HHsearch alignment for GI: 254780903 and conserved domain: COG2202

>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms].
Probab=98.78  E-value=1.1e-06  Score=66.21  Aligned_cols=135  Identities=21%  Similarity=0.343  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECHHHHHHCCCCHHHCCCCHH-HHHHHHCCCCHHHHHH
Q ss_conf             899999999999999999999997225974598976897899978899772999433058988-9997608120589999
Q gi|254780903|r  238 RQAKKNKENDTILLEANICVETALSRGRCGLWNFNFDNKKFHLSRSMYEIMGIPYENKTLSFR-AIARLIHYDNKKICEI  316 (766)
Q Consensus       238 ~dit~~r~ae~~l~ese~rl~~al~~a~~GiWd~D~~~~~i~ws~~~~~llG~~~~e~~~s~~-~~~~~vHPdDr~~~~~  316 (766)
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~  173 (232)
T COG2202          95 RDITERKRAEEALRESEERLRALLEASPDGIWVLDEDGRILYANPAAEELLGYSPEEELGRGLSDLIHPEDEERR-ELEL  173 (232)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHCCCHHHHCCCCCHHHH-HHHH
T ss_conf             115778889999875799999999568967999909998999758999986979899827760654034630466-7899


Q ss_pred             HHHHHHCCCCEEEEEEEEECCCCCE-EEEEEEEEEEEECCCEE-EEEEEEECCCHHHHHH
Q ss_conf             9999724898489999988698988-99889999998379606-9999984461799999
Q gi|254780903|r  317 ARSVTGKHVKQLDQIFHMRHASGAD-IWIQVRAQMMRTISGGM-NIIGIAMDLTEKYHLE  374 (766)
Q Consensus       317 a~~~~~~~~~~~~~e~Ri~~~DG~~-~Wi~~r~~~i~d~~G~~-~~iGi~~DITErK~ae  374 (766)
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~  232 (232)
T COG2202         174 ARALAEGRGGPLEIEYRVRRKDGERVRWILSRISPVRD-DGEIVGVVGIARDITERKQAE  232 (232)
T ss_pred             HHHHHCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCC-CCCEEEEEEEEECHHHHHHHC
T ss_conf             99975245764058999994389799999987313246-885778999987346899749