HHsearch alignment for GI: 254780903 and conserved domain: smart00388

>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.

Probab=99.07  E-value=7.5e-10  Score=89.05  Aligned_cols=65  Identities=48%  Similarity=0.764  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999876752224789999999986034688993899999999999999999997776778887419
Q gi|254780903|r  543 KSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEMSKIETE  611 (766)
Q Consensus       543 k~efla~isHelrtPL~aI~g~~ell~~~~~~~~~~e~~~~~l~~I~~~~~~l~~lI~diLd~srieag  611 (766)
T Consensus         2 ~~~~~~~isHelrtPL~~i~~~~~~l~~~---~~~-~~~~~~~~~i~~~~~~~~~li~~il~~sr~~~~   66 (66)
T smart00388        2 KREFLANLSHELRTPLTAIRGYLELLEDT---ELS-EEQREYLETILRSAERLLRLINDLLDLSRIEAG   66 (66)
T ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHHHCC---CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             88999997698708188899998865302---799-999999998899999999999999999873699