HHsearch alignment for GI: 254780903 and conserved domain: PRK11073
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional.
Probab=98.55 E-value=3.5e-06 Score=62.52 Aligned_cols=118 Identities=11% Similarity=0.077 Sum_probs=80.8
Q ss_pred HHHHHCCCCCEEEEECCCCEEEECHHHHHHCCCCHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEEECC
Q ss_conf 99972259745989768978999788997729994330589889997608120589999999972489848999998869
Q gi|254780903|r 258 ETALSRGRCGLWNFNFDNKKFHLSRSMYEIMGIPYENKTLSFRAIARLIHYDNKKICEIARSVTGKHVKQLDQIFHMRHA 337 (766)
Q Consensus 258 ~~al~~a~~GiWd~D~~~~~i~ws~~~~~llG~~~~e~~~s~~~~~~~vHPdDr~~~~~a~~~~~~~~~~~~~e~Ri~~~ 337 (766)
T Consensus 10 ~~Il~~~~d~Iiv~D~~g~I~~~N~aa~~l~g~~~~~~~G~--~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~ 85 (348)
T PRK11073 10 GQILNSLINSILLLDDNLAIHYANPAAQQLLAQSSRKLFGT--PLPELLSYFSLNI-ELMQESLQAGQGFTDNEVTLV-I 85 (348)
T ss_pred HHHHHHHHHHHEEECCCCCEEEECHHHHHHHCCCHHHHCCC--CHHHHHCCCCCCH-HHHHHHHHCCCCCCCCEEEEE-E
T ss_conf 99998660796499897970128399999978598998599--6899846653018-999999973897413239999-8
Q ss_pred CCCEEEEEEEEEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 8988998899999983796069999984461799999999999999
Q gi|254780903|r 338 SGADIWIQVRAQMMRTISGGMNIIGIAMDLTEKYHLEKRYAEADQR 383 (766)
Q Consensus 338 DG~~~Wi~~r~~~i~d~~G~~~~iGi~~DITErK~ae~~l~ese~r 383 (766)
T Consensus 86 ~~~~~~~~~~~~~~~~--~--~~l~~~~di~~~k~l~~e~~~~~~~ 127 (348)
T PRK11073 86 DGRSHILSLTAQRLPE--G--MILLEMAPMDNQRRLSQEQLQHAQQ 127 (348)
T ss_pred CCEEEEEEEEEEECCC--C--EEEEEEEECHHHHHHHHHHHHHHHH
T ss_conf 9969999999998258--6--8999999627999999999999999