HHsearch alignment for GI: 254780903 and conserved domain: pfam07310

>pfam07310 PAS_5 PAS domain. This family contains a number of hypothetical bacterial proteins of unknown function approximately 200 residues long. This region is is distantly similar to other PAS domains.
Probab=93.45  E-value=0.55  Score=25.06  Aligned_cols=94  Identities=9%  Similarity=0.035  Sum_probs=71.0

Q ss_pred             CCEEEEECCCCEE--EECHHHHHHCCCCHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEE
Q ss_conf             7459897689789--99788997729994330589889997608120589999999972489848999998869898899
Q gi|254780903|r  266 CGLWNFNFDNKKF--HLSRSMYEIMGIPYENKTLSFRAIARLIHYDNKKICEIARSVTGKHVKQLDQIFHMRHASGADIW  343 (766)
Q Consensus       266 ~GiWd~D~~~~~i--~ws~~~~~llG~~~~e~~~s~~~~~~~vHPdDr~~~~~a~~~~~~~~~~~~~e~Ri~~~DG~~~W  343 (766)
T Consensus        40 ~file~~~~~~~r~RlaGt~l~~~~G~d~~G-----~~~~~l~~~~~r~~~~~~l~~v~~~~~p~~~~~~~~~~~g~~~~  114 (137)
T pfam07310        40 VFILERDAPGGAPFRLAGTRLCALFGRELRG-----IPFSALWTEASRREIARVLDVVFDRTLPVLAGVDAEARNGRSLH  114 (137)
T ss_pred             CEEEEEECCCCEEEEEECHHHHHHHCCCCCC-----CCHHHHHCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCEE
T ss_conf             3899984799679998178899982998889-----78899619677999999999997589439999778638987015


Q ss_pred             EEEEEEEEEECCCEE-EEEEEE
Q ss_conf             889999998379606-999998
Q gi|254780903|r  344 IQVRAQMMRTISGGM-NIIGIA  364 (766)
Q Consensus       344 i~~r~~~i~d~~G~~-~~iGi~  364 (766)
T Consensus       115 ~e~LlLPL~~d~g~vdriLG~l  136 (137)
T pfam07310       115 FELLLLPLATRSGTPDRFLGLL  136 (137)
T ss_pred             EEEEECCCCCCCCCHHHHHHCC
T ss_conf             4355525789999722333104