HHsearch alignment for GI: 254780903 and conserved domain: smart00086

>smart00086 PAC Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain). PAC motif occurs C-terminal to a subset of all known PAS motifs. It is proposed to contribute to the PAS domain fold.

Probab=98.23  E-value=2.8e-06  Score=63.20  Aligned_cols=42  Identities=31%  Similarity=0.649  Sum_probs=38.9

Q ss_pred             EEEEEEECCCCCEEEEEEEEEEEEECCCEE-EEEEEEECCCHH
Q ss_conf             999998869898899889999998379606-999998446179
Q gi|254780903|r  329 DQIFHMRHASGADIWIQVRAQMMRTISGGM-NIIGIAMDLTEK  370 (766)
Q Consensus       329 ~~e~Ri~~~DG~~~Wi~~r~~~i~d~~G~~-~~iGi~~DITEr  370 (766)
T Consensus         1 ~~e~r~~~~dG~~~w~~~~~~~~~~~~g~~~~~i~~~~DIte~   43 (43)
T smart00086        1 TVEYRLRRKDGSYIWVLVSASPIRDEDGEVEGILGVVRDITER   43 (43)
T ss_pred             CEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCC
T ss_conf             9699999889999999999999999898999999999717798