HHsearch alignment for GI: 254780903 and conserved domain: PRK04069
>PRK04069 serine-protein kinase RsbW; Provisional.
Probab=98.59 E-value=1.4e-06 Score=65.54 Aligned_cols=97 Identities=19% Similarity=0.294 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHCC---CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCEEECCCCCCCCCCCCCHHHH
Q ss_conf 999999999886565346---89888999999979989999997889789778543046505314675567788761689
Q gi|254780903|r 659 RIIKKILFPILSNSIKFT---NNNGKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLA 735 (766)
Q Consensus 659 ~~l~QVl~NLi~NAik~t---~~~g~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~~iF~pF~q~~~~~t~~~~GtGLGLa 735 (766)
T Consensus 41 ~di~LAV~EA~tNaI~Hay~~~~~~~i~i~~~~~~~~l~i~V~D~G~gfD~~~~~~~~~P~~~~~~--l~~~~~gGlGl~ 118 (158)
T PRK04069 41 EDLKIAVSEACTNAVQHAYKEEEVGEINIRFEIYEDRLEIVVADNGDSFDYETTKSKIGPYDPSEP--IDDLREGGLGLF 118 (158)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHCCCCCCCCCCCCC--HHHCCCCCCHHH
T ss_conf 889999999999999975156999479999999599999999991748795674324588888886--111367874099
Q ss_pred HHHHHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf 9999999629869999798995299997
Q gi|254780903|r 736 ISDALTNLHGGRLKIISQEGKGTIVTIC 763 (766)
Q Consensus 736 I~k~iVe~hgG~I~v~S~~g~Gttf~i~ 763 (766)
T Consensus 119 lI~~lmD----eV~~~~--~~Gt~v~m~ 140 (158)
T PRK04069 119 LIETLMD----DVTVYK--DSGVTVSMT 140 (158)
T ss_pred HHHHHCC----EEEEEE--CCCEEEEEE
T ss_conf 9997525----589990--898299999