HHsearch alignment for GI: 254780903 and conserved domain: COG5000
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms].
Probab=100.00 E-value=5.2e-38 Score=292.37 Aligned_cols=332 Identities=19% Similarity=0.283 Sum_probs=253.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999999854455158834996997017898883999789428971788165201378999852112456
Q gi|254780903|r 372 HLEKRYAEADQRLSKAIECTSEALVLWDKNDRLVMCNANYQKAYGLPDHVLVPGNARSIIQDAQTRPIIEYRTSDPERSQ 451 (766)
Q Consensus 372 ~ae~~l~ese~rlr~~ie~~~~~i~~~D~~g~i~~~N~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (766)
T Consensus 360 ~ak~~~e~rr~f~E~VLsgvtaGVi~~d~~g~i~t~N~~ae~~l~~~~~~~~G~~-lsa~ap~~~~vf~~~--~a~-~~~ 435 (712)
T COG5000 360 RAKDALEQRRRFLEAVLSGLTAGVIGFDNRGCITTVNPSAEQILGKPFDQLLGQS-LSAIAPELEEVFAEA--GAA-ART 435 (712)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCHHHHHHCCCHHHHHCHH-HHHHHHHHHHHHHHH--HHH-CCC
T ss_conf 8788899999889999815850389974787077626017888468706764402-664213789999976--540-387
Q ss_pred CEEEEEEEC---CCEEEEECCEEC---CCCCEEEEEEEEEHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 405899916---962874223245---69978999886201000112232222222110000178899864445799999
Q gi|254780903|r 452 DMSKEIKLA---DSRWLQINEWCT---HDGGTISVGTDITLLKHNQAQLRESKRRLKATINDLSTSRQILERQKTELSIA 525 (766)
Q Consensus 452 ~~~~e~~~~---dg~~~~i~~~~~---~dg~~v~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 525 (766)
T Consensus 436 ~~~~ev~~~r~g~~rtl~Vq~t~~~~d~~~gyVvt~DDITdLV~AQR--------------------------------- 482 (712)
T COG5000 436 DKRVEVKLAREGEERTLNVQATREPEDNGNGYVVTFDDITDLVIAQR--------------------------------- 482 (712)
T ss_pred CCCEEEECCCCCCCEEEEEEEEECCCCCCCCEEEEECCHHHHHHHHH---------------------------------
T ss_conf 74201000147874156667532144468856999635089999999---------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999887899999999876752224789999999986034688993--8999999999999999999977767
Q gi|254780903|r 526 NAKYQVEKERAETANKTKSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGS--VKYYEYAQDIHYSGQHLLNMINNIL 603 (766)
Q Consensus 526 ~~~l~~~~~~ae~an~~k~efla~isHelrtPL~aI~g~~ell~~~~~~~~~~--e~~~~~l~~I~~~~~~l~~lI~diL 603 (766)
T Consensus 483 --------------s~AW~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~ 548 (712)
T COG5000 483 --------------SAAWGDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFR 548 (712)
T ss_pred --------------HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --------------878999999998872499862200289999883741234899999999999999999999999999
Q ss_pred HHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCC-CEEEECHHHHHHHHHHHHHHHHHCC------
Q ss_conf 788874198301203316999999999999999984795899980899-7899868999999999886565346------
Q gi|254780903|r 604 EMSKIETEKISIDKQNADLIPIINEGIRLIGSSAQSKNIKIEKKIPSE-LFFNADKRIIKKILFPILSNSIKFT------ 676 (766)
Q Consensus 604 d~srieag~~~~~~~~~dl~~~i~~~~~~~~~~~~~k~i~l~~~~~~~-l~v~~D~~~l~QVl~NLi~NAik~t------ 676 (766)
T Consensus 549 afAR----mP~p~~e~~dL~~ll~e~~~L~e~~--~~~i~f~~e~g~epl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~ 622 (712)
T COG5000 549 AFAR----MPAPKLEKSDLRALLKEVSFLYEIG--NDHIVFAAEFGGEPLIGMADATLLGQVFGNLLKNAAEAIEAVEAE 622 (712)
T ss_pred HHHC----CCCCCCCCCHHHHHHHHHHHHHHCC--CCCEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 8714----8998777422999999999999626--877699753189862532489999999999987199875310134
Q ss_pred -CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEE-C
Q ss_conf -89888999999979989999997889789778543046505314675567788761689999999962986999979-8
Q gi|254780903|r 677 -NNNGKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQ-E 754 (766)
Q Consensus 677 -~~~g~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~~iF~pF~q~~~~~t~~~~GtGLGLaI~k~iVe~hgG~I~v~S~-~ 754 (766)
T Consensus 623 e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYv------Ttr~KGTGLGLAiVKkIvEeHGG~leL~da~d 696 (712)
T COG5000 623 ERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALEPYV------TTREKGTGLGLAIVKKIVEEHGGRLELHNAPD 696 (712)
T ss_pred CCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHCCCCE------ECCCCCCCCCHHHHHHHHHHCCCEEEECCCCC
T ss_conf 677643899984479849999810898799678643236714------21656666239999999996388277247899
Q ss_pred CCCEEEEEECCC
Q ss_conf 995299997359
Q gi|254780903|r 755 GKGTIVTICMPQ 766 (766)
Q Consensus 755 g~Gttf~i~LP~ 766 (766)
T Consensus 697 ~~GA~i~i~fp~ 708 (712)
T COG5000 697 FDGAMIRIKFPL 708 (712)
T ss_pred CCCCEEEEECCC
T ss_conf 997679998365