HHsearch alignment for GI: 254780903 and conserved domain: TIGR01924
>TIGR01924 rsbW_low_gc anti-sigma B factor; InterPro: IPR010193 This entry describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter . RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex . Low ATP level or environmental stress causes the dephosphorylation of RsbV .; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0045892 negative regulation of transcription DNA-dependent.
Probab=96.96 E-value=0.002 Score=42.68 Aligned_cols=91 Identities=18% Similarity=0.240 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHCCC---CC-CEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCEEECCCCCCCCCCCCCHHHH
Q ss_conf 999999998865653468---98-88999999979989999997889789778543046505314675567788761689
Q gi|254780903|r 660 IIKKILFPILSNSIKFTN---NN-GKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLA 735 (766)
Q Consensus 660 ~l~QVl~NLi~NAik~t~---~~-g~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~~iF~pF~q~~~~~t~~~~GtGLGLa 735 (766)
T Consensus 43 D~KIAVSEA~TN~V~HAYke~~nvG~~~i~F~iyEDklev~vsD~G~SFD~d~~k~~lGPyd~~~~i~~L~eG--GLGLF 120 (161)
T TIGR01924 43 DLKIAVSEACTNAVKHAYKEEENVGEISIEFEIYEDKLEVIVSDEGDSFDLDTKKQELGPYDKSEDIDQLREG--GLGLF 120 (161)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCEEEEEEEEEEEEEEEEEEEECCCCCCCHHHHHHHCCCCCCCCCHHHHHCC--CCHHH
T ss_conf 0677665553033112230898367899888788757899982078641110025325897957875432017--71366
Q ss_pred HHHHHHHHCCCEEEEEEECCC
Q ss_conf 999999962986999979899
Q gi|254780903|r 736 ISDALTNLHGGRLKIISQEGK 756 (766)
Q Consensus 736 I~k~iVe~hgG~I~v~S~~g~ 756 (766)
T Consensus 121 Li----etLMD~V~~~~~sGV 137 (161)
T TIGR01924 121 LI----ETLMDEVKVYEDSGV 137 (161)
T ss_pred HH----HCCCCEEEEEECCCE
T ss_conf 45----103761699832860