HHsearch alignment for GI: 254780903 and conserved domain: smart00091

>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).

Probab=97.82  E-value=6.5e-05  Score=53.39  Aligned_cols=56  Identities=16%  Similarity=0.328  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCCHHHHCCCHHH
Q ss_conf             99999998544551588349969970178988839997894289717881652013
Q gi|254780903|r  382 QRLSKAIECTSEALVLWDKNDRLVMCNANYQKAYGLPDHVLVPGNARSIIQDAQTR  437 (766)
Q Consensus       382 ~rlr~~ie~~~~~i~~~D~~g~i~~~N~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  437 (766)
T Consensus         1 ~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~~~~~~   56 (67)
T smart00091        1 ERLRAILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGKSLLELIHPEDRE   56 (67)
T ss_pred             CHHHHHHHHHHHHHEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHCCHHHHH
T ss_conf             97999999655798588699948998859999889099999599899946998999