HHsearch alignment for GI: 254780903 and conserved domain: pfam07310
>pfam07310 PAS_5 PAS domain. This family contains a number of hypothetical bacterial proteins of unknown function approximately 200 residues long. This region is is distantly similar to other PAS domains.
Probab=93.45 E-value=0.55 Score=25.06 Aligned_cols=94 Identities=9% Similarity=0.035 Sum_probs=71.0
Q ss_pred CCEEEEECCCCEE--EECHHHHHHCCCCHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEE
Q ss_conf 7459897689789--99788997729994330589889997608120589999999972489848999998869898899
Q gi|254780903|r 266 CGLWNFNFDNKKF--HLSRSMYEIMGIPYENKTLSFRAIARLIHYDNKKICEIARSVTGKHVKQLDQIFHMRHASGADIW 343 (766)
Q Consensus 266 ~GiWd~D~~~~~i--~ws~~~~~llG~~~~e~~~s~~~~~~~vHPdDr~~~~~a~~~~~~~~~~~~~e~Ri~~~DG~~~W 343 (766)
T Consensus 40 ~file~~~~~~~r~RlaGt~l~~~~G~d~~G-----~~~~~l~~~~~r~~~~~~l~~v~~~~~p~~~~~~~~~~~g~~~~ 114 (137)
T pfam07310 40 VFILERDAPGGAPFRLAGTRLCALFGRELRG-----IPFSALWTEASRREIARVLDVVFDRTLPVLAGVDAEARNGRSLH 114 (137)
T ss_pred CEEEEEECCCCEEEEEECHHHHHHHCCCCCC-----CCHHHHHCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCEE
T ss_conf 3899984799679998178899982998889-----78899619677999999999997589439999778638987015
Q ss_pred EEEEEEEEEECCCEE-EEEEEE
Q ss_conf 889999998379606-999998
Q gi|254780903|r 344 IQVRAQMMRTISGGM-NIIGIA 364 (766)
Q Consensus 344 i~~r~~~i~d~~G~~-~~iGi~ 364 (766)
T Consensus 115 ~e~LlLPL~~d~g~vdriLG~l 136 (137)
T pfam07310 115 FELLLLPLATRSGTPDRFLGLL 136 (137)
T ss_pred EEEEECCCCCCCCCHHHHHHCC
T ss_conf 4355525789999722333104