HHsearch alignment for GI: 254780903 and conserved domain: TIGR02938

>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..
Probab=99.12  E-value=4.3e-10  Score=90.78  Aligned_cols=256  Identities=10%  Similarity=0.062  Sum_probs=174.8

Q ss_pred             CCCCEEEEECCCCCEEEECCCHHHHCCCCHHHHCCCCHHHHCCCCCCCHHHHHCCCCHHEEEEEECCCCCCEEEEEEECC
Q ss_conf             78978999969980899714205551997889607610432054433202321153100001233157782599997423
Q gi|254780903|r  126 LSESFILLAQPNELVFASSTKNSHYIGKKIGEIIPELSRSRSRSKTVQMSEASLDQQPYHVLSVNLPHNSGSILIINSRV  205 (766)
Q Consensus       126 ~~~~~i~i~d~~g~i~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (766)
T Consensus        12 qAp~AISITDlKANILyaN~AF~~iTGY~~eE~iGkNES~LSn~tTPpeVYQaLWg~-------la~qkPW~G~LlNRrk   84 (496)
T TIGR02938        12 QAPVAISITDLKANILYANDAFSEITGYAKEEVIGKNESVLSNRTTPPEVYQALWGS-------LAEQKPWAGKLLNRRK   84 (496)
T ss_pred             HCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-------HHHCCCCCCCEECCCC
T ss_conf             288036431014569999566321558656211125540126858871799999988-------6305898651000011


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECHHHH
Q ss_conf             21012345565545687887899999999888899999999999999999999997225974598976897899978899
Q gi|254780903|r  206 PLLRLWREEVTLEVVFFSIISALLLFILFSYYRQAKKNKENDTILLEANICVETALSRGRCGLWNFNFDNKKFHLSRSMY  285 (766)
Q Consensus       206 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~a~~~dit~~r~ae~~l~ese~rl~~al~~a~~GiWd~D~~~~~i~ws~~~~  285 (766)
T Consensus        85 Dg~lYLAeLtva--PvlneaGeT~h--flGMHRd~tElh~Leq~V~nQ~l~iE~VV~aaPva~vllD~~gRv~LdN~~yk  160 (496)
T TIGR02938        85 DGELYLAELTVA--PVLNEAGETTH--FLGMHRDVTELHRLEQRVANQKLLIEAVVDAAPVAAVLLDEQGRVVLDNLEYK  160 (496)
T ss_pred             CCCHHHHHHCCC--CHHCCCCCCEE--EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEECCHHHH
T ss_conf             653002220202--00014688158--73254543578899888976467899998786541000569986881677688


Q ss_pred             HHCCCCHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCE-EEEEEEEECCCCC-EEEEEEEEEEEEECCCEE-----
Q ss_conf             772999433058988999760812058999999997248984-8999998869898-899889999998379606-----
Q gi|254780903|r  286 EIMGIPYENKTLSFRAIARLIHYDNKKICEIARSVTGKHVKQ-LDQIFHMRHASGA-DIWIQVRAQMMRTISGGM-----  358 (766)
Q Consensus       286 ~llG~~~~e~~~s~~~~~~~vHPdDr~~~~~a~~~~~~~~~~-~~~e~Ri~~~DG~-~~Wi~~r~~~i~d~~G~~-----  358 (766)
T Consensus       161 ~La~-DL~v~e-pa~~~l~lLre~~~e~~~~~~----~q~~afsn~E~rfD~ggGR~~RWlSc~g~~i~~e~~~ad~fF~  234 (496)
T TIGR02938       161 KLAS-DLKVEE-PAELLLKLLREELAEDLEELE----NQEKAFSNKELRFDRGGGRSARWLSCAGRVIRIEEDSADSFFA  234 (496)
T ss_pred             HHHH-HCCCCC-CHHHHHHHHHHHHHHHHHHHC----CCCCEECCCEEEEECCCCCCCCCEEECCCEEEEECCCCCEEEC
T ss_conf             7874-214144-179999985087652786520----2110101540354168878850102023235311364011561


Q ss_pred             -----EEEEEEECCCHHHHHHHHHH--------HHHHHHHHHHHHHHHHEEEE
Q ss_conf             -----99999844617999999999--------99999999998544551588
Q gi|254780903|r  359 -----NIIGIAMDLTEKYHLEKRYA--------EADQRLSKAIECTSEALVLW  398 (766)
Q Consensus       359 -----~~iGi~~DITErK~ae~~l~--------ese~rlr~~ie~~~~~i~~~  398 (766)
T Consensus       235 ~~e~~yLLLti~Dis~lr~~Qe~~Rl~aLqAlmAEEE~le~~rEtl~AAIhrl  287 (496)
T TIGR02938       235 AAEKRYLLLTIDDISELRKKQERARLSALQALMAEEEKLEALRETLSAAIHRL  287 (496)
T ss_pred             CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             68998305663647888999999999998999989988888766688888885