HHsearch alignment for GI: 254780903 and conserved domain: COG3829
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].
Probab=98.52 E-value=1.8e-05 Score=57.39 Aligned_cols=136 Identities=15% Similarity=0.182 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCEEEEECCCCEEEECHHHHHHCCCCHHHCCCCHHHHHHHH-CCCCHHHHH
Q ss_conf 899999999999-999999999997225974598976897899978899772999433058988999760-812058999
Q gi|254780903|r 238 RQAKKNKENDTI-LLEANICVETALSRGRCGLWNFNFDNKKFHLSRSMYEIMGIPYENKTLSFRAIARLI-HYDNKKICE 315 (766)
Q Consensus 238 ~dit~~r~ae~~-l~ese~rl~~al~~a~~GiWd~D~~~~~i~ws~~~~~llG~~~~e~~~s~~~~~~~v-HPdDr~~~~ 315 (766)
T Consensus 99 ~~~~e~~~~~~~~l~~~~~~l~~il~~~~~~l~vvD~~G~~i~~N~~~~~~~gl~~e~~~gk--~~~~v~~~~~~s~~-- 174 (560)
T COG3829 99 LDISEALELIEENLRQLRQRLEAILDSIDDGLLVVDEDGIIIYYNKAYAKLLGLSPEEVLGK--HLLDVVSAGEDSTL-- 174 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCHHHHCCC--CHHHHHHCCCCCEE--
T ss_conf 51498999999999999999999986256745998699968998477898839998998197--18988723677410--
Q ss_pred HHHHHHHCCCCEEEEEEEEECCCCCEEEEEEEEEEEEECCCE-EEEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 999997248984899999886989889988999999837960-6999998446179999999999999999
Q gi|254780903|r 316 IARSVTGKHVKQLDQIFHMRHASGADIWIQVRAQMMRTISGG-MNIIGIAMDLTEKYHLEKRYAEADQRLS 385 (766)
Q Consensus 316 ~a~~~~~~~~~~~~~e~Ri~~~DG~~~Wi~~r~~~i~d~~G~-~~~iGi~~DITErK~ae~~l~ese~rlr 385 (766)
T Consensus 175 --l~-vl~~~kp~~~~~~~~--~~~~~-i~~~-~pv~-~~g~l~G~v~~~~~~~~l~~l~~~~~~~~~~~~ 237 (560)
T COG3829 175 --LE-VLRTGKPIRDVVQTY--NGNKI-IVNV-APVY-ADGQLIGVVGISKDVSELERLTRELEESEGLLR 237 (560)
T ss_pred --HH-HHHCCCCCEEEEEEE--CCCCE-EEEE-CCEE-CCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHC
T ss_conf --11-341588512035530--48734-6764-4473-178278899752024888999999998753220