HHsearch alignment for GI: 254780903 and conserved domain: TIGR02938

>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..
Probab=100.00  E-value=0  Score=358.40  Aligned_cols=463  Identities=17%  Similarity=0.228  Sum_probs=354.5

Q ss_pred             HHHHHHHHCCCCCEEEEECCCCEEEECHHHHHHCCCCHHHCCCCHHHHHH--HHCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             99999972259745989768978999788997729994330589889997--6081205899999999724898489999
Q gi|254780903|r  255 ICVETALSRGRCGLWNFNFDNKKFHLSRSMYEIMGIPYENKTLSFRAIAR--LIHYDNKKICEIARSVTGKHVKQLDQIF  332 (766)
Q Consensus       255 ~rl~~al~~a~~GiWd~D~~~~~i~ws~~~~~llG~~~~e~~~s~~~~~~--~vHPdDr~~~~~a~~~~~~~~~~~~~e~  332 (766)
T Consensus         4 e~~RqtVdqAp~AISITDlKANILyaN~AF~~iTGY~~eE~iGkNES~LSn~tTPp---eVYQaLWg~la~-qkPW~G~L   79 (496)
T TIGR02938         4 ELYRQTVDQAPVAISITDLKANILYANDAFSEITGYAKEEVIGKNESVLSNRTTPP---EVYQALWGSLAE-QKPWAGKL   79 (496)
T ss_pred             HHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCH---HHHHHHHHHHHH-CCCCCCCE
T ss_conf             56888662288036431014569999566321558656211125540126858871---799999988630-58986510


Q ss_pred             EEECCCCCEEEEEEEEEEEEECCCEE-EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECHHH
Q ss_conf             98869898899889999998379606-99999844617999999999999999999985445515883499699701789
Q gi|254780903|r  333 HMRHASGADIWIQVRAQMMRTISGGM-NIIGIAMDLTEKYHLEKRYAEADQRLSKAIECTSEALVLWDKNDRLVMCNANY  411 (766)
Q Consensus       333 Ri~~~DG~~~Wi~~r~~~i~d~~G~~-~~iGi~~DITErK~ae~~l~ese~rlr~~ie~~~~~i~~~D~~g~i~~~N~~~  411 (766)
T Consensus        80 lNRrkDg~lYLAeLtvaPvlneaGeT~hflGMHRd~tElh~Leq~V~nQ~l~iE~VV~aaPva~vllD~~gRv~LdN~~y  159 (496)
T TIGR02938        80 LNRRKDGELYLAELTVAPVLNEAGETTHFLGMHRDVTELHRLEQRVANQKLLIEAVVDAAPVAAVLLDEQGRVVLDNLEY  159 (496)
T ss_pred             ECCCCCCCHHHHHHCCCCHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEECCHHH
T ss_conf             00011653002220202000146881587325454357889988897646789999878654100056998688167768


Q ss_pred             HHHHCCCHHHHCCCCCH----HHHCCCHHHHHHHHHHHCCCCCCCEEEEEEECCC---EEEEECCEEC------------
Q ss_conf             88839997894289717----8816520137899985211245640589991696---2874223245------------
Q gi|254780903|r  412 QKAYGLPDHVLVPGNAR----SIIQDAQTRPIIEYRTSDPERSQDMSKEIKLADS---RWLQINEWCT------------  472 (766)
Q Consensus       412 ~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~dg---~~~~i~~~~~------------  472 (766)
T Consensus       160 k~La~----DL~v~epa~~~l~lLre~~~e~~-~~~~~q~~afsn~E~rfD~ggGR~~RWlSc~g~~i~~e~~~ad~fF~  234 (496)
T TIGR02938       160 KKLAS----DLKVEEPAELLLKLLREELAEDL-EELENQEKAFSNKELRFDRGGGRSARWLSCAGRVIRIEEDSADSFFA  234 (496)
T ss_pred             HHHHH----HCCCCCCHHHHHHHHHHHHHHHH-HHHCCCCCEECCCEEEEECCCCCCCCCEEECCCEEEEECCCCCEEEC
T ss_conf             87874----21414417999998508765278-65202110101540354168878850102023235311364011561


Q ss_pred             --CCCCEEEEEEEEEHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             --699789998862010001122322222221100001788998644457999999999999999988789999999987
Q gi|254780903|r  473 --HDGGTISVGTDITLLKHNQAQLRESKRRLKATINDLSTSRQILERQKTELSIANAKYQVEKERAETANKTKSEFLAKM  550 (766)
Q Consensus       473 --~dg~~v~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~ae~an~~k~efla~i  550 (766)
T Consensus       235 ~~e~~yLLLti~Dis~lr~~Qe~~R--------------------------l-~aLqAlmAEEE~le---~~rEtl~AA-  283 (496)
T TIGR02938       235 AAEKRYLLLTIDDISELRKKQERAR--------------------------L-SALQALMAEEEKLE---ALRETLSAA-  283 (496)
T ss_pred             CCCCCCEEEEEHHHHHHHHHHHHHH--------------------------H-HHHHHHHHHHHHHH---HHHHHHHHH-
T ss_conf             6899830566364788899999999--------------------------9-99899998998888---876668888-


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHH
Q ss_conf             67522247899999999860346889938999999999999999999977767788874198301203316999999999
Q gi|254780903|r  551 SHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEMSKIETEKISIDKQNADLIPIINEGI  630 (766)
Q Consensus       551 sHelrtPL~aI~g~~ell~~~~~~~~~~e~~~~~l~~I~~~~~~l~~lI~diLd~srieag~~~~~~~~~dl~~~i~~~~  630 (766)
T Consensus       284 Ihrl~gP~NlisaA~~~L~RRlGD~AGn~a~~~~lqqa~~ag~e~~e~L~~~IP~------s~~e~~~pVNlN~~lrdvi  357 (496)
T TIGR02938       284 IHRLQGPLNLISAAISVLERRLGDDAGNDAVAALLQQALAAGREALEALEKVIPQ------SDAEAVVPVNLNQVLRDVI  357 (496)
T ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC------CCCCCCCCCCHHHHHHHHH
T ss_conf             8885287107889999863205832379799999999988639999975057887------7244546642778999999


Q ss_pred             HHHHHHHHHCCCEEEEEECCCCE-EEECHHHHHHHHHHHHHHHHHCCCCCC----EEEEEEEEECCEEEEEEEECCCCCC
Q ss_conf             99999998479589998089978-998689999999998865653468988----8999999979989999997889789
Q gi|254780903|r  631 RLIGSSAQSKNIKIEKKIPSELF-FNADKRIIKKILFPILSNSIKFTNNNG----KMMIRTSKIGQCVIITIADTGIGIP  705 (766)
Q Consensus       631 ~~~~~~~~~k~i~l~~~~~~~l~-v~~D~~~l~QVl~NLi~NAik~t~~~g----~I~i~~~~~~~~v~i~V~D~G~GI~  705 (766)
T Consensus       358 ~l~T~rLLA~GIvVdW~Pa~~LP~~~G~e~~lRslfK~LvdNAIeaM~~~~~~RREL~i~t~~~~~li~~~i~DsGPGIP  437 (496)
T TIGR02938       358 TLLTERLLAAGIVVDWQPAAVLPAVLGSESRLRSLFKALVDNAIEAMAQKGVKRRELSILTAVEDDLIRVEIEDSGPGIP  437 (496)
T ss_pred             HHHHHHHHHCCCEECCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEEECCCCCC
T ss_conf             86105575575415165610162220785257899999999999985307841023101022308568999973587987


Q ss_pred             HHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEECC
Q ss_conf             778543046505314675567788761689999999962986999979899529999735
Q gi|254780903|r  706 KSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIVTICMP  765 (766)
Q Consensus       706 ~e~~~~iF~pF~q~~~~~t~~~~GtGLGLaI~k~iVe~hgG~I~v~S~~g~Gttf~i~LP  765 (766)
T Consensus       438 ~dlr~kvFEPFFttK~~~--Gr~h~G~GL~vaqeiVa~H~G~i~~D~dy~eGCri~vef~  495 (496)
T TIGR02938       438 ADLRLKVFEPFFTTKASS--GRKHVGMGLAVAQEIVAKHAGLIDVDDDYREGCRIVVEFE  495 (496)
T ss_pred             CCCCEEEECCCCCCCCCC--CCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCEEEEEEC
T ss_conf             244225236732268887--7842334626889997504987973688877735777623