HHsearch alignment for GI: 254780903 and conserved domain: COG3275
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms].
Probab=99.50 E-value=5.5e-11 Score=97.24 Aligned_cols=168 Identities=24% Similarity=0.267 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-EEEECHHHHHHH
Q ss_conf 7675222478999999998603468899389999999999999999999777677888741983012-033169999999
Q gi|254780903|r 550 MSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEMSKIETEKISID-KQNADLIPIINE 628 (766)
Q Consensus 550 isHelrtPL~aI~g~~ell~~~~~~~~~~e~~~~~l~~I~~~~~~l~~lI~diLd~srieag~~~~~-~~~~dl~~~i~~ 628 (766)
T Consensus 372 nPHFLFNaLNTIs---a~IR~------npdkAreLi--------------l~LS~yfR~N---L~~~~~~~v~L~kEl~~ 425 (557)
T COG3275 372 NPHFLFNALNTIS---AVIRR------NPDKARELI--------------LYLSTYFRYN---LENNTQEIVTLSKELEH 425 (557)
T ss_pred CHHHHHHHHHHHH---HHHCC------CHHHHHHHH--------------HHHHHHHHHH---HCCCCCEEEEHHHHHHH
T ss_conf 7088888888778---88617------827999999--------------9999999987---34787158655999999
Q ss_pred HHHHHHH---HHHHCCCEEEEEECCCCE-EEECHHHHHHHHHHHHHHHHHCC----CCCCEEEEEEEEECCEEEEEEEEC
Q ss_conf 9999999---998479589998089978-99868999999999886565346----898889999999799899999978
Q gi|254780903|r 629 GIRLIGS---SAQSKNIKIEKKIPSELF-FNADKRIIKKILFPILSNSIKFT----NNNGKMMIRTSKIGQCVIITIADT 700 (766)
Q Consensus 629 ~~~~~~~---~~~~k~i~l~~~~~~~l~-v~~D~~~l~QVl~NLi~NAik~t----~~~g~I~i~~~~~~~~v~i~V~D~ 700 (766)
T Consensus 426 v~AYl~IEkARF~~-rL~v~i~id~~l~~~~i-P~f---ilQPLVENAIKHG~~~~~~~g~V~I~V~~~d~~l~i~VeDn 500 (557)
T COG3275 426 VNAYLSIEKARFGD-RLDVVIDIDEELRQVQI-PSF---ILQPLVENAIKHGISQLKDTGRVTISVEKEDADLRIEVEDN 500 (557)
T ss_pred HHHHHHHHHHHCCC-CEEEEEECCHHHHHCCC-CHH---HHHHHHHHHHHHCCCCHHCCCCEEEEEEEECCEEEEEEECC
T ss_conf 99999899864488-44799946877753368-616---67788888887536444208817999998088389999418
Q ss_pred CCCCCHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCC---EEEEEEECCCCEEEEEECCC
Q ss_conf 8978977854304650531467556778876168999999996298---69999798995299997359
Q gi|254780903|r 701 GIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGG---RLKIISQEGKGTIVTICMPQ 766 (766)
Q Consensus 701 G~GI~~e~~~~iF~pF~q~~~~~t~~~~GtGLGLaI~k~iVe~hgG---~I~v~S~~g~Gttf~i~LP~ 766 (766)
T Consensus 501 g~li~p~------------------~~~g~giGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~ 551 (557)
T COG3275 501 GGLIQPD------------------EEDGTGIGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLPL 551 (557)
T ss_pred CCCCCCC------------------CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEECC
T ss_conf 8776997------------------78898717889999999864821031378616778689999447