HHsearch alignment for GI: 254780903 and conserved domain: PRK11073
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional.
Probab=100.00 E-value=0 Score=420.71 Aligned_cols=322 Identities=18% Similarity=0.292 Sum_probs=245.3
Q ss_pred HHHHHHHHHHEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHCCCHHHHH-HHHHHHCCCCCCCEEEEEEECCC-
Q ss_conf 9999854455158834996997017898883999789428971788165201378-99985211245640589991696-
Q gi|254780903|r 385 SKAIECTSEALVLWDKNDRLVMCNANYQKAYGLPDHVLVPGNARSIIQDAQTRPI-IEYRTSDPERSQDMSKEIKLADS- 462 (766)
Q Consensus 385 r~~ie~~~~~i~~~D~~g~i~~~N~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~e~~~~dg- 462 (766)
T Consensus 10 ~~Il~~~~d~Iiv~D~~g~I~~~N~aa~~l~g~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 88 (348)
T PRK11073 10 GQILNSLINSILLLDDNLAIHYANPAAQQLLAQSSRKLFGTPLPELLSYFSLNIELMQESLQAGQGFTDNEVTL-VIDGR 88 (348)
T ss_pred HHHHHHHHHHHEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCHHHHHHHHHCCCCCCCCEEEE-EECCE
T ss_conf 99998660796499897970128399999978598998599689984665301899999997389741323999-98996
Q ss_pred -EEEEECCEECCCCCEEEEEEEEEHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -2874223245699789998862010001122322222221100001788998644457999999999999999988789
Q gi|254780903|r 463 -RWLQINEWCTHDGGTISVGTDITLLKHNQAQLRESKRRLKATINDLSTSRQILERQKTELSIANAKYQVEKERAETANK 541 (766)
Q Consensus 463 -~~~~i~~~~~~dg~~v~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~ae~an~ 541 (766)
T Consensus 89 ~~~~~~~~~~~~~~~~l~~~~di~~~k-----------------------------------~l~~e~~~---~~~--~~ 128 (348)
T PRK11073 89 SHILSLTAQRLPEGMILLEMAPMDNQR-----------------------------------RLSQEQLQ---HAQ--QV 128 (348)
T ss_pred EEEEEEEEEECCCCEEEEEEEECHHHH-----------------------------------HHHHHHHH---HHH--HH
T ss_conf 999999999825868999999627999-----------------------------------99999999---999--99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 99999998767522247899999999860346889938999999999999999999977767788874198301203316
Q gi|254780903|r 542 TKSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEMSKIETEKISIDKQNAD 621 (766)
Q Consensus 542 ~k~efla~isHelrtPL~aI~g~~ell~~~~~~~~~~e~~~~~l~~I~~~~~~l~~lI~diLd~srieag~~~~~~~~~d 621 (766)
T Consensus 129 ~~~e~~~~iaHelrnPL~~I~g~~~ll~~~~----~d~~~~e~~~~i~~~~~rl~~li~~ll~~~~~~~------~~~~~ 198 (348)
T PRK11073 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSKAL----PDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT------HITES 198 (348)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CCCCC
T ss_conf 9999998401874785799999999997417----9989999999999999999999999864412688------77547
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCE-EEECHHHHHHHHHHHHHHHHHC-CCCCCEEEEEEEEECC--------
Q ss_conf 99999999999999998479589998089978-9986899999999988656534-6898889999999799--------
Q gi|254780903|r 622 LIPIINEGIRLIGSSAQSKNIKIEKKIPSELF-FNADKRIIKKILFPILSNSIKF-TNNNGKMMIRTSKIGQ-------- 691 (766)
Q Consensus 622 l~~~i~~~~~~~~~~~~~k~i~l~~~~~~~l~-v~~D~~~l~QVl~NLi~NAik~-t~~~g~I~i~~~~~~~-------- 691 (766)
T Consensus 199 l~~~~~~~~~~~~~~~-~~~i~i~~~~~~~~~~i~~d~~~l~qVl~NLl~NAik~~~~~~g~i~i~~~~~~~~~i~~~~~ 277 (348)
T PRK11073 199 IHKVAERVVQLVSLEL-PDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEITLRTRTAFQLTLHGERY 277 (348)
T ss_pred HHHHHHHHHHHHHHHC-CCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 9999999999999856-578099996078887264468788999999999999983669977999996433322145323
Q ss_pred --EEEEEEEECCCCCCHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEECC
Q ss_conf --89999997889789778543046505314675567788761689999999962986999979899529999735
Q gi|254780903|r 692 --CVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIVTICMP 765 (766)
Q Consensus 692 --~v~i~V~D~G~GI~~e~~~~iF~pF~q~~~~~t~~~~GtGLGLaI~k~iVe~hgG~I~v~S~~g~Gttf~i~LP 765 (766)
T Consensus 278 ~~~~~i~V~D~G~GI~~e~~~~iF~pf~-----tt-k~~GtGLGL~ivk~ive~hgG~I~v~S~~g~-t~F~i~lP 346 (348)
T PRK11073 278 RLAARIDIEDNGPGIPPHLQDTLFYPMV-----SG-REGGTGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLP 346 (348)
T ss_pred CEEEEEEEEECCCCCCHHHHHHHCCCCC-----CC-CCCCCCHHHHHHHHHHHHCCCEEEEEEECCE-EEEEEEEE
T ss_conf 3048999999088789899997377836-----79-9898177899999999986998999982891-99999996