HHsearch alignment for GI: 254780903 and conserved domain: TIGR02966

>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR; InterPro: IPR014310 Members of this protein are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter found in most Proteobacteria, and related proteins from Gram-positive organisms are excluded. The phoR gene usually is adjacent to the response regulator phoB gene (IPR011879 from INTERPRO)..
Probab=97.74  E-value=0.0005  Score=46.99  Aligned_cols=115  Identities=10%  Similarity=0.020  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCEEEECHHHHHHCCCCHHHCCCCHHHHHHHH-CCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             999999997225974598976897899978899772999433058988999760-8120589999999972489848999
Q gi|254780903|r  253 ANICVETALSRGRCGLWNFNFDNKKFHLSRSMYEIMGIPYENKTLSFRAIARLI-HYDNKKICEIARSVTGKHVKQLDQI  331 (766)
Q Consensus       253 se~rl~~al~~a~~GiWd~D~~~~~i~ws~~~~~llG~~~~e~~~s~~~~~~~v-HPdDr~~~~~a~~~~~~~~~~~~~e  331 (766)
T Consensus         4 ~~~rf~~a~~AlPDavv~ld~~~~I~W~N~~A~~~LGl~~p~D~G--q~i~~l~R~P~-F~~yl~--~~~~-t~~p~~L~   77 (339)
T TIGR02966         4 LLSRFRAAAQALPDAVVVLDEEGQIEWCNKAAERLLGLRWPDDLG--QRITNLIRHPE-FVEYLA--AGRF-TSEPEQLE   77 (339)
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCCCHHHC--CCHHHHCCCHH-HHHHHH--CCCC-CCCCCCEE
T ss_conf             889999999758982999728983786214889862742734507--70212105767-999973--3555-57885311


Q ss_pred             EEEE-CCCCCEEEEEEEEEEEEECCCEEEEEEEEECCCHHHHHHHHHHH
Q ss_conf             9988-69898899889999998379606999998446179999999999
Q gi|254780903|r  332 FHMR-HASGADIWIQVRAQMMRTISGGMNIIGIAMDLTEKYHLEKRYAE  379 (766)
Q Consensus       332 ~Ri~-~~DG~~~Wi~~r~~~i~d~~G~~~~iGi~~DITErK~ae~~l~e  379 (766)
T Consensus        78 --~~~~p~~~~~~l~~r~~PY~~~----~~Ll~~RDvT~l~rLe~mRrD  120 (339)
T TIGR02966        78 --LPDSPINEERVLEIRIMPYGEE----QKLLVARDVTRLRRLEQMRRD  120 (339)
T ss_pred             --ECCCCCCCCCEEEEEEEEECCC----CEEEEEECHHHHHHHHHHHHH
T ss_conf             --0468888664799999975698----379998763689999865343