HHsearch alignment for GI: 254780903 and conserved domain: COG3920
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=99.66 E-value=2.6e-13 Score=114.04 Aligned_cols=188 Identities=21% Similarity=0.297 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---CEE
Q ss_conf 99999998767522247899999999860346889938999999999999999999977767788874198301---203
Q gi|254780903|r 542 TKSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEMSKIETEKISI---DKQ 618 (766)
Q Consensus 542 ~k~efla~isHelrtPL~aI~g~~ell~~~~~~~~~~e~~~~~l~~I~~~~~~l~~lI~diLd~srieag~~~~---~~~ 618 (766)
T Consensus 18 ~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~~-----~~e~~~~----------~~~Ri~sla~~---He~L~~s~~~ 79 (221)
T COG3920 18 EKELLLREIHHRVKNNLQIISSLLRLQARKFEDE-----VLEALRE----------SQNRIQSLALI---HELLYKSGDD 79 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-----HHHHHHH----------HHHHHHHHHHH---HHHHCCCCCC
T ss_conf 8999999999998879999999999777523667-----8999999----------98899999999---9998068865
Q ss_pred EECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECH-HHHHHHHHHHHHHHHHCCC---CCCEEEEEEEEECCE--
Q ss_conf 3169999999999999999847958999808997899868-9999999998865653468---988899999997998--
Q gi|254780903|r 619 NADLIPIINEGIRLIGSSAQSKNIKIEKKIPSELFFNADK-RIIKKILFPILSNSIKFTN---NNGKMMIRTSKIGQC-- 692 (766)
Q Consensus 619 ~~dl~~~i~~~~~~~~~~~~~k~i~l~~~~~~~l~v~~D~-~~l~QVl~NLi~NAik~t~---~~g~I~i~~~~~~~~-- 692 (766)
T Consensus 80 ~~~~~~y~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~ 159 (221)
T COG3920 80 TWDFASYLELLASNLFPSYGGKDIRLILDSGPNVFLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGGR 159 (221)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCE
T ss_conf 17599999999999887627887527882288622673678899999999999889861788899779999998479971
Q ss_pred EEEEEEECCCCCCHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHH-HHCCCEEEEEEECCCCEEEEEECCC
Q ss_conf 9999997889789778543046505314675567788761689999999-9629869999798995299997359
Q gi|254780903|r 693 VIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALT-NLHGGRLKIISQEGKGTIVTICMPQ 766 (766)
Q Consensus 693 v~i~V~D~G~GI~~e~~~~iF~pF~q~~~~~t~~~~GtGLGLaI~k~iV-e~hgG~I~v~S~~g~Gttf~i~LP~ 766 (766)
T Consensus 160 ~~l~v~deg~G~~~~~---------------~-~-~~~g~G~~Lv~~lv~~q~~g~~~~~~~~--Gt~~~i~~~~ 215 (221)
T COG3920 160 FLLTVWDEGGGPPVEA---------------P-L-SRGGFGLQLVERLVPEQLGGELEDERPD--GTEFRLRFPL 215 (221)
T ss_pred EEEEEEECCCCCCCCC---------------C-C-CCCCCHHHHHHHHHHHHCCCEEEEECCC--CEEEEEEEEC
T ss_conf 7999987898988888---------------8-7-8998379999999999679727997499--7799999886