HHsearch alignment for GI: 254780903 and conserved domain: PRK10935
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional.
Probab=99.84 E-value=3.9e-17 Score=141.62 Aligned_cols=190 Identities=20% Similarity=0.279 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHH
Q ss_conf 9876752224789999999----986034688993899999999999999999997776778887419830120331699
Q gi|254780903|r 548 AKMSHELRTPLNAILGFSE----VIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEMSKIETEKISIDKQNADLI 623 (766)
Q Consensus 548 a~isHelrtPL~aI~g~~e----ll~~~~~~~~~~e~~~~~l~~I~~~~~~l~~lI~diLd~srieag~~~~~~~~~dl~ 623 (766)
T Consensus 366 ~~IARELHDsLaQ~Ls~lkiq~~lL~~~l~~~~~~~~~~~~l~~i~~~l~~a~~qlReLl~~fR-----l--~l~~~~L~ 438 (568)
T PRK10935 366 ATIARELHDSLAQVLSYLKIQLTLLKRSLPKSCDNAKAESIIADFDEGLSDAYRQLRELLTTFR-----L--TIQEANLG 438 (568)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----C--CCCCCCHH
T ss_conf 8999984412665789999999999987422565388999999999999999999999999832-----2--67756879
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEC-CCCEEEECH-HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC-CEEEEEEEEC
Q ss_conf 99999999999999847958999808-997899868-99999999988656534689888999999979-9899999978
Q gi|254780903|r 624 PIINEGIRLIGSSAQSKNIKIEKKIP-SELFFNADK-RIIKKILFPILSNSIKFTNNNGKMMIRTSKIG-QCVIITIADT 700 (766)
Q Consensus 624 ~~i~~~~~~~~~~~~~k~i~l~~~~~-~~l~v~~D~-~~l~QVl~NLi~NAik~t~~~g~I~i~~~~~~-~~v~i~V~D~ 700 (766)
T Consensus 439 ~AL~~~~~~~~~q---~~~~i~l~~~l~~~~l~~~~~i~llrIvqEALtN~~KHA-~A~~V~V~~~~~~~~~v~l~V~Dn 514 (568)
T PRK10935 439 SALEEMLDQLRNQ---TSAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHA-NASEIAVSCVTNPDGEVTVSIRDD 514 (568)
T ss_pred HHHHHHHHHHHHH---CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEEEECCCCEEEEEEEEC
T ss_conf 9999999999751---194699970688777888899999999999999999808-998799999974898799999779
Q ss_pred CCCCCHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCC
Q ss_conf 897897785430465053146755677887616899999999629869999798995299997359
Q gi|254780903|r 701 GIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIVTICMPQ 766 (766)
Q Consensus 701 G~GI~~e~~~~iF~pF~q~~~~~t~~~~GtGLGLaI~k~iVe~hgG~I~v~S~~g~Gttf~i~LP~ 766 (766)
T Consensus 515 G~Gf~~~~-----------------~-~~~h~GL~iMrERa~~lgG~l~i~s~p~~GT~V~l~~P~ 562 (568)
T PRK10935 515 GVGIGELK-----------------E-PEGHYGLNIMHERASRLGGTLTFSQNPGGGTTVSLTFPS 562 (568)
T ss_pred CCCCCCCC-----------------C-CCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECC
T ss_conf 94789878-----------------8-899857599999999669989999779996699998589