HHsearch alignment for GI: 254780903 and conserved domain: PRK09470
>PRK09470 cpxA two-component sensor protein; Provisional.
Probab=100.00 E-value=0 Score=380.53 Aligned_cols=235 Identities=25% Similarity=0.371 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998878999999998767522247899999999860346889938999999999999999999977
Q gi|254780903|r 521 ELSIANAKYQVEKERAETANKTKSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMIN 600 (766)
Q Consensus 521 ~L~~~~~~l~~~~~~ae~an~~k~efla~isHelrtPL~aI~g~~ell~~~~~~~~~~e~~~~~l~~I~~~~~~l~~lI~ 600 (766)
T Consensus 221 Ei~~La~~fN~M~~~L~~~~~~q~~f~advSHELRTPLt~i~~~~~ll~~~~-~~------~~~l~~i~~e~~rl~~li~ 293 (461)
T PRK09470 221 EFRAAGASFNQMVTALERMMSSQQRLLSDISHELRTPLTRLQLATALLRRRQ-GE------SKELERIETEAQRLDSMIN 293 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-CC------HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999998645553278999999999864044-78------5999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECC-CCEEEECHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 76778887419830120331699999999999999998479589998089-97899868999999999886565346898
Q gi|254780903|r 601 NILEMSKIETEKISIDKQNADLIPIINEGIRLIGSSAQSKNIKIEKKIPS-ELFFNADKRIIKKILFPILSNSIKFTNNN 679 (766)
Q Consensus 601 diLd~srieag~~~~~~~~~dl~~~i~~~~~~~~~~~~~k~i~l~~~~~~-~l~v~~D~~~l~QVl~NLi~NAik~t~~~ 679 (766)
T Consensus 294 ~lL~lsr~~~~~-~~~~e~~~l~~l~~~v~~~~~~~a~~~~~~l~~~~~~~~~~v~~d~~~l~~vl~NLl~NAikys~~- 371 (461)
T PRK09470 294 DLLVLSRNQVKN-HLVRETIKANSLWSEVLEDAAFEAEQMGKSLTVNQPPGPWPINGNPNALESALENIVRNALRYSHT- 371 (461)
T ss_pred HHHHHHHHCCCC-CCCCCEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHCCC-
T ss_conf 999997620546-555651539999999999999999975976999727875489978999999999999999974899-
Q ss_pred CEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEE
Q ss_conf 88999999979989999997889789778543046505314675567788761689999999962986999979899529
Q gi|254780903|r 680 GKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTI 759 (766)
Q Consensus 680 g~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~~iF~pF~q~~~~~t~~~~GtGLGLaI~k~iVe~hgG~I~v~S~~g~Gtt 759 (766)
T Consensus 372 -~i~v~~~~~~~~~~i~V~D~G~GI~~e~l~~iFepFyR~d~sr~~~~gG~GLGLaIv~~iv~~hgG~i~~~~~~~~G~~ 450 (461)
T PRK09470 372 -KIEVGFSVDKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGLR 450 (461)
T ss_pred -CEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEE
T ss_conf -5899999999999999997799989999987627972289888899997138899999999982998999977998569
Q ss_pred EEEECC
Q ss_conf 999735
Q gi|254780903|r 760 VTICMP 765 (766)
Q Consensus 760 f~i~LP 765 (766)
T Consensus 451 ~~i~LP 456 (461)
T PRK09470 451 LTIWLP 456 (461)
T ss_pred EEEEEE
T ss_conf 999965