HHsearch alignment for GI: 254780903 and conserved domain: TIGR02938
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..
Probab=99.12 E-value=4.3e-10 Score=90.78 Aligned_cols=256 Identities=10% Similarity=0.062 Sum_probs=174.8
Q ss_pred CCCCEEEEECCCCCEEEECCCHHHHCCCCHHHHCCCCHHHHCCCCCCCHHHHHCCCCHHEEEEEECCCCCCEEEEEEECC
Q ss_conf 78978999969980899714205551997889607610432054433202321153100001233157782599997423
Q gi|254780903|r 126 LSESFILLAQPNELVFASSTKNSHYIGKKIGEIIPELSRSRSRSKTVQMSEASLDQQPYHVLSVNLPHNSGSILIINSRV 205 (766)
Q Consensus 126 ~~~~~i~i~d~~g~i~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (766)
T Consensus 12 qAp~AISITDlKANILyaN~AF~~iTGY~~eE~iGkNES~LSn~tTPpeVYQaLWg~-------la~qkPW~G~LlNRrk 84 (496)
T TIGR02938 12 QAPVAISITDLKANILYANDAFSEITGYAKEEVIGKNESVLSNRTTPPEVYQALWGS-------LAEQKPWAGKLLNRRK 84 (496)
T ss_pred HCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-------HHHCCCCCCCEECCCC
T ss_conf 288036431014569999566321558656211125540126858871799999988-------6305898651000011
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECHHHH
Q ss_conf 21012345565545687887899999999888899999999999999999999997225974598976897899978899
Q gi|254780903|r 206 PLLRLWREEVTLEVVFFSIISALLLFILFSYYRQAKKNKENDTILLEANICVETALSRGRCGLWNFNFDNKKFHLSRSMY 285 (766)
Q Consensus 206 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~a~~~dit~~r~ae~~l~ese~rl~~al~~a~~GiWd~D~~~~~i~ws~~~~ 285 (766)
T Consensus 85 Dg~lYLAeLtva--PvlneaGeT~h--flGMHRd~tElh~Leq~V~nQ~l~iE~VV~aaPva~vllD~~gRv~LdN~~yk 160 (496)
T TIGR02938 85 DGELYLAELTVA--PVLNEAGETTH--FLGMHRDVTELHRLEQRVANQKLLIEAVVDAAPVAAVLLDEQGRVVLDNLEYK 160 (496)
T ss_pred CCCHHHHHHCCC--CHHCCCCCCEE--EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEECCHHHH
T ss_conf 653002220202--00014688158--73254543578899888976467899998786541000569986881677688
Q ss_pred HHCCCCHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCE-EEEEEEEECCCCC-EEEEEEEEEEEEECCCEE-----
Q ss_conf 772999433058988999760812058999999997248984-8999998869898-899889999998379606-----
Q gi|254780903|r 286 EIMGIPYENKTLSFRAIARLIHYDNKKICEIARSVTGKHVKQ-LDQIFHMRHASGA-DIWIQVRAQMMRTISGGM----- 358 (766)
Q Consensus 286 ~llG~~~~e~~~s~~~~~~~vHPdDr~~~~~a~~~~~~~~~~-~~~e~Ri~~~DG~-~~Wi~~r~~~i~d~~G~~----- 358 (766)
T Consensus 161 ~La~-DL~v~e-pa~~~l~lLre~~~e~~~~~~----~q~~afsn~E~rfD~ggGR~~RWlSc~g~~i~~e~~~ad~fF~ 234 (496)
T TIGR02938 161 KLAS-DLKVEE-PAELLLKLLREELAEDLEELE----NQEKAFSNKELRFDRGGGRSARWLSCAGRVIRIEEDSADSFFA 234 (496)
T ss_pred HHHH-HCCCCC-CHHHHHHHHHHHHHHHHHHHC----CCCCEECCCEEEEECCCCCCCCCEEECCCEEEEECCCCCEEEC
T ss_conf 7874-214144-179999985087652786520----2110101540354168878850102023235311364011561
Q ss_pred -----EEEEEEECCCHHHHHHHHHH--------HHHHHHHHHHHHHHHHEEEE
Q ss_conf -----99999844617999999999--------99999999998544551588
Q gi|254780903|r 359 -----NIIGIAMDLTEKYHLEKRYA--------EADQRLSKAIECTSEALVLW 398 (766)
Q Consensus 359 -----~~iGi~~DITErK~ae~~l~--------ese~rlr~~ie~~~~~i~~~ 398 (766)
T Consensus 235 ~~e~~yLLLti~Dis~lr~~Qe~~Rl~aLqAlmAEEE~le~~rEtl~AAIhrl 287 (496)
T TIGR02938 235 AAEKRYLLLTIDDISELRKKQERARLSALQALMAEEEKLEALRETLSAAIHRL 287 (496)
T ss_pred CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 68998305663647888999999999998999989988888766688888885