVK-----EFNLK 89
+ I ++D+ D + + + + + E
Sbjct: 36 MRITTSHYDVGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPKWENLPPESQPERGAL 95
Query: 90 KMWKSPNGTIRNILGGIIFREPIICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSK 149
+ N+ +++ + I I+ R G Y
Sbjct: 96 LPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYF--------- 146
Query: 150 GKLILKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLST 209
GQ +E +Y+ I AR A + A R+ +
Sbjct: 147 -----------GQPKGREGSGQYEKAFDTEVYH-RFEIERIARIAFESARKRRRKVTSID 194
Query: 210 KDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITYTHRLIDDMVASSIKWSGGY-IWACK 268
K +L+S + I N++ + H ID+ IK + + C
Sbjct: 195 KANVLQSSILWRE-IVNDVA-------KTYPDVELAHMYIDNATMQLIKDPSQFDVLLCS 246
Query: 269 NYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSI 328
N GD+ SD A GS+G++ S + G + E A G+ ++ N I
Sbjct: 247 NLFGDILSDECAMITGSMGMLPSASLNEQGFGLY-EPAGGSAPDIAGKNI------ANPI 299
Query: 329 ASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTT 388
A I + L + ++ A +E+ + +E+G T DL +ST
Sbjct: 300 AQILSLALLLRYSLDAND------AATAIEQAINRALEEGVRTGDL----ARGAAAVSTD 349
Query: 389 DFIEKISDNLRDAL 402
+ + I+ + + +
Sbjct: 350 EMGDIIARYVAEGV 363
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase;
homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii
str} PDB: 2dht_A 2e5m_A*
Length = 409
Score = 125 bits (314), Expect = 2e-29
Identities = 86/422 (20%), Positives = 153/422 (36%), Gaps = 56/422 (13%)
Query: 2 KKIKVTKPVVSL---DG------DEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLT 52
K I KPV+ DG + ++I + ++ +IK + L
Sbjct: 18 KWIVPNKPVILYIEGDGIGPEITNAAIKVINKAVERAYGSS-REIKWLEVYAGEKAEKLV 76
Query: 53 DDQVTIDAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPI 112
+D+ + + V +K T WKS N IR +L P+
Sbjct: 77 NDRFPKETQEMLLKYRVVLKGPLETPIGKG---------WKSVNVAIRLMLDLYANIRPV 127
Query: 113 ICSN--VPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKEVFD 170
L K +II R D YR ++ F S+ K + ++ E+ D
Sbjct: 128 KYIEGLESPLKHPEKVDMIIFRENTDDLYRGIEYPFNSEEAK--KIRDFLRKELKVEIED 185
Query: 171 SPGSGIAMAMYNLDDSIRNFARAAMQYALARQLP-LYLSTKDTILKSYDGRFKNIFNEIF 229
G GI + I R A+QYA+ + + + K ++K +G F+ E+
Sbjct: 186 DTGIGIKVMSKYKTQRIT---RLAIQYAIEHKRKKVTIMHKGNVMKYTEGAFREWAYEVA 242
Query: 230 EAEFK-----------NQFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSD 277
E++ + D+ I R+ D+M I Y I N +GD SD
Sbjct: 243 LKEYRDFIVTEEEINQGKPDQGKIILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISD 302
Query: 278 IVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRG 337
G++G++ I +G E A HGT ++ ++ N I A
Sbjct: 303 AAGALIGNIGMLGGANIGDEGGMFE--AIHGTAPKYAGKNV------ANPTGIIKAGELM 354
Query: 338 LLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKISDN 397
L + A+ +E+ + D +T+D+A +G + L T ++ +++
Sbjct: 355 LRWMG-------WNEAADLIEKAINMAIRDKKVTQDIARFMGVKA--LGTKEYADELIKI 405
Query: 398 LR 399
+
Sbjct: 406 MD 407
>1v53_A 3-isopropylmalate dehydrogenase; IPMDH, HOMO dimer, X-RAY analysis,
oxidoreductase; 2.85A {Bacillus coagulans} SCOP:
c.77.1.1 PDB: 2ayq_A 1v5b_A
Length = 366
Score = 119 bits (298), Expect = 1e-27
Identities = 68/413 (16%), Positives = 136/413 (32%), Gaps = 62/413 (15%)
Query: 3 KIKVTKPVVSLDGD----EMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTI 58
K+K+ L GD E+ ++++ L + + E + D +
Sbjct: 2 KMKLA----VLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPE 57
Query: 59 DAAHAIKNCGVGIKCATITADQARVK-----EFNLKKMWKSPNGTIRNILGGIIFREPII 113
+ + + A E L + K G N+ + +
Sbjct: 58 ETLDICRRSDAILLGAVGGPKWDHNPASLRPEKGLLGLRK-EMGLFANLRPVKAYATLLN 116
Query: 114 CSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKEVFDSPG 173
S + R ++I R G Y E
Sbjct: 117 ASPLKRERVE-NVDLVIVRELTGGLY----------------------FGRPSERRGPGE 153
Query: 174 SGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEF 233
+ + + + I A Q A R+ L K +L+S ++ I E ++
Sbjct: 154 NEVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANVLES-SRMWREIAEET-AKKY 211
Query: 234 KNQFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSV 292
+ + +H L+D I G + + +N GD+ SD + GSLG++ S
Sbjct: 212 PD------VELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGSLGMLPSA 265
Query: 293 LITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKK 352
+ +D M E HG+ Q + N + ++ + L + L++ A
Sbjct: 266 SLRSDRFGMY-EPVHGSAPDIAGQGK------ANPLGTVLSAALMLRYSFGLEKEAAA-- 316
Query: 353 FAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKISDNLRDALQKN 405
+E+ ++DG+ T DL + G +ST + +++ + L ++
Sbjct: 317 ----IEKAVDDVLQDGYCTGDLQVANGKV---VSTIELTDRLIEKLNNSAAGP 362
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET:
ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB:
1j1w_A*
Length = 741
Score = 118 bits (297), Expect = 3e-27
Identities = 39/230 (16%), Positives = 78/230 (33%), Gaps = 17/230 (7%)
Query: 136 GDQYRA--TDFQFPSKGKLILKFVGDDGQTI-EKEVFDSPGSGIAMAMYNLDDSIRNFAR 192
++Y + FQ P+ G + + + G+ + E+ V I D I+++ +
Sbjct: 417 AEEYGSHDKTFQIPADGVV--RVTDESGKLLLEQSVEAG---DIWRMCQAKDAPIQDWVK 471
Query: 193 AAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITYTHRLIDDM 252
A+ A A P +++D + + L I ++
Sbjct: 472 LAVNRARATNTPAVFWLDPA--RAHDAQVIAKVERYLK---DYDTSGLDI-RILSPVEAT 525
Query: 253 VAS--SIKWSGGYIWACKNYDGDVQSDIVAQ-GFGSLGLMTSVLITADGKTMETEAAHGT 309
S I+ I N D +D+ G+ M S++ G + A G+
Sbjct: 526 RFSLARIREGKDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMSGGGLFETGAGGS 585
Query: 310 VTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLER 359
+H +Q + +S+ A L H +N + A L++
Sbjct: 586 APKHVQQFLEEGYLRWDSLGEFLALAASLEHLGNAYKNPKALVLASTLDQ 635
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics, JCSG,
PSI, protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
c.77.1.1
Length = 366
Score = 117 bits (293), Expect = 6e-27
Identities = 69/396 (17%), Positives = 125/396 (31%), Gaps = 51/396 (12%)
Query: 10 VVSLDGD----EMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIK 65
+ L GD E+ R ++++ + + + D + + +
Sbjct: 15 IAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICL 74
Query: 66 NCGVGIKCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPGWK 125
+ + +R +L PI + K
Sbjct: 75 EADAIFLGSVGGPKWDDLPPEKRP--EIGGLLALRKMLNLYANIRPIKVYRSLVHVSPLK 132
Query: 126 KPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDD 185
+ +I D + + + G EK G +Y+
Sbjct: 133 EKVI---------GSGVDLVTVRELSYGVYYGQPRGLDEEK--------GFDTMIYDRKT 175
Query: 186 SIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITYT 245
R AR A + A R+ + K +L S ++ + NE+ E+ + T
Sbjct: 176 VER-IARTAFEIAKNRRKKVTSVDKANVLYS-SMLWRKVVNEVAR-EYP------DVELT 226
Query: 246 HRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETE 304
H +D+ I + + N GD+ SD A GSLGL+ S G E
Sbjct: 227 HIYVDNAAMQLILKPSQFDVILTTNMFGDILSDESAALPGSLGLLPSASF---GDKNLYE 283
Query: 305 AAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKT 364
A G+ ++ N IA I + L H + E A +ER
Sbjct: 284 PAGGSAPDIAGKNI------ANPIAQILSLAMMLEHSFGMVEEARK------IERAVELV 331
Query: 365 VEDGFMTKDLALLIGPEQDWLSTTDFIEKISDNLRD 400
+E+G+ T+D+A + +ST+ + I L +
Sbjct: 332 IEEGYRTRDIA---EDPEKAVSTSQMGDLICKKLEE 364
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein,
isocitrate/isopropylmalate dehydrogenase-like fold,
oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus
thiooxidans}
Length = 429
Score = 116 bits (292), Expect = 8e-27
Identities = 77/432 (17%), Positives = 140/432 (32%), Gaps = 66/432 (15%)
Query: 3 KIKVT-KPVVSL---DG------DEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLT 52
++V +P++ DG M ++ + I + L
Sbjct: 20 VLQVPDQPIIPFIEGDGIGCDVTPAMRSVV-DAAVAKVYGGQRQIAWMELFAGQKAVQLY 78
Query: 53 DDQVTI--DAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIFRE 110
+ + + AI+ V IK T ++ N+ + F
Sbjct: 79 GEGQYLPDETMAAIREYKVAIKGPLETPVGGGIRSLNVAMRQD--LDLYVCLRPVRYFEG 136
Query: 111 PIICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKEVFD 170
+ P P +I ++ + + I++F+ ++ + D
Sbjct: 137 ----TPSPMRHPEKVDMVIFRENSEDIYAGIEWPAGSPEAEKIIRFLREEMGVTKIRFPD 192
Query: 171 SPGSGIAMAMYNLDDSIRNFARAAMQYALARQLP-LYLSTKDTILKSYDGRFKNIFNEIF 229
S I + + + S R R QYAL P + L K I+K +G F++ +
Sbjct: 193 --SSAIGIKPVSTEGSERLIRRTI-QYALEHGKPSVSLVHKGNIMKFTEGGFRDWGYALA 249
Query: 230 EAEFKNQ---------------------FDELGITYTHRLIDDMVASSI------KWSGG 262
E EF + ++ I +I D++A + +
Sbjct: 250 EREFAGRVFTWRQKAAISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQQILLRPEDY 309
Query: 263 YIWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKE 322
+ A N +GD SD +A G +G+ ++ E A HGT Q +
Sbjct: 310 SVVATLNLNGDYVSDALAAEVGGIGMAPGANLSDTHAIFE--ATHGTAPDIAGQGK---- 363
Query: 323 TSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQ 382
N + I + L H + A+ + T+ G +T DLA L G
Sbjct: 364 --ANPSSLILSAVMMLEHLG-------WGEAAQAIVAAMNATIAAGEVTGDLAALRGDVP 414
Query: 383 DWLSTTDFIEKI 394
LSTT+F +
Sbjct: 415 -ALSTTEFTAAL 425
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase,
decarboxylating dehydrogenase, leucine biosynthesis;
HET: IPM; 2.00A {Thiobacillus ferrooxidans} SCOP:
c.77.1.1
Length = 358
Score = 112 bits (281), Expect = 2e-25
Identities = 70/403 (17%), Positives = 131/403 (32%), Gaps = 54/403 (13%)
Query: 1 MKKIKVTKPVVSLDGD----EMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQV 56
MKKI + GD E+ Q++ +L ++ + D +DD +
Sbjct: 1 MKKIAI------FAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPL 54
Query: 57 TIDAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSN 116
+ I A + +R L P
Sbjct: 55 PAASLQLAMAADAVILGAVGGPRWDAYPPAKRPE---QGLLRLRKGLDLYANLRPA---- 107
Query: 117 VPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKEVFDSPGSGI 176
++ P + + R D + + F GQ EV D G
Sbjct: 108 --QIFPQLLDASPLR----PELVRDVDILVVRELTGDIYF----GQPRGLEVIDGKRRGF 157
Query: 177 AMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQ 236
+Y+ +D IR A A + A R+ L K +L++ ++ + E+
Sbjct: 158 NTMVYD-EDEIRRIAHVAFRAAQGRRKQLCSVDKANVLETTR-LWREVVTEVAR------ 209
Query: 237 FDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLIT 295
D + +H +D+ I+ + + N GD+ SD +Q GS+G++ S +
Sbjct: 210 -DYPDVRLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLG 268
Query: 296 ADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAE 355
E A + + G+ N +A+I + L H + +A+
Sbjct: 269 ------EGRAMYEPIHGSAPDIA-GQ-DKANPLATILSVAMMLRHSLNAEP------WAQ 314
Query: 356 NLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKISDNL 398
+E + ++ G T D+A P + T + + L
Sbjct: 315 RVEAAVQRVLDQGLRTADIA---APGTPVIGTKAMGAAVVNAL 354
>1g2u_A IPMDH, 3-isopropylmalate dehydrogenase; beta-barrel, NAD binding,
oxidoreductase; 2.10A {Thermus thermophilus HB8} SCOP:
c.77.1.1 PDB: 1osj_A 1gc8_A 1xaa_A 1osi_A 1hex_A 1xab_A
2ztw_A* 1gc9_A 1ipd_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A
1xac_A 1xad_A
Length = 345
Score = 109 bits (274), Expect = 1e-24
Identities = 61/394 (15%), Positives = 110/394 (27%), Gaps = 57/394 (14%)
Query: 10 VVSLDGD----EMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIK 65
V L GD E+T ++++ L + E F D + ++
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 66 NCGVGIKCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPGWK 125
+ + K ++ ++R P + K
Sbjct: 63 EAEAVLLGSVGGPK---WDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLK 119
Query: 126 KPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDD 185
+ I G +L G E +
Sbjct: 120 EEIARGVD-------------------VLIVRELTGGIYFGEPRGMSEAEAWNTERYSKP 160
Query: 186 SIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITYT 245
+ AR A + A R+ + K +L+ + K + + +
Sbjct: 161 EVERVARVAFEVARKRRKHVVSVDKANVLEVGEFWRKTVE--------EVGRGYPDVALE 212
Query: 246 HRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETE 304
H+ +D M ++ + + N GD+ SD+ + GSLGL+ S + T E
Sbjct: 213 HQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRG--TPVFE 270
Query: 305 AAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKT 364
HG+ + N A+I + L H L E A +E K
Sbjct: 271 PVHGSAPDIAGKGI------ANPTAAILSAAMMLEHAFGLVELARK------VEDAVAKA 318
Query: 365 VEDGFMTKDLALLIGPEQDWLSTTDFIEKISDNL 398
+ + DL G T F + +L
Sbjct: 319 LLET-PPPDLG---GS----AGTEAFTATVLRHL 344
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium,
manganese, NAD, oxidoreductase; HET: NAD; 2.00A
{Pseudomonas putida} PDB: 3fmx_X*
Length = 364
Score = 102 bits (254), Expect = 2e-22
Identities = 53/410 (12%), Positives = 116/410 (28%), Gaps = 62/410 (15%)
Query: 1 MKKIKVTKPVVSLDGD----EMTRIIWQLIQENLIHPYLDIKIEYFDL-SIQNRDLTDDQ 55
++ ++ GD E+ ++++ + L ++ + F+ S
Sbjct: 3 AHSFRIA----AIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKM 58
Query: 56 VTIDAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICS 115
+ D A +K A D+ R + P+
Sbjct: 59 MPDDWAEQLKQYDAIYFGAVGWPDKVPDH-----ISLWGSLLKFRREFDQYVNIRPVRLF 113
Query: 116 NVPRLIPGWKKP----IIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKEVFDS 171
+K ++ R +Y + ++
Sbjct: 114 PGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMF---------------------ENT 152
Query: 172 PGSGIAMAMYNLDDSIRNFARAAMQYALARQLP-LYLSTKDTILKSYDGRFKNIFNEIFE 230
+ + + A A R+ + +TK + +
Sbjct: 153 ENEIVIQESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEA--- 209
Query: 231 AEFKNQFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLM 289
+++ + ID + A + + + N GD+ SD+ G++G+
Sbjct: 210 ----MAAHYPHVSWDKQHIDILCARFVLQPERFDVVVASNLFGDILSDLGPACAGTIGIA 265
Query: 290 TSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAE 349
S + + + GK + N IA I++ L + DE
Sbjct: 266 PSANLNPE----RNFPSLFEPVHGSAPDIFGKNIA-NPIAMIWSGALMLEFLGQGDER-- 318
Query: 350 LKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKISDNLR 399
++ +++ + + DG +T D+ G LST ISD L
Sbjct: 319 YQRAHDDMLNAIERVIADGSVTPDMG---GT----LSTQQVGAAISDTLA 361
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus
tokodaii} SCOP: c.77.1.1
Length = 336
Score = 98.0 bits (243), Expect = 3e-21
Identities = 54/367 (14%), Positives = 109/367 (29%), Gaps = 67/367 (18%)
Query: 35 LDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKS 94
L I+ + + + + D+ I + +K + +
Sbjct: 33 LPIEYIEVEAGDRALARYGEALPKDSLKIIDKADIILKG-------------PVGESAAD 79
Query: 95 PNGTIRNILGGIIFREPIICSNVPRL-IPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLI 153
+R I P ++P + I+I R D Y+ + +
Sbjct: 80 VVVKLRQIYDMYANIRP--AKSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVSDGVAVG 137
Query: 154 LKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTI 213
+K + A+ + +AL R+ + K +
Sbjct: 138 MKIITRFA-------------------------SERIAKVGLNFALRRRKKVTCVHKANV 172
Query: 214 LKSYDGRFKNIFNEIFEAEFKNQFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDG 272
++ DG F + + + + Y+ +D A+ ++ + + +N G
Sbjct: 173 MRITDGLFAEACRSVLKGK---------VEYSEMYVDAAAANLVRNPQMFDVIVTENVYG 223
Query: 273 DVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIF 332
D+ SD +Q GSLG+ S I E + N A +
Sbjct: 224 DILSDEASQIAGSLGIAPSANIGDKKALFEPVHGAA--------FDIAGKNIGNPTAFLL 275
Query: 333 AWTRGLLHRAKLDENAELKKFAENLERVCIKTV-EDGFMTKDLALLIGPEQDWLSTTDFI 391
+ + +L + K + LE E +T D+ G +T D I
Sbjct: 276 SVSMMYERMYELSNDDRYIKASRALENAIYLVYKERKALTPDVG---GN----ATTDDLI 328
Query: 392 EKISDNL 398
+I + L
Sbjct: 329 NEIYNKL 335
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
HET: NAP CIT; 1.80A {Thermus thermophilus HB8}
Length = 496
Score = 94.7 bits (235), Expect = 4e-20
Identities = 62/372 (16%), Positives = 111/372 (29%), Gaps = 61/372 (16%)
Query: 36 DIKIEYFDLSIQ-NRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKS 94
+ E + R V + +I+ V +K T KS
Sbjct: 48 PLAYEVREAGASVFRRGIASGVPQETIESIRKTRVVLKGPLETPV---------GYGEKS 98
Query: 95 PNGTIRNILGGIIFREPI-ICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLI 153
N T+R + P+ NVP G +++ R D Y
Sbjct: 99 ANVTLRKLFETYANVRPVREFPNVPTPYAGRGIDLVVVRENVEDLYAG------------ 146
Query: 154 LKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTI 213
E +P + + + S + A + ++ +TK I
Sbjct: 147 ------------IEHMQTPSVAQTLKLISWKGSEKIVRFAFELARAEGRKKVHCATKSNI 194
Query: 214 LKSYDGRFKNIFNEIFEAEFKNQFDELGITYTHRLIDDMVASSIKWSGGYIWACKNYDGD 273
+K +G K F ++ E+ + +V + + N +GD
Sbjct: 195 MKLAEGTLKRAFEQV-AQEYPDIE--AVHIIVDNAAHQLVK---RPEQFEVIVTTNMNGD 248
Query: 274 VQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFA 333
+ SD+ + G LG S I + E GK N A + +
Sbjct: 249 ILSDLTSGLIGGLGFAPSANIGNEVAIFEA-------VHGSAPKYAGK-NVINPTAVLLS 300
Query: 334 WTRGLLHRAKLDENAELKKFAENLERVCIKTVEDG-FMTKDLALLIGPEQDWLSTTDFIE 392
L + + + +E + T+E+G +T D+ TT++ E
Sbjct: 301 AVMMLRYLEEFATA-------DLIENALLYTLEEGRVLTGDV----VGYDRGAKTTEYTE 349
Query: 393 KISDNLRDALQK 404
I NL +K
Sbjct: 350 AIIQNLGKTPRK 361
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating
dehydrogenase, lysine biosynthesis; 1.85A {Thermus
thermophilus}
Length = 333
Score = 89.8 bits (222), Expect = 1e-18
Identities = 62/368 (16%), Positives = 111/368 (30%), Gaps = 66/368 (17%)
Query: 35 LDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKS 94
L ++ + + + V + I +C + A + + +
Sbjct: 29 LPLEFVEAEAGWETFERRGTSVPEETVEKILSCHATLFGAATSPTRKVPG-------FFG 81
Query: 95 PNGTIRNILGGIIFREPIICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLIL 154
+R L P VP PG ++I R Y + ++
Sbjct: 82 AIRYLRRRLDLYANVRPAKSRPVPGSRPGVD--LVIVRENTEGLYVEQERRY-------- 131
Query: 155 KFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLS-TKDTI 213
++ + D+ S A RAA++ A R K +
Sbjct: 132 ---------LDVAIADAVISKKA---------SERIGRAALRIAEGRPRKTLHIAHKANV 173
Query: 214 LKSYDGRFKNIFNEIFEAEFKNQFDELGITYTHRLIDDMVASSIKW-SGGYIWACKNYDG 272
L G F + E+ + D + ++D+ + + N G
Sbjct: 174 LPLTQGLFLDTVKEVAK-------DFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLG 226
Query: 273 DVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIF 332
D+ SD+ A G LGL S T E HG+ + N A+I
Sbjct: 227 DILSDLAAGLVGGLGLAPS--GNIGDTTAVFEPVHGSAPDIAGKGI------ANPTAAIL 278
Query: 333 AWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIE 392
+ L + K+ A+ +E+ +E G T DL G +T F E
Sbjct: 279 SAAMMLDYLG-------EKEAAKRVEKAVDLVLERGPRTPDLG---GD----ATTEAFTE 324
Query: 393 KISDNLRD 400
+ + L+
Sbjct: 325 AVVEALKS 332
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 58.0 bits (140), Expect = 4e-09
Identities = 62/400 (15%), Positives = 115/400 (28%), Gaps = 181/400 (45%)
Query: 120 LIPGWKKPIIIGRHAFGDQYR--------------ATDFQFPSKGKLILKFVG------- 158
L+P Q + A D + + +L+ KF+G
Sbjct: 21 LVP-------TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE 73
Query: 159 DDGQTIEKEV-------FDS---PGSGIAMAMYNLDDS-----------IRNF--ARAAM 195
+V F++ G+ I L I+N+ AR
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 196 QYALARQLP--LYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQ------FDELGITY-TH 246
+ ++ L+ + + G + + A F Q F+EL Y T+
Sbjct: 134 KRPFDKKSNSALFRAVGE-------GNAQ-----LV-AIFGGQGNTDDYFEELRDLYQTY 180
Query: 247 R-LIDDMVASS------------------------IKW------------------SG-- 261
L+ D++ S ++W S
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 262 -G------YIWACKNYD---GDVQSDIV-AQGFGSLGLMTSVLI-TADGKTMET--EAAH 307
G Y+ K G+++S + A G S GL+T+V I D + E+ +
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH-SQGLVTAVAIAETD--SWESFFVSVR 297
Query: 308 GTVTR----HYRQHQQGKETS------TNSIA----------SIFAWTRGLLHRAKLDE- 346
+T R ++ TS +S+ SI L + ++ +
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI----SN-LTQEQVQDY 352
Query: 347 ----NAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQ 382
N+ L ++V I +L+ G +
Sbjct: 353 VNKTNSHL---PAG-KQVEI------------SLVNGAKN 376
Score = 41.5 bits (97), Expect = 3e-04
Identities = 36/252 (14%), Positives = 67/252 (26%), Gaps = 109/252 (43%)
Query: 153 ILKFVGDDGQ------TIEKEVF-DS--PGSGIAMAMYNLDDSIRNFARAAMQYALA--- 200
+L F+G ++ + DS G+ M L SI N + +Q +
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM--L--SISNLTQEQVQDYVNKTN 357
Query: 201 RQLP----LYLS---TKDTI--------LKSYDGRFKNI------------FNEIFEAEF 233
LP + +S + L + + F+E + +F
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE-RKLKF 416
Query: 234 KNQFDELGIT------Y----THRLIDDMVASSIKWSGGYIWACKNYDGDVQSDIVAQGF 283
N+F L + + + D+V +++ ++ D
Sbjct: 417 SNRF--LPVASPFHSHLLVPASDLINKDLVKNNVSFNA--------------KD------ 454
Query: 284 GSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFA--------WT 335
+ V T DG + R S + I W
Sbjct: 455 ----IQIPVYDTFDGSDL-------------RVL------SGSISERIVDCIIRLPVKWE 491
Query: 336 RGLLHRAK--LD 345
+A LD
Sbjct: 492 TTTQFKATHILD 503
Score = 39.9 bits (93), Expect = 0.001
Identities = 44/291 (15%), Positives = 78/291 (26%), Gaps = 155/291 (53%)
Query: 44 LSIQNRDLTDDQV--TIDA--AH---------AIKN--------------CGV-----GI 71
LSI +LT +QV ++ +H ++ N G+
Sbjct: 339 LSI--SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 72 KCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIF--REPIICSNVPRLIPGWKKPII 129
K + DQ+R+ P F R+ SN R +P
Sbjct: 397 KAPS-GLDQSRI-----------P------------FSERKLKF-SN--RFLP------- 422
Query: 130 IGRHA-FGDQY--RATDFQFPSKGKLILKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDS 186
+ + F A+D LI K + + + I + +Y+ D
Sbjct: 423 VA--SPFHSHLLVPASD--------LINKDLVKNNVSF-------NAKDIQIPVYDTFDG 465
Query: 187 IRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITYTH 246
D L+ G +I +
Sbjct: 466 -----------------------SD--LRVLSG---SI--------------------SE 477
Query: 247 RLIDDMVASS-IKWSGGYIWACKNYDGDVQSDIVAQGFGS-----LGLMTS 291
R++ D + +KW + + I+ FG LG++T
Sbjct: 478 RIV-DCIIRLPVKWE-----TTTQFKA---THILD--FGPGGASGLGVLTH 517
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 35.2 bits (80), Expect = 0.025
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Query: 295 TADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTR--GLLHRAKLDENAELKK 352
T G M +E+ T R H + +I WTR GL+ +
Sbjct: 633 TFGGDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSANNI-------- 684
Query: 353 FAENLERVCIKTVEDGFMTKDLALLIGPE 381
AE +E++ ++T M +L L+ PE
Sbjct: 685 IAEGIEKMGVRTFSQKEMAFNLLGLLTPE 713
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine
biosynthesis, NAD, structural genomics, PSI, protein
structure initiative; 1.65A {Mycobacterium tuberculosis}
SCOP: c.77.1.1 PDB: 2g4o_A
Length = 337
Score = 31.0 bits (69), Expect = 0.49
Identities = 52/341 (15%), Positives = 95/341 (27%), Gaps = 41/341 (12%)
Query: 36 DIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKSP 95
++ +DL + T + + ++N + A + +
Sbjct: 30 GVQKTSYDLGARRFHATGEVLPDSVVAELRNHDAILLGAIGDPSVPS------GVLERGL 83
Query: 96 NGTIRNILGGIIFREPIICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILK 155
+R L N+ +P + F +
Sbjct: 84 LLRLRFELD--------HHINL--------RPARLYPGVASPLSGNPGIDFVVVREGTEG 127
Query: 156 FVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILK 215
+G I +P N +R A + A R+ L L K +L
Sbjct: 128 PYTGNGGAIR---VGTPNEVATEVSVNTAFGVRRVVADAFERARRRRKHLTLVHKTNVLT 184
Query: 216 SYDGRFKNIFNEIFEAEFKNQFDELGITYTHRLIDDMVASSIKWSGGYIWACKNYDGDVQ 275
G + +E+ E + Y H + + I N GD+
Sbjct: 185 FAGGLWLRTVDEVGECYPDVEVA-----YQHVDAATIHMITDPGRFDVI-VTDNLFGDII 238
Query: 276 SDIVAQGFGSLGLMTSVLITADGKTMET-EAAHGTVTRHYRQHQQGKETSTNSIASIFAW 334
+D+ A G +GL S I A E HG+ G+ + + A+I +
Sbjct: 239 TDLAAAVCGGIGLAASGNIDATRANPSMFEPVHGSA-----PDIAGQGIA-DPTAAIMSV 292
Query: 335 TRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLA 375
L H L E+ + +E + T D+
Sbjct: 293 ALLLSH---LGEHDAAARVDRAVEAHLATRGSERLATSDVG 330
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.0 bits (66), Expect = 1.1
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 26/48 (54%)
Query: 151 KL--ILKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQ 196
KL LK DD +P A+A+ +A M+
Sbjct: 24 KLQASLKLYADD---------SAP----ALAI-----------KATME 47
Score = 29.2 bits (64), Expect = 2.0
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 343 KLDENAELKKFAEN-LERVCIK-TVE 366
KL A LK +A++ + IK T+E
Sbjct: 24 KL--QASLKLYADDSAPALAIKATME 47
>3ofq_U 50S ribosomal protein L24; protein biosynthesis, ribosomes, RNA,
tRNA, transfer, antibi EXIT, peptidyl, ribosomal
subunit, large; 3.10A {Escherichia coli} PDB: 2j28_U*
3fik_U 2wwq_U 3ofr_U* 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U
3i1r_U 3i1t_U 3i20_U 3i22_U 3kcr_U 3orb_U* 3e1b_O 3e1d_O
2qam_U* 1p85_S 1p86_S ...
Length = 102
Score = 28.1 bits (63), Expect = 4.1
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 76 ITADQARVKEFNLKKMWKSPNGTIRNILGGIIFRE-PIICSNVPRLIPGWKKPIIIG 131
+++ + V+ NL K + P N GGI+ +E I SNV K +G
Sbjct: 28 LSSGKVIVEGINLVKKHQKPVPA-LNQPGGIVEKEAAIQVSNVAIFNAATGKADRVG 83
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD,
transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Length = 271
Score = 28.1 bits (62), Expect = 4.2
Identities = 12/81 (14%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 329 ASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTT 388
+ R R + + +F+ NL+ + I + AL + E+ L
Sbjct: 138 CNGVVLHRLQCVRGFGEWIDSIVEFSSNLQNMNIDISAFSCIA---ALAMVTERHGLKEP 194
Query: 389 DFIEKISDNLRDALQKNLSIS 409
+E++ + + + L+ +++ +
Sbjct: 195 KRVEELQNKIVNCLKDHVTFN 215
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix,
trasnscription regulator, structural genomics, PSI-2;
2.01A {Silicibacter pomeroyi dss-3}
Length = 152
Score = 27.8 bits (61), Expect = 4.3
Identities = 12/95 (12%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 76 ITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPGWKKPIIIGRHAF 135
+T Q + L+ + +P T + + + R++ ++ +I R
Sbjct: 38 VTVGQRAI----LEGLSLTPGATAPQLGA----ALQMKRQYISRILQEVQRAGLIERRTN 89
Query: 136 GDQYRATDFQFPSKGKLILKFVGDDGQTIEKEVFD 170
+ R+ + +G+ I+ + D +
Sbjct: 90 PEHARSHRYWLTPRGEAIITAIRADEMAKLALFSE 124
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative,
northeast structural genomics consortium, NESG, HR5546A,
LMNB1_human; 2.39A {Homo sapiens}
Length = 144
Score = 27.6 bits (61), Expect = 4.9
Identities = 15/108 (13%), Positives = 37/108 (34%), Gaps = 18/108 (16%)
Query: 216 SYDGRFKNIFN------EIFEAEFKNQFDELGITYTHRLIDDMVASSIKWSGGY--IWAC 267
DG+F + N + E + + ++Y + + +G IWA
Sbjct: 34 DVDGKFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYK------YTSRYVLKAGQTVTIWAA 87
Query: 268 K-NYDGDVQSDIVAQG---FGSLGLMTSVLITADGKTMETEAAHGTVT 311
+D++ + +G+ + +L + G+ + + T
Sbjct: 88 NAGVTASPPTDLIWKNQNSWGTGEDVKVILKNSQGEEVAQRSTVFKTT 135
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidase,
hydrolase, PSI-2; 2.70A {Bacteroides fragilis nctc 9343}
Length = 692
Score = 27.5 bits (60), Expect = 5.4
Identities = 9/55 (16%), Positives = 18/55 (32%)
Query: 236 QFDELGITYTHRLIDDMVASSIKWSGGYIWACKNYDGDVQSDIVAQGFGSLGLMT 290
+ E T TH ++ Y+W ++ + + GL+T
Sbjct: 508 FYPETFQTKTHEYQWSIIKDHPYIIASYLWNMFDFAVPMWTRGGVPARNMKGLIT 562
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor
ligand binding domain, binding, metal-binding, nucleus,
phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB:
3kmz_B* 3a9e_B* 1xap_A* 2lbd_A* 3lbd_A* 4lbd_A*
Length = 266
Score = 27.7 bits (61), Expect = 5.6
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 335 TRGLLHRAKLDENAE-LKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEK 393
R +H A + + FA L + + E G ++ LI ++ L D ++
Sbjct: 138 NRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSA--ICLICGDRQDLEQPDRVDM 195
Query: 394 ISDNLRDALQK 404
+ + L +AL+
Sbjct: 196 LQEPLLEALKV 206
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; HET:
FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Length = 2060
Score = 27.1 bits (60), Expect = 7.1
Identities = 13/77 (16%), Positives = 36/77 (46%)
Query: 141 ATDFQFPSKGKLILKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALA 200
A D + S +L+ +++ +++ D+ + + + L++ R F R +A+A
Sbjct: 46 AQDDEPSSVVELVARYIAFVAHEVDEGDEDAHPTNLEVLKLILNEFERAFMRGNDVHAIA 105
Query: 201 RQLPLYLSTKDTILKSY 217
+ + K ++++Y
Sbjct: 106 ANVAGITAKKIGVVRAY 122
>2wa0_A Melanoma-associated antigen 4; immune system, multiple anomalous
dispersion, cancer/testis antigen 1.4, melanoma antigen
family A 4, CT1.4, MAGE-41; 2.30A {Homo sapiens}
Length = 240
Score = 27.1 bits (60), Expect = 7.3
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 183 LDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFE 230
+++ N + L + L TK +L+ +K F IF
Sbjct: 29 FREALSNKVDELAHFLLRKYRAKELVTKAEMLERVIKNYKRCFPVIFG 76
>1q87_A 39 kDa initiator binding protein; INR, core promoter, DNA binding
protein; 2.32A {Trichomonas vaginalis} SCOP: e.47.1.1
PDB: 1q88_A 1q89_A
Length = 221
Score = 26.9 bits (59), Expect = 7.8
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 293 LITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFA 333
L T+ + +++Q +Q K+ + I++I A
Sbjct: 46 LTQKTDGTVMRDFLIEKAAEYFKQPEQPKQNAIEVISAIMA 86
>1s9a_A Pyrocatechase, chlorocatechol 1,2-dioxygenase; beta barrel,
oxidoreductase; HET: HGP TAM; 2.47A {Rhodococcus opacus}
SCOP: b.3.6.1
Length = 257
Score = 26.9 bits (59), Expect = 9.1
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 95 PNGTIRNILGGIIFREPIICSNVPRLIPGWKKPIIIGRHAF-GDQYRATDFQFPSKGKLI 153
G ++ + R +++ I +I + F GD Y +D K +L+
Sbjct: 173 KAGPTGQLMNSYLGRHSWRPAHIHIRITADGYRPLITQLYFEGDPYLDSDSCSAVKSELV 232
Query: 154 LKF--VGDDGQTIEKEVFD 170
L + DG+T + F+
Sbjct: 233 LPVNKIDIDGETWQLVDFN 251
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.137 0.404
Gapped
Lambda K H
0.267 0.0697 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,698,100
Number of extensions: 177340
Number of successful extensions: 808
Number of sequences better than 10.0: 1
Number of HSP's gapped: 758
Number of HSP's successfully gapped: 43
Length of query: 412
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 317
Effective length of database: 3,390,050
Effective search space: 1074645850
Effective search space used: 1074645850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)