HHsearch alignment for GI: 254780903 and conserved domain: TIGR02938
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..
Probab=100.00 E-value=0 Score=358.40 Aligned_cols=463 Identities=17% Similarity=0.228 Sum_probs=354.5
Q ss_pred HHHHHHHHCCCCCEEEEECCCCEEEECHHHHHHCCCCHHHCCCCHHHHHH--HHCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 99999972259745989768978999788997729994330589889997--6081205899999999724898489999
Q gi|254780903|r 255 ICVETALSRGRCGLWNFNFDNKKFHLSRSMYEIMGIPYENKTLSFRAIAR--LIHYDNKKICEIARSVTGKHVKQLDQIF 332 (766)
Q Consensus 255 ~rl~~al~~a~~GiWd~D~~~~~i~ws~~~~~llG~~~~e~~~s~~~~~~--~vHPdDr~~~~~a~~~~~~~~~~~~~e~ 332 (766)
T Consensus 4 e~~RqtVdqAp~AISITDlKANILyaN~AF~~iTGY~~eE~iGkNES~LSn~tTPp---eVYQaLWg~la~-qkPW~G~L 79 (496)
T TIGR02938 4 ELYRQTVDQAPVAISITDLKANILYANDAFSEITGYAKEEVIGKNESVLSNRTTPP---EVYQALWGSLAE-QKPWAGKL 79 (496)
T ss_pred HHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCH---HHHHHHHHHHHH-CCCCCCCE
T ss_conf 56888662288036431014569999566321558656211125540126858871---799999988630-58986510
Q ss_pred EEECCCCCEEEEEEEEEEEEECCCEE-EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECHHH
Q ss_conf 98869898899889999998379606-99999844617999999999999999999985445515883499699701789
Q gi|254780903|r 333 HMRHASGADIWIQVRAQMMRTISGGM-NIIGIAMDLTEKYHLEKRYAEADQRLSKAIECTSEALVLWDKNDRLVMCNANY 411 (766)
Q Consensus 333 Ri~~~DG~~~Wi~~r~~~i~d~~G~~-~~iGi~~DITErK~ae~~l~ese~rlr~~ie~~~~~i~~~D~~g~i~~~N~~~ 411 (766)
T Consensus 80 lNRrkDg~lYLAeLtvaPvlneaGeT~hflGMHRd~tElh~Leq~V~nQ~l~iE~VV~aaPva~vllD~~gRv~LdN~~y 159 (496)
T TIGR02938 80 LNRRKDGELYLAELTVAPVLNEAGETTHFLGMHRDVTELHRLEQRVANQKLLIEAVVDAAPVAAVLLDEQGRVVLDNLEY 159 (496)
T ss_pred ECCCCCCCHHHHHHCCCCHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEECCHHH
T ss_conf 00011653002220202000146881587325454357889988897646789999878654100056998688167768
Q ss_pred HHHHCCCHHHHCCCCCH----HHHCCCHHHHHHHHHHHCCCCCCCEEEEEEECCC---EEEEECCEEC------------
Q ss_conf 88839997894289717----8816520137899985211245640589991696---2874223245------------
Q gi|254780903|r 412 QKAYGLPDHVLVPGNAR----SIIQDAQTRPIIEYRTSDPERSQDMSKEIKLADS---RWLQINEWCT------------ 472 (766)
Q Consensus 412 ~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~dg---~~~~i~~~~~------------ 472 (766)
T Consensus 160 k~La~----DL~v~epa~~~l~lLre~~~e~~-~~~~~q~~afsn~E~rfD~ggGR~~RWlSc~g~~i~~e~~~ad~fF~ 234 (496)
T TIGR02938 160 KKLAS----DLKVEEPAELLLKLLREELAEDL-EELENQEKAFSNKELRFDRGGGRSARWLSCAGRVIRIEEDSADSFFA 234 (496)
T ss_pred HHHHH----HCCCCCCHHHHHHHHHHHHHHHH-HHHCCCCCEECCCEEEEECCCCCCCCCEEECCCEEEEECCCCCEEEC
T ss_conf 87874----21414417999998508765278-65202110101540354168878850102023235311364011561
Q ss_pred --CCCCEEEEEEEEEHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --699789998862010001122322222221100001788998644457999999999999999988789999999987
Q gi|254780903|r 473 --HDGGTISVGTDITLLKHNQAQLRESKRRLKATINDLSTSRQILERQKTELSIANAKYQVEKERAETANKTKSEFLAKM 550 (766)
Q Consensus 473 --~dg~~v~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~ae~an~~k~efla~i 550 (766)
T Consensus 235 ~~e~~yLLLti~Dis~lr~~Qe~~R--------------------------l-~aLqAlmAEEE~le---~~rEtl~AA- 283 (496)
T TIGR02938 235 AAEKRYLLLTIDDISELRKKQERAR--------------------------L-SALQALMAEEEKLE---ALRETLSAA- 283 (496)
T ss_pred CCCCCCEEEEEHHHHHHHHHHHHHH--------------------------H-HHHHHHHHHHHHHH---HHHHHHHHH-
T ss_conf 6899830566364788899999999--------------------------9-99899998998888---876668888-
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHH
Q ss_conf 67522247899999999860346889938999999999999999999977767788874198301203316999999999
Q gi|254780903|r 551 SHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEMSKIETEKISIDKQNADLIPIINEGI 630 (766)
Q Consensus 551 sHelrtPL~aI~g~~ell~~~~~~~~~~e~~~~~l~~I~~~~~~l~~lI~diLd~srieag~~~~~~~~~dl~~~i~~~~ 630 (766)
T Consensus 284 Ihrl~gP~NlisaA~~~L~RRlGD~AGn~a~~~~lqqa~~ag~e~~e~L~~~IP~------s~~e~~~pVNlN~~lrdvi 357 (496)
T TIGR02938 284 IHRLQGPLNLISAAISVLERRLGDDAGNDAVAALLQQALAAGREALEALEKVIPQ------SDAEAVVPVNLNQVLRDVI 357 (496)
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC------CCCCCCCCCCHHHHHHHHH
T ss_conf 8885287107889999863205832379799999999988639999975057887------7244546642778999999
Q ss_pred HHHHHHHHHCCCEEEEEECCCCE-EEECHHHHHHHHHHHHHHHHHCCCCCC----EEEEEEEEECCEEEEEEEECCCCCC
Q ss_conf 99999998479589998089978-998689999999998865653468988----8999999979989999997889789
Q gi|254780903|r 631 RLIGSSAQSKNIKIEKKIPSELF-FNADKRIIKKILFPILSNSIKFTNNNG----KMMIRTSKIGQCVIITIADTGIGIP 705 (766)
Q Consensus 631 ~~~~~~~~~k~i~l~~~~~~~l~-v~~D~~~l~QVl~NLi~NAik~t~~~g----~I~i~~~~~~~~v~i~V~D~G~GI~ 705 (766)
T Consensus 358 ~l~T~rLLA~GIvVdW~Pa~~LP~~~G~e~~lRslfK~LvdNAIeaM~~~~~~RREL~i~t~~~~~li~~~i~DsGPGIP 437 (496)
T TIGR02938 358 TLLTERLLAAGIVVDWQPAAVLPAVLGSESRLRSLFKALVDNAIEAMAQKGVKRRELSILTAVEDDLIRVEIEDSGPGIP 437 (496)
T ss_pred HHHHHHHHHCCCEECCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEEECCCCCC
T ss_conf 86105575575415165610162220785257899999999999985307841023101022308568999973587987
Q ss_pred HHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEECC
Q ss_conf 778543046505314675567788761689999999962986999979899529999735
Q gi|254780903|r 706 KSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIVTICMP 765 (766)
Q Consensus 706 ~e~~~~iF~pF~q~~~~~t~~~~GtGLGLaI~k~iVe~hgG~I~v~S~~g~Gttf~i~LP 765 (766)
T Consensus 438 ~dlr~kvFEPFFttK~~~--Gr~h~G~GL~vaqeiVa~H~G~i~~D~dy~eGCri~vef~ 495 (496)
T TIGR02938 438 ADLRLKVFEPFFTTKASS--GRKHVGMGLAVAQEIVAKHAGLIDVDDDYREGCRIVVEFE 495 (496)
T ss_pred CCCCEEEECCCCCCCCCC--CCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCEEEEEEC
T ss_conf 244225236732268887--7842334626889997504987973688877735777623