HHsearch alignment for GI: 254780903 and conserved domain: COG5000
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms].
Probab=96.30 E-value=0.091 Score=30.68 Aligned_cols=129 Identities=16% Similarity=0.132 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECHHHHHHCCCCHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 99999999999999997225974598976897899978899772999433058988999760812058999999997248
Q gi|254780903|r 245 ENDTILLEANICVETALSRGRCGLWNFNFDNKKFHLSRSMYEIMGIPYENKTLSFRAIARLIHYDNKKICEIARSVTGKH 324 (766)
Q Consensus 245 ~ae~~l~ese~rl~~al~~a~~GiWd~D~~~~~i~ws~~~~~llG~~~~e~~~s~~~~~~~vHPdDr~~~~~a~~~~~~~ 324 (766)
T Consensus 360 ~ak~~~e~rr~f~E~VLsgvtaGVi~~d~~g~i~t~N~~ae~~l~~~~~~~~G~--~-lsa~ap~~~~vf~~~-~a~~-- 433 (712)
T COG5000 360 RAKDALEQRRRFLEAVLSGLTAGVIGFDNRGCITTVNPSAEQILGKPFDQLLGQ--S-LSAIAPELEEVFAEA-GAAA-- 433 (712)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCHHHHHHCCCHHHHHCH--H-HHHHHHHHHHHHHHH-HHHC--
T ss_conf 878889999988999981585038997478707762601788846870676440--2-664213789999976-5403--
Q ss_pred CCEEEEEEEEECCCCCEEEEEEEEEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 984899999886989889988999999837960699999844617999999999999
Q gi|254780903|r 325 VKQLDQIFHMRHASGADIWIQVRAQMMRTISGGMNIIGIAMDLTEKYHLEKRYAEAD 381 (766)
Q Consensus 325 ~~~~~~e~Ri~~~DG~~~Wi~~r~~~i~d~~G~~~~iGi~~DITErK~ae~~l~ese 381 (766)
T Consensus 434 ~~~~~~ev~~~r-~g~~rtl~Vq~t~~~~d-~~~gyVvt~DDITdLV~AQRs~AW~d 488 (712)
T COG5000 434 RTDKRVEVKLAR-EGEERTLNVQATREPED-NGNGYVVTFDDITDLVIAQRSAAWGD 488 (712)
T ss_pred CCCCCEEEECCC-CCCCEEEEEEEEECCCC-CCCCEEEEECCHHHHHHHHHHHHHHH
T ss_conf 877420100014-78741566675321444-68856999635089999999878999