HHsearch alignment for GI: 254780903 and conserved domain: COG2202
>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms].
Probab=98.78 E-value=1.1e-06 Score=66.21 Aligned_cols=135 Identities=21% Similarity=0.343 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECHHHHHHCCCCHHHCCCCHH-HHHHHHCCCCHHHHHH
Q ss_conf 899999999999999999999997225974598976897899978899772999433058988-9997608120589999
Q gi|254780903|r 238 RQAKKNKENDTILLEANICVETALSRGRCGLWNFNFDNKKFHLSRSMYEIMGIPYENKTLSFR-AIARLIHYDNKKICEI 316 (766)
Q Consensus 238 ~dit~~r~ae~~l~ese~rl~~al~~a~~GiWd~D~~~~~i~ws~~~~~llG~~~~e~~~s~~-~~~~~vHPdDr~~~~~ 316 (766)
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 173 (232)
T COG2202 95 RDITERKRAEEALRESEERLRALLEASPDGIWVLDEDGRILYANPAAEELLGYSPEEELGRGLSDLIHPEDEERR-ELEL 173 (232)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHCCCHHHHCCCCCHHHH-HHHH
T ss_conf 115778889999875799999999568967999909998999758999986979899827760654034630466-7899
Q ss_pred HHHHHHCCCCEEEEEEEEECCCCCE-EEEEEEEEEEEECCCEE-EEEEEEECCCHHHHHH
Q ss_conf 9999724898489999988698988-99889999998379606-9999984461799999
Q gi|254780903|r 317 ARSVTGKHVKQLDQIFHMRHASGAD-IWIQVRAQMMRTISGGM-NIIGIAMDLTEKYHLE 374 (766)
Q Consensus 317 a~~~~~~~~~~~~~e~Ri~~~DG~~-~Wi~~r~~~i~d~~G~~-~~iGi~~DITErK~ae 374 (766)
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~ 232 (232)
T COG2202 174 ARALAEGRGGPLEIEYRVRRKDGERVRWILSRISPVRD-DGEIVGVVGIARDITERKQAE 232 (232)
T ss_pred HHHHHCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCC-CCCEEEEEEEEECHHHHHHHC
T ss_conf 99975245764058999994389799999987313246-885778999987346899749