HHsearch alignment for GI: 254780903 and conserved domain: COG3275

>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms].
Probab=99.50  E-value=5.5e-11  Score=97.24  Aligned_cols=168  Identities=24%  Similarity=0.267  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-EEEECHHHHHHH
Q ss_conf             7675222478999999998603468899389999999999999999999777677888741983012-033169999999
Q gi|254780903|r  550 MSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEMSKIETEKISID-KQNADLIPIINE  628 (766)
Q Consensus       550 isHelrtPL~aI~g~~ell~~~~~~~~~~e~~~~~l~~I~~~~~~l~~lI~diLd~srieag~~~~~-~~~~dl~~~i~~  628 (766)
T Consensus       372 nPHFLFNaLNTIs---a~IR~------npdkAreLi--------------l~LS~yfR~N---L~~~~~~~v~L~kEl~~  425 (557)
T COG3275         372 NPHFLFNALNTIS---AVIRR------NPDKARELI--------------LYLSTYFRYN---LENNTQEIVTLSKELEH  425 (557)
T ss_pred             CHHHHHHHHHHHH---HHHCC------CHHHHHHHH--------------HHHHHHHHHH---HCCCCCEEEEHHHHHHH
T ss_conf             7088888888778---88617------827999999--------------9999999987---34787158655999999


Q ss_pred             HHHHHHH---HHHHCCCEEEEEECCCCE-EEECHHHHHHHHHHHHHHHHHCC----CCCCEEEEEEEEECCEEEEEEEEC
Q ss_conf             9999999---998479589998089978-99868999999999886565346----898889999999799899999978
Q gi|254780903|r  629 GIRLIGS---SAQSKNIKIEKKIPSELF-FNADKRIIKKILFPILSNSIKFT----NNNGKMMIRTSKIGQCVIITIADT  700 (766)
Q Consensus       629 ~~~~~~~---~~~~k~i~l~~~~~~~l~-v~~D~~~l~QVl~NLi~NAik~t----~~~g~I~i~~~~~~~~v~i~V~D~  700 (766)
T Consensus       426 v~AYl~IEkARF~~-rL~v~i~id~~l~~~~i-P~f---ilQPLVENAIKHG~~~~~~~g~V~I~V~~~d~~l~i~VeDn  500 (557)
T COG3275         426 VNAYLSIEKARFGD-RLDVVIDIDEELRQVQI-PSF---ILQPLVENAIKHGISQLKDTGRVTISVEKEDADLRIEVEDN  500 (557)
T ss_pred             HHHHHHHHHHHCCC-CEEEEEECCHHHHHCCC-CHH---HHHHHHHHHHHHCCCCHHCCCCEEEEEEEECCEEEEEEECC
T ss_conf             99999899864488-44799946877753368-616---67788888887536444208817999998088389999418


Q ss_pred             CCCCCHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCC---EEEEEEECCCCEEEEEECCC
Q ss_conf             8978977854304650531467556778876168999999996298---69999798995299997359
Q gi|254780903|r  701 GIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGG---RLKIISQEGKGTIVTICMPQ  766 (766)
Q Consensus       701 G~GI~~e~~~~iF~pF~q~~~~~t~~~~GtGLGLaI~k~iVe~hgG---~I~v~S~~g~Gttf~i~LP~  766 (766)
T Consensus       501 g~li~p~------------------~~~g~giGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~  551 (557)
T COG3275         501 GGLIQPD------------------EEDGTGIGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLPL  551 (557)
T ss_pred             CCCCCCC------------------CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEECC
T ss_conf             8776997------------------78898717889999999864821031378616778689999447