HHsearch alignment for GI: 254780903 and conserved domain: pfam08448
>pfam08448 PAS_4 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=99.44 E-value=1.2e-12 Score=109.34 Aligned_cols=109 Identities=18% Similarity=0.188 Sum_probs=91.9
Q ss_pred HHCCCCCEEEEECCCCEEEECHHHHHHCCCCHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCC
Q ss_conf 72259745989768978999788997729994330589889997608120589999999972489848999998869898
Q gi|254780903|r 261 LSRGRCGLWNFNFDNKKFHLSRSMYEIMGIPYENKTLSFRAIARLIHYDNKKICEIARSVTGKHVKQLDQIFHMRHASGA 340 (766)
Q Consensus 261 l~~a~~GiWd~D~~~~~i~ws~~~~~llG~~~~e~~~s~~~~~~~vHPdDr~~~~~a~~~~~~~~~~~~~e~Ri~~~DG~ 340 (766)
T Consensus 1 ~d~~p~~i~~~D~~g~i~~~N~a~~~~~g~~~~~~iG~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~ 77 (110)
T pfam08448 1 LDSLPDALAVLDPDGRVRYANAAAAELFGLPPEELLGK--TLAELLPPEDAARLERALRRALEGEEPIDFL-EELLLNGE 77 (110)
T ss_pred CCCCCHHHEEECCCCCEEEEEHHHHHHCCCCHHHHCCC--CCHHCCCCHHHHHHHHHHHHHHCCCCEEEEE-EEECCCCC
T ss_conf 99857353799499969999347466709898998095--1210068034566777899997389558866-43025885
Q ss_pred EEEEEEEEEEEEECCCEE-EEEEEEECCCHHHH
Q ss_conf 899889999998379606-99999844617999
Q gi|254780903|r 341 DIWIQVRAQMMRTISGGM-NIIGIAMDLTEKYH 372 (766)
Q Consensus 341 ~~Wi~~r~~~i~d~~G~~-~~iGi~~DITErK~ 372 (766)
T Consensus 78 ~~~~~~~~~pi~d~~G~~~g~v~~~~DITerKq 110 (110)
T pfam08448 78 ERHYELRLTPLRDPDGEVIGVLVISRDITERRR 110 (110)
T ss_pred CEEEEEEEEEEECCCCCEEEEEEEEEECCHHCC
T ss_conf 200043576689899999999999998833129