RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780903|ref|YP_003065316.1| two-component sensor histidine
kinase protein [Candidatus Liberibacter asiaticus str. psy62]
(766 letters)
>gnl|CDD|30987 COG0642, BaeS, Signal transduction histidine kinase [Signal
transduction mechanisms].
Length = 336
Score = 158 bits (398), Expect = 7e-39
Identities = 86/281 (30%), Positives = 144/281 (51%), Gaps = 11/281 (3%)
Query: 486 LLKHNQAQLRESKRRLKATINDLSTSRQILERQKTELSIANAKYQVEKERAETANKTKSE 545
LL + + T + S+A+A ++ + + K E
Sbjct: 58 LLLRRLLRPLLLLADAANALAAGLTRLVLASLGSELASLAHALNELLERLERLLRRAKRE 117
Query: 546 FLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEM 605
FLA +SHELRTPL AI G E++ + + E + I + LL ++N++L++
Sbjct: 118 FLANISHELRTPLTAIRGLLELLLEGLLDPQ-----RELLEIIEEEAERLLRLVNDLLDL 172
Query: 606 SKIETE-KISIDKQNADLIPIINEGIRLIGSSAQSKNIKIEKKIPSELFFNADKRIIKKI 664
S++E K+ + + DL ++ E +RL+ AQ K I++ +P + D ++++
Sbjct: 173 SRLEAGTKLKLLLELVDLAELLEEVVRLLAPLAQEKGIELAVDLPELPYVLGDPERLRQV 232
Query: 665 LFPILSNSIKFTNNNGKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPLHNQYD 724
L +LSN+IK+T G++ I + + V I++ DTG GIP+ LE+I +PF + D
Sbjct: 233 LVNLLSNAIKYTPG-GEITISVRQDDEQVTISVEDTGPGIPEEELERIFEPFF----RTD 287
Query: 725 QSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIVTICMP 765
+S G GLGLAI + LHGG + + S+ GKGT TI +P
Sbjct: 288 KSRSGTGLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLP 328
>gnl|CDD|32387 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal
transduction mechanisms].
Length = 890
Score = 128 bits (323), Expect = 5e-30
Identities = 67/277 (24%), Positives = 123/277 (44%), Gaps = 14/277 (5%)
Query: 491 QAQLRESKRRLKATINDLSTSRQILERQKTELSIANAKYQVEKERAETANKTKSEFLAKM 550
L +RRL + LER A+ E+ER +S LA +
Sbjct: 616 SPLLAPEQRRLLDAVLTQIA--LALERVTLAEEAEQARLAAERER------LRSALLASI 667
Query: 551 SHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEMSKIET 610
SH+LRTPL AI+G +E + + L E I + L ++ N+L+M+++++
Sbjct: 668 SHDLRTPLTAIMGAAETLLLDG-EALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQS 726
Query: 611 EKISIDKQNADLIPIINEGIRLIGSSAQSKNIKIEKKIPSEL-FFNADKRIIKKILFPIL 669
+++ + ++ E ++ + I + +P +L + D +I+++L +L
Sbjct: 727 GGVNLKLDWVLVEEVVGEALQRLRKRFTGHKIVVS--VPVDLPLIHVDSPLIEQVLINLL 784
Query: 670 SNSIKFTNNNGKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGG 729
N++K+ ++ I + V+ ++ D G GIP+ LE+I F + + G
Sbjct: 785 ENALKYAPPGSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFYRGNKESAT--RG 842
Query: 730 FGLGLAISDALTNLHGGRLKIISQEGKGTIVTICMPQ 766
GLGLAI + HGG + + G G I +P
Sbjct: 843 VGLGLAICRGIVEAHGGTISAENNPGGGAIFVFTLPV 879
>gnl|CDD|34607 COG5002, VicK, Signal transduction histidine kinase [Signal
transduction mechanisms].
Length = 459
Score = 122 bits (307), Expect = 4e-28
Identities = 69/240 (28%), Positives = 130/240 (54%), Gaps = 15/240 (6%)
Query: 532 EKERAETANKTKSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYS 591
E+E+ E + + EF+A +SHELRTPL ++ + E + E G+ + E A
Sbjct: 217 EQEKVE---RERREFVANVSHELRTPLTSMKSYLEAL------EEGAWEDKEIAPRFLRV 267
Query: 592 GQH----LLNMINNILEMSKIETEKISIDKQNADLIPIINEGI-RLIGSSAQSKNIKIEK 646
+ ++ ++N++L++S+++ + ++K+ + +NE I R + + +
Sbjct: 268 TLNETERMIRLVNDLLQLSRMDNARYQLNKEWINFTAFLNEIINRFEMILKKETIARFVR 327
Query: 647 KIPSE-LFFNADKRIIKKILFPILSNSIKFTNNNGKMMIRTSKIGQCVIITIADTGIGIP 705
IP + ++ D + ++L I+SN++K++ + G++ + + V I+I+D G+GIP
Sbjct: 328 DIPKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQRETWVEISISDQGLGIP 387
Query: 706 KSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIVTICMP 765
K LEKI F + + +GG GLGLAI+ + HGGR+ S+EGKGT + +P
Sbjct: 388 KEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFTLP 447
>gnl|CDD|145582 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and
HSP90-like ATPase. This family represents the
structurally related ATPase domains of histidine kinase,
DNA gyrase B and HSP90.
Length = 111
Score = 102 bits (256), Expect = 4e-22
Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 656 ADKRIIKKILFPILSNSIKFTNNNGKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQP 715
D+ ++++L +L N+IK G++ + + G + IT+ D GIGIP L KI +P
Sbjct: 1 GDEDRLRQVLSNLLDNAIKHAPAGGEIEVTLERDGGRLRITVEDNGIGIPPEDLPKIFEP 60
Query: 716 FEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIVTICMP 765
F + +GG GLGL+I L LHGG + + S+ G GT T +P
Sbjct: 61 FFRTDKD-SRKVGGTGLGLSIVRKLVELHGGTITVESEPGGGTTFTFTLP 109
>gnl|CDD|28956 cd00075, HATPase_c, Histidine kinase-like ATPases; This family
includes several ATP-binding proteins for example:
histidine kinase, DNA gyrase B, topoisomerases, heat
shock protein HSP90, phytochrome-like ATPases and DNA
mismatch repair proteins.
Length = 103
Score = 88.8 bits (220), Expect = 5e-18
Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 661 IKKILFPILSNSIKFTNN-NGKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPL 719
++++L +LSN+IK T G++ I + G + I + D G GIP+ LE+I + F
Sbjct: 1 LQQVLLNLLSNAIKHTPEGGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSD- 59
Query: 720 HNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIVTI 762
+ GG GLGL+I L LHGGR+++ S+ G GT TI
Sbjct: 60 -GSRSRKGGGTGLGLSIVKKLVELHGGRIEVESEPGGGTTFTI 101
>gnl|CDD|33926 COG4191, COG4191, Signal transduction histidine kinase regulating
C4-dicarboxylate transport system [Signal transduction
mechanisms].
Length = 603
Score = 74.2 bits (182), Expect = 1e-13
Identities = 67/287 (23%), Positives = 124/287 (43%), Gaps = 24/287 (8%)
Query: 491 QAQLRESKRRLKATI----NDLSTSRQILERQKTELSIANAKYQVEKERAETANKTKSEF 546
A+L+E++ L+ + DL+ + L+ + E A+ + + + E K
Sbjct: 326 LAELQEARAELERRVEERTADLTRANARLQAEIAERE--QAEAALRRAQDELVQAGKLAA 383
Query: 547 LAKMS----HELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNI 602
L +MS HEL PL AI +++ + E G E A++ L + I
Sbjct: 384 LGQMSAGIAHELNQPLAAIRTYAD--NARLLLERGRT---EEARENLERISALTERMAAI 438
Query: 603 LEMSKIETEKISIDKQNADLIPIINEGIRLIGSSAQSKNIKIEKKIP-SELFFNADKRII 661
K K L I + L+ ++ +++E +P + L+ A++ +
Sbjct: 439 TAHLKSFARKSRDAAGPVSLREAIEGALELLRGRLRAAGVELELDLPDAPLWVMANEIRL 498
Query: 662 KKILFPILSNSIKFTNN--NGKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPL 719
+++L +L N++ + ++ IR + G V++T+ D G GI AL + +PF
Sbjct: 499 EQVLVNLLQNALDAMAGQEDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLFEPF--- 555
Query: 720 HNQYDQSIG-GFGLGLAISDALTNLHGGRLKIISQEGKGTIVTICMP 765
+ +G G GLGLAIS + GG L++ + G TI +
Sbjct: 556 --FTTKPVGKGLGLGLAISQNIARDLGGSLEVANHPEGGASFTIELR 600
>gnl|CDD|33974 COG4251, COG4251, Bacteriophytochrome (light-regulated signal
transduction histidine kinase) [Signal transduction
mechanisms].
Length = 750
Score = 70.7 bits (173), Expect = 1e-12
Identities = 50/224 (22%), Positives = 100/224 (44%), Gaps = 12/224 (5%)
Query: 537 ETANKTKSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLL 596
E +N F SH+L+ PL I +++++ + L + E+ I +
Sbjct: 518 ERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDE-EAKEFITFISRLTSLMQ 576
Query: 597 NMINNILEMSKIETEKISIDKQNADLIPIINEGIRLIGSSAQSKNIKIEKKIPSELFFNA 656
+I+++L SK+ + + Q D+ ++++ + + +I + +A
Sbjct: 577 QLIDDLLTYSKLGLTEAPL--QPTDVQKVVDKVLLELSQRIADTGAEIRIAPLPVVAADA 634
Query: 657 DKRIIKKILFPILSNSIKF-TNNNGKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQP 715
+ + ++ +++N+IKF N + I + ++ D GIGI + E+I
Sbjct: 635 TQ--LGQVFQNLIANAIKFGGPENPDIEISAERQEDEWTFSVRDNGIGIDPAYFERIFVI 692
Query: 716 FEPLH--NQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKG 757
F+ LH ++Y G GLGLAI + H GR+ + S G+G
Sbjct: 693 FQRLHSRDEY----LGTGLGLAICKKIAERHQGRIWVESTPGEG 732
>gnl|CDD|144196 pfam00512, HisKA, His Kinase A (phosphoacceptor) domain.
dimerization and phosphoacceptor domain of histidine
kinases.
Length = 66
Score = 67.6 bits (166), Expect = 1e-11
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 543 KSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNI 602
KSEFLA +SHELRTPL AI G+ E++ E + EY + I S + LL +IN++
Sbjct: 2 KSEFLANLSHELRTPLTAIRGYLELLLDTELSE----EQREYLETILRSAERLLRLINDL 57
Query: 603 LEMSKIETE 611
L++S+IE
Sbjct: 58 LDLSRIEAG 66
>gnl|CDD|119399 cd00082, HisKA, Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via trans-autophosphorylation
by the catalytic domain of the histidine kinase. They
subsequently transfer the phosphoryl group to the Asp
acceptor residue of a response regulator protein.
Two-component signalling systems, consisting of a
histidine protein kinase that senses a signal input and
a response regulator that mediates the output, are
ancient and evolutionarily conserved signaling
mechanisms in prokaryotes and eukaryotes..
Length = 65
Score = 66.1 bits (162), Expect = 4e-11
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 540 NKTKSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMI 599
+ K EFLA +SHELRTPL AI G E++++E+ L + EY + I + LL +I
Sbjct: 1 LQAKGEFLANVSHELRTPLTAIRGALELLEEEL---LDDEEQREYLERIREEAERLLRLI 57
Query: 600 NNILEMSK 607
N++L++S+
Sbjct: 58 NDLLDLSR 65
>gnl|CDD|34605 COG5000, NtrY, Signal transduction histidine kinase involved in
nitrogen fixation and metabolism regulation [Signal
transduction mechanisms].
Length = 712
Score = 60.7 bits (147), Expect = 1e-09
Identities = 48/236 (20%), Positives = 94/236 (39%), Gaps = 29/236 (12%)
Query: 544 SEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGS--VKYYEYAQDIHYSGQHLLNMIN- 600
+ +++HE++ PL I +E + +++ E+ + I + + M++
Sbjct: 487 GDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDE 546
Query: 601 --NILEMSKIETEKISIDKQNADLIPIINEGIRLIGSSAQSKNIKIEKKIPSE-LFFNAD 657
M + EK DL ++ E L + +I + E L AD
Sbjct: 547 FRAFARMPAPKLEKS-------DLRALLKEVSFLYE--IGNDHIVFAAEFGGEPLIGMAD 597
Query: 658 KRIIKKILFPILSNSIKFTNNNGKMMIRTSKI-------GQCVIITIADTGIGIPKSALE 710
++ ++ +L N+ + RT+ I +++ + D G G P+ E
Sbjct: 598 ATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPR---E 654
Query: 711 KIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKII-SQEGKGTIVTICMP 765
+ EP ++ G GLGLAI + HGGRL++ + + G ++ I P
Sbjct: 655 NRHRALEPYVTTREK---GTGLGLAIVKKIVEEHGGRLELHNAPDFDGAMIRIKFP 707
>gnl|CDD|33642 COG3852, NtrB, Signal transduction histidine kinase, nitrogen
specific [Signal transduction mechanisms].
Length = 363
Score = 53.4 bits (128), Expect = 3e-07
Identities = 50/255 (19%), Positives = 111/255 (43%), Gaps = 36/255 (14%)
Query: 530 QVEKERAETANKTKSEFLAKM-SHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDI 588
++++E+ + A + + L + +HE++ PL I G ++++++ L E Q I
Sbjct: 118 RLDREQTQHAQQRAVKGLVRGLAHEIKNPLGGIRGAAQLLERA----LPDEALRELTQLI 173
Query: 589 HYSGQHLLNMINNILEMSKIETEKISIDKQNADLIPIINEGIRLIGSSAQSKNIKIEKKI 648
L N+++ + + N I + E +R + + + N+++ +
Sbjct: 174 IEEADRLRNLVDRLEVLG--PQRPGDRVPVN---IHEVLERVRALVEAEFADNVRLIRDY 228
Query: 649 -PS--ELFFNADKRIIKKILFPILSNSIKFTNN----NGKMMIRTSKIGQCVI------- 694
PS E+ + D+ + ++ ++ N+ + G++++RT Q I
Sbjct: 229 DPSLPEVLGDRDQ--LIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRL 286
Query: 695 ---ITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKII 751
+ + D G G+P + + P GG GLGLA++ L + HGG+++
Sbjct: 287 ALPLEVIDNGPGVPPDLQDHLFYPM------VSGREGGTGLGLALAQNLIDQHGGKIEFD 340
Query: 752 SQEGKGTIVTICMPQ 766
S G+ T+ + +P
Sbjct: 341 SWPGR-TVFRVLLPI 354
>gnl|CDD|33927 COG4192, COG4192, Signal transduction histidine kinase regulating
phosphoglycerate transport system [Signal transduction
mechanisms].
Length = 673
Score = 52.4 bits (125), Expect = 4e-07
Identities = 58/282 (20%), Positives = 120/282 (42%), Gaps = 23/282 (8%)
Query: 486 LLKHNQAQLRESKRRLKATINDLSTSRQILERQKTELSIANAKYQ-VEKERAETANKTKS 544
LL+ ++ E + L+ +L ++ ERQ+ E + + + ++ + +T
Sbjct: 399 LLRLLLQRVNEKTQSLRERNQELQ--AEVEERQEAEAHLKKTQGELIQAAKLAVVGQT-- 454
Query: 545 EFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILE 604
+ ++HE+ PLNA+ + + + E S + I ++L + I+
Sbjct: 455 --MTSLAHEINQPLNAMSAYLFSARLAL-EEAPSAQAATSLDKI----ENLTERMGKIVN 507
Query: 605 MSKIETEKISIDK--QNADLIPIINEGIRLIGSSAQSKNIKIEKKIPSELFFNADKRIIK 662
+ K S D+ Q L ++ + L+ + + + IK+ +L D I+
Sbjct: 508 SLRQFARKNSSDESLQPVRLNSVVEQAWELLQTKHKRRQIKLINPT-DDLMVMGDAVSIE 566
Query: 663 KILFPILSNSIKFTNNNGKM--MIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPLH 720
++L ++ N++ + + +I + + I I D G G P ++K+ PF
Sbjct: 567 QVLVNLIVNALDASTHFAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDKLLTPFTT-- 624
Query: 721 NQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIVTI 762
+ +G GLGL+IS +L GRL + S K +V +
Sbjct: 625 ---SKEVG-LGLGLSISQSLMEQMQGRLALASTLTKNAMVIL 662
>gnl|CDD|35739 KOG0519, KOG0519, KOG0519, Sensory transduction histidine kinase
[Signal transduction mechanisms].
Length = 786
Score = 50.8 bits (121), Expect = 1e-06
Identities = 60/320 (18%), Positives = 117/320 (36%), Gaps = 62/320 (19%)
Query: 497 SKRRLKATINDLSTSRQILERQKTELSIANAKYQVEKERAETANKTKSEFLAKMSHELRT 556
S R+ + R + + ++ + ++ + A + ++ FLA +SHE+RT
Sbjct: 179 SIVRMLTHEIRAALDRHTILK----TTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRT 234
Query: 557 PLNA-ILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEMSKIETEKISI 615
PLN +LG S + LL+++N+IL++SK+E+ K +
Sbjct: 235 PLNGGMLGGLSDTDL-------DSDQRLILNTDRVSAKSLLSLLNDILDLSKVESGKGEL 287
Query: 616 DKQNADLIPIINEGIRLIGSSAQSKNIKIEKKIPSELFFNA--DKRIIKKILFPILSNSI 673
+ DL ++N I L+ +Q+K + + S + N D+ +++++ ++SN+I
Sbjct: 288 VAKRFDLRTLLNFVISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAI 347
Query: 674 KFTNNN------------------------------------------GKMMIRTSKIGQ 691
KFT+ R + I
Sbjct: 348 KFTHAGHLEESVIAREELSESNDVLLRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISL 407
Query: 692 CVII-----TIADTGIGIPKSA-LEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHG 745
++ D+G+ I + + GG GLG +I +L L
Sbjct: 408 LSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMS 467
Query: 746 GRLKIISQEGKGTIVTICMP 765
G + IS G + +
Sbjct: 468 GEISDISCISLGKTFSFTLD 487
>gnl|CDD|33099 COG3290, CitA, Signal transduction histidine kinase regulating
citrate/malate metabolism [Signal transduction
mechanisms].
Length = 537
Score = 44.8 bits (106), Expect = 9e-05
Identities = 80/395 (20%), Positives = 137/395 (34%), Gaps = 90/395 (22%)
Query: 382 QRLSKAIECTSEALVLWDKNDRLVMCNANYQKAYGLP---DHVLVPGNARSIIQDAQTRP 438
+ ++ E ++ DK + + N QK GL + + D+
Sbjct: 215 EERQAMLQSIKEGVIAVDKKGVITLINQAAQKLLGLRQPSGDPIGRSIVEVLPPDSDLPE 274
Query: 439 IIEYRTSDPERSQDMSKEIKLADSRWLQINEWCTHDGGTISVGTDITLLKHNQAQLRESK 498
++E + ++ R L N GG I VG IT
Sbjct: 275 VLETGKPQHDEEIRING-------RLLVANRVPIRSGGQI-VGAIITF------------ 314
Query: 499 RRLKATINDLSTSRQILERQKTELSIANAKYQVEKERAETANKTKSEFLAKMSHELRTPL 558
R K I L+ T + +E L SHE L
Sbjct: 315 -RDKTEIKKLT-------------------------EQLTGVRQYAEALRAQSHEFMNKL 348
Query: 559 NAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEMSKIETEKISIDKQ 618
+ ILG L + Y+ A D I E + + +S +
Sbjct: 349 HTILG------------LLQLGEYDDALD----------YIQQESEEQQELIDSLSEKIK 386
Query: 619 NADLIPIINEGIRLIG--SSAQSKNIKIEKKIPSELFFNADKRIIKK---ILFPILSNSI 673
+ L L+G S A+ + + S+L + IL ++ N++
Sbjct: 387 DPVLAGF------LLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNAL 440
Query: 674 KFT---NNNGKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGF 730
+ N ++ + S G ++I +ADTG GIP +KI FE + ++ GG
Sbjct: 441 EALLAPEENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKI---FEKGVST--KNTGGR 495
Query: 731 GLGLAISDALTNLHGGRLKIISQEGKGTIVTICMP 765
G+GL + L GG +++ S++G+GT +I +P
Sbjct: 496 GIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIP 530
>gnl|CDD|36006 KOG0787, KOG0787, KOG0787, Dehydrogenase kinase [Signal
transduction mechanisms].
Length = 414
Score = 39.2 bits (91), Expect = 0.005
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 23/129 (17%)
Query: 648 IPSELFFNADKRIIKKILFPILSNSIKFT--------NNNGKMMIRTSKIGQCVIITIAD 699
+PS L++ +LF + N+++ T + + + +K + ++I I+D
Sbjct: 257 VPSHLYY---------MLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISD 307
Query: 700 TGIGIPKSALEKI------GQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQ 753
G G+P ++++ P N + GFG GL IS GG LK+ S
Sbjct: 308 RGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGFGLPISRLYARYFGGDLKLQSL 367
Query: 754 EGKGTIVTI 762
EG GT V I
Sbjct: 368 EGIGTDVYI 376
>gnl|CDD|36180 KOG0962, KOG0962, KOG0962, DNA repair protein RAD50, ABC-type
ATPase/SMC superfamily [Replication, recombination and
repair].
Length = 1294
Score = 38.0 bits (88), Expect = 0.010
Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 9/131 (6%)
Query: 451 QDMSKEIKLADSRWLQINEWCTHDGGTISVGTDITL-----LKHNQAQ----LRESKRRL 501
+ + K++KL DS + + + I D T L N + + E R L
Sbjct: 264 EKLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLREL 323
Query: 502 KATINDLSTSRQILERQKTELSIANAKYQVEKERAETANKTKSEFLAKMSHELRTPLNAI 561
+ I+DL+ R L + KTEL + ++ Q E E + + + + +++H+ +
Sbjct: 324 EREISDLNEERSSLIQLKTELDLEQSELQAEAEFHQELKRQRDSLIQELAHQYQLDSVES 383
Query: 562 LGFSEVIKKEI 572
L F +KK+
Sbjct: 384 LEFMAEVKKDF 394
>gnl|CDD|36213 KOG0995, KOG0995, KOG0995, Centromere-associated protein HEC1 [Cell
cycle control, cell division, chromosome partitioning].
Length = 581
Score = 37.6 bits (87), Expect = 0.013
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 10/136 (7%)
Query: 494 LRESKRRLKATINDLSTSRQILERQKTELSIANAKYQVEKERAE---TANKTKSEFLAKM 550
L+E +TI + QIL + EL A +KY+++KE AE + + E L +
Sbjct: 444 LQEHFSNKASTIEEK---IQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEE 500
Query: 551 SHELRTPLNAILGFSEVIKKEIFGELGSVKY--YEYAQDIHYSGQHLLNMINNIL--EMS 606
L+ LN + +E + K I EL + E Q I +++ I++ S
Sbjct: 501 LLNLKLVLNTSMKEAEELVKSIELELDRMVATGEEERQKIAKQLFAVIDQISDFKVSIQS 560
Query: 607 KIETEKISIDKQNADL 622
+E K + K+ ++
Sbjct: 561 SLENLKADLHKECEEI 576
>gnl|CDD|33706 COG3920, COG3920, Signal transduction histidine kinase [Signal
transduction mechanisms].
Length = 221
Score = 36.4 bits (84), Expect = 0.032
Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 24/174 (13%)
Query: 598 MINNILEMSKIETEKISIDKQNADLIPIINEGIRLIGSSAQSKNIKIEKKIPSELFFNAD 657
N I ++ I D + + S K+I++ +F + D
Sbjct: 59 SQNRIQSLALIHELLYKSGDDTWDFASYLELLASNLFPSYGGKDIRLILDSGPNVFLDPD 118
Query: 658 KRI-IKKILFPILSNSIKF---TNNNGKMMI--RTSKIGQCVIITIADTGIGIPKSALEK 711
+ + I+ +++N++K + G++ I G ++T+ D G G P A
Sbjct: 119 TAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVEA--- 175
Query: 712 IGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIVTICMP 765
S GGFGL L + + GG L+ + GT + P
Sbjct: 176 ------------PLSRGGFGLQL-VERLVPEQLGGELEDERPD--GTEFRLRFP 214
>gnl|CDD|32791 COG2972, COG2972, Predicted signal transduction protein with a
C-terminal ATPase domain [Signal transduction
mechanisms].
Length = 456
Score = 35.5 bits (81), Expect = 0.057
Identities = 59/299 (19%), Positives = 100/299 (33%), Gaps = 47/299 (15%)
Query: 478 ISVGTDITLLKHNQAQLRESKRRLKATINDLSTSRQILERQKTELSIANAKYQVEKERAE 537
+ + + + L + + + E+ E E
Sbjct: 191 VILLLSSFSSRSILLPILGLILLLSRIALGYLSELKEISETINEMEERLEYLIEENYSLE 250
Query: 538 TANKTKSEFLAKMS----HELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQ 593
+ ++E A S H L L I +E E E A+ + +
Sbjct: 251 QE-QLEAELRALQSQINPHFLYNTLETIRMLAEEDDPE-----------EAAKVVKALSK 298
Query: 594 HLLNMINNILEMSKIETEKISIDKQNADLIPIINEGIRLIGSSAQSKNIKIEKKIPSELF 653
L ++N+ + +E E + I+K + I I +++ I EL
Sbjct: 299 LLRYSLSNLDNIVTLEIELLLIEK----YLEIQKLRI--------GDRLEVPLPIDEEL- 345
Query: 654 FNADKRIIKKILFPILSNSIK--FTNNNGKMMIRTSKIGQ--CVIITIADTGIGIPKSAL 709
K +L P++ N+I+ I S Q + I+I+D G GI + L
Sbjct: 346 --EPLIDPKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGIDEEKL 403
Query: 710 EKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGG--RLKIISQEGKGTIVTICMPQ 766
E + E G+GL+ L+ G L I SQ GKGT V I +P+
Sbjct: 404 EGLSTKGE----------NRSGIGLSNVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPK 452
>gnl|CDD|30099 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
II mediates cortical contraction in cell motility, and
is the motor in smooth and skeletal muscle. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle..
Length = 693
Score = 33.2 bits (76), Expect = 0.30
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 231 FILFSYYRQAKKNKENDTILLEANICVETALSRGRCGLWNFNFDNKKFHLSRSMYEIMGI 290
+ +F + +LL N LS+G + + D ++F L+ ++I+G
Sbjct: 202 YHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGELTIPGVD-DAEEFKLTDEAFDILGF 260
Query: 291 PYENKTLSFRAIARLIHYDNKKICEIARS 319
E K F+ +A ++H N K + R
Sbjct: 261 SDEEKNSIFKIVAAILHLGNIKFKQRQRE 289
>gnl|CDD|30988 COG0643, CheA, Chemotaxis protein histidine kinase and related
kinases [Cell motility and secretion / Signal
transduction mechanisms].
Length = 716
Score = 32.6 bits (74), Expect = 0.39
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 23/109 (21%)
Query: 680 GKMMIRTSKIGQCVIITIADTGIGIPKS-----ALEK-IGQP---------------FEP 718
G + + G ++I ++D G GI + A+E+ + F P
Sbjct: 464 GTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDEEILNLIFAP 523
Query: 719 LHNQYDQ--SIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIVTICMP 765
+ +Q + G G+G+ + GG + + S+ GKGT TI +P
Sbjct: 524 GFSTAEQVTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLP 572
>gnl|CDD|33086 COG3275, LytS, Putative regulator of cell autolysis [Signal
transduction mechanisms].
Length = 557
Score = 31.8 bits (72), Expect = 0.82
Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 48/198 (24%)
Query: 595 LLNMINNILEMSKIETEKIS-------------IDKQNADLIPI------INEGIRLIGS 635
L N +N I + + +K ++ +++ + +N + + +
Sbjct: 376 LFNALNTISAVIRRNPDKARELILYLSTYFRYNLENNTQEIVTLSKELEHVNAYLSIEKA 435
Query: 636 SAQSKNIKIEKKIPSELFFNADKRIIKKILFPILSNSIK--FTN--NNGKMMIRTSKIGQ 691
+ + + I EL +I IL P++ N+IK + + G++ I K
Sbjct: 436 RFGDR-LDVVIDIDEELR---QVQIPSFILQPLVENAIKHGISQLKDTGRVTISVEKEDA 491
Query: 692 CVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGR---L 748
+ I + D G I G G+GLA L G L
Sbjct: 492 DLRIEVEDNGGLIQPD------------------EEDGTGIGLANVHKRLKLLYGDDEGL 533
Query: 749 KIISQEGKGTIVTICMPQ 766
I S E GT + +P
Sbjct: 534 HIESLEQAGTRIIFRLPL 551
>gnl|CDD|39860 KOG4661, KOG4661, KOG4661, Hsp27-ERE-TATA-binding protein/Scaffold
attachment factor (SAF-B) [Transcription].
Length = 940
Score = 31.7 bits (71), Expect = 0.86
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 495 RESKRRLKATINDLSTSRQILERQKTELS-IANAKYQVEKERAETANKTKSE 545
RE RLKA L RQ LER++ E + + +VE+ER + + E
Sbjct: 645 REELERLKAERLRLERQRQRLERERMERERLERERMKVEEERRDEQERIHRE 696
>gnl|CDD|34223 COG4585, COG4585, Signal transduction histidine kinase [Signal
transduction mechanisms].
Length = 365
Score = 30.9 bits (69), Expect = 1.2
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 20/97 (20%)
Query: 669 LSNSIKFTNNNGKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIG 728
L+N+I+ ++ + + + + + D G+G D+ G
Sbjct: 288 LTNAIRHAQAT-EVRVTLERTDDELRLEVIDNGVGFDP-----------------DKEGG 329
Query: 729 GFGLGLAISDALTNLHGGRLKIISQEGKGTIVTICMP 765
GFGL L + + + GG L I S G+GT VTI +P
Sbjct: 330 GFGL-LGMRERV-EALGGTLTIDSAPGQGTTVTITLP 364
>gnl|CDD|35383 KOG0161, KOG0161, KOG0161, Myosin class II heavy chain
[Cytoskeleton].
Length = 1930
Score = 31.0 bits (70), Expect = 1.3
Identities = 20/105 (19%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 448 ERSQDMSKEIKLADSRWLQINEWCTHDGGTIS-VGTDITLLKHNQAQLRESKRRLKATIN 506
E++ ++ ++ + + ++ E T+ + + ++ L E L I+
Sbjct: 922 EKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENIS 981
Query: 507 DLSTSRQILERQKTELSIANAKYQVEKERAETANKTKSEFLAKMS 551
LS ++ LE + EL Q E+E+A++ NK K++ ++
Sbjct: 982 KLSKEKKELEERIRELQ---DDLQAEEEKAKSLNKAKAKLEQQLD 1023
Score = 30.6 bits (69), Expect = 1.7
Identities = 13/53 (24%), Positives = 21/53 (39%)
Query: 487 LKHNQAQLRESKRRLKATINDLSTSRQILERQKTELSIANAKYQVEKERAETA 539
L +LR + L I DL + ++ EL + + EKE + A
Sbjct: 1482 LLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAA 1534
>gnl|CDD|36560 KOG1346, KOG1346, KOG1346, Programmed cell death 8
(apoptosis-inducing factor) [Signal transduction
mechanisms].
Length = 659
Score = 30.1 bits (67), Expect = 2.3
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 488 KHNQAQLRESKRRLKATINDLSTSRQILERQKTELSIANAKYQVEKERAETANKTKSEFL 547
K +A+ E K RL A + S + L + L I RA +N ++ L
Sbjct: 148 KKAEAEEEERKARLVAGLATSPPSSEDLPKHVPYLIIGGGTAAFAAFRAIKSNDATAKVL 207
Query: 548 AKMSHELRTPLN 559
+S E P
Sbjct: 208 -MISEEPELPYM 218
>gnl|CDD|33640 COG3850, NarQ, Signal transduction histidine kinase,
nitrate/nitrite-specific [Signal transduction
mechanisms].
Length = 574
Score = 29.5 bits (66), Expect = 3.4
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 21/126 (16%)
Query: 642 IKIEKKIPSELFFNADKRI-IKKILFPILSNSIKFTNNNGKMMIRTSKIGQCVIITIADT 700
+ ++ ++P A +++ + +I+ LSN+IK + + + GQ V +T+ D
Sbjct: 463 VTLDYQLPPRAL-PAHQQVHLLQIVREALSNAIKHAQASEIKVTVSQNDGQ-VTLTVEDN 520
Query: 701 GIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIV 760
G+GI ++A E G GL I GG+L+I +EG GT V
Sbjct: 521 GVGIDEAA-EPSGH-----------------YGLNIMRERAQRLGGQLRIRRREGGGTEV 562
Query: 761 TICMPQ 766
++ P
Sbjct: 563 SLTFPP 568
>gnl|CDD|36387 KOG1172, KOG1172, KOG1172, Na+-independent Cl/HCO3 exchanger AE1
and related transporters (SLC4 family) [Inorganic ion
transport and metabolism].
Length = 876
Score = 29.1 bits (65), Expect = 4.5
Identities = 49/218 (22%), Positives = 85/218 (38%), Gaps = 29/218 (13%)
Query: 41 LFSF-------FSSFNQTIPMISMVFLVFIA---TSSIIKVTTRYAQQEKMTNQTSLMLT 90
LF F + +F + + + L+ +A SS++K TR+ ++ + + +
Sbjct: 432 LFKFCKDNGLDYLAFRAWVGLWTAFLLILLAATNASSLVKYITRFTEEIFGLLISLIFIY 491
Query: 91 EAIE---IIFQNNNIKFDL-------ASQKKAESMLGQLLAKTRFLSESFILLAQPNELV 140
EAI+ IF+ I+FD S + ES+ G LL + + + L +
Sbjct: 492 EAIKKLIKIFKGLPIEFDSKPNPGADWSGPECESVSGTLLGSSCRPDTALLSLILMFGTL 551
Query: 141 FASST----KNSHYIGKKIGEIIPELSRSRSRSKTVQMSEASLDQQPYHVLSVNLPHNSG 196
F + T K+S Y +K+ +I + S + S +D V + LP S
Sbjct: 552 FLALTLRKFKSSRYFPRKVRSLISDFGVPLS---ILVFS--LIDYFGGSVETPKLPVPSV 606
Query: 197 SILIINSRVPLLRLWREEVTLEVVFFSIISALLLFILF 234
+ VF ++I ALLL IL
Sbjct: 607 FPPTWPFDRGWFVPPFGKNPWWYVFAALIPALLLTILI 644
>gnl|CDD|177131 MTH00059, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 289
Score = 29.1 bits (66), Expect = 5.1
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 8/41 (19%)
Query: 197 SILIINSRVPLLRLWREEVTLEVVFFSIISALLLFILFSYY 237
SI II S + +L +W V +S LF L Y
Sbjct: 247 SIGIIYSSIYVLLVW--------VIYSFSEQFYLFKLLVSY 279
>gnl|CDD|39608 KOG4407, KOG4407, KOG4407, Predicted Rho GTPase-activating protein
[General function prediction only].
Length = 1973
Score = 29.0 bits (64), Expect = 5.3
Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 3/106 (2%)
Query: 91 EAIEIIFQNNNIKFDLASQKKAESMLGQLLAKTRFLSESFILLAQPNELVFASSTKNSHY 150
+ ++ + + N+ + S+ K ES + T + QP ++S+ S +
Sbjct: 1423 QKVKSMLRRNSRRDKSKSKLKIESTSPAAVNTTTIAKRGW---TQPTPSTTSASSVESAF 1479
Query: 151 IGKKIGEIIPELSRSRSRSKTVQMSEASLDQQPYHVLSVNLPHNSG 196
G II SR S++SL + + H S
Sbjct: 1480 CGNYQERIIDAEIESRQTVSPQMTSKSSLGASSTRLDQGSPSHESS 1525
>gnl|CDD|73329 cd02765, MopB_4, The MopB_4 CD includes a group of related
uncharacterized bacterial and archaeal
molybdopterin-binding oxidoreductase-like domains with a
putative N-terminal iron-sulfur [4Fe-4S] cluster binding
site and molybdopterin cofactor binding site. These
members belong to the molybdopterin_binding (MopB)
superfamily of proteins.
Length = 567
Score = 28.8 bits (64), Expect = 5.4
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 337 ASGADIWIQVRAQMMRTISGGMNIIGIAMDLTEKYHLEKRYA------EADQRL----SK 386
A+ AD W+ +R ++ GM + + ++ L+ + E + L
Sbjct: 202 AAKADQWVPIRPGTDPALALGMINYILEHNWYDEAFLKSNTSAPFLVREDNGTLLRQADV 261
Query: 387 AIECTSEALVLWDKNDR 403
+ V+WD N
Sbjct: 262 TATPAEDGYVVWDTNSD 278
>gnl|CDD|99919 cd05536, POLBc_B3, DNA polymerase type-B B3 subfamily catalytic
domain. Archaeal proteins that are involved in DNA
replication are similar to those from eukaryotes. Some
members of the archaea also possess multiple family B
DNA polymerases (B1, B2 and B3). So far there is no
specific function(s) has been assigned for different
members of the archaea type B DNA polymerases.
Phylogenetic analyses of eubacterial, archaeal, and
eukaryotic family B DNA polymerases are support
independent gene duplications during the evolution of
archaeal and eukaryotic family B DNA polymerases.
Structural comparison of the thermostable DNA polymerase
type B to its mesostable homolog suggests several
adaptations to high temperature such as shorter loops,
disulfide bridges, and increasing electrostatic
interaction at subdomain interfaces..
Length = 371
Score = 28.8 bits (65), Expect = 5.8
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 485 TLLKHNQAQLRESKRRLKATINDLSTSRQILERQKTELSIANAKY 529
++L+ + R K ++K + + + ERQ+ +AN+ Y
Sbjct: 71 SVLEDLLEERRRIKEKMKKLDPESEEYKLLDERQRAIKILANSFY 115
>gnl|CDD|143406 cd07087, ALDH_F3-13-14_CALDH-like, ALDH subfamily: Coniferyl
aldehyde dehydrogenase, ALDH families 3, 13, and 14, and
other related proteins. ALDH subfamily which includes
NAD(P)+-dependent, aldehyde dehydrogenase, family 3
member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and
fatty aldehyde dehydrogenase, family 3 member A2
(ALDH3A2, EC=1.2.1.3), and also plant ALDH family
members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14
(YMR110C) and the protozoan family 13 member (ALDH13),
as well as coniferyl aldehyde dehydrogenases (CALDH,
EC=1.2.1.68), and other similar sequences, such as the
Pseudomonas putida benzaldehyde dehydrogenase I that is
involved in the metabolism of mandelate.
Length = 426
Score = 28.6 bits (65), Expect = 6.1
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 418 PDHVLVPGNARSIIQDAQTRPIIEYRTSDPERSQDMSK 455
PD+VLV + + + + + I E+ DP+ S D +
Sbjct: 243 PDYVLVHESIKDELIEELKKAIKEFYGEDPKESPDYGR 280
>gnl|CDD|39983 KOG4786, KOG4786, KOG4786, Ubinuclein, nuclear protein interacting
with cellular and viral transcription factors
[Transcription, Signal transduction mechanisms].
Length = 1136
Score = 28.3 bits (62), Expect = 8.5
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 163 SRSRSRSKTVQMSEASLDQQPYHVLSVNLPHNSGS 197
S + S +VQ ++ L QQ Y S HN+ S
Sbjct: 1008 RSSFTMSHSVQQHQSPLQQQFYQSPS---HHNNSS 1039
>gnl|CDD|33641 COG3851, UhpB, Signal transduction histidine kinase,
glucose-6-phosphate specific [Signal transduction
mechanisms].
Length = 497
Score = 28.3 bits (63), Expect = 8.5
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 21/77 (27%)
Query: 690 GQCVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLK 749
+ +++ I D G G+P + GFGL + + ++ L GG L
Sbjct: 439 DERLMLEIEDDGSGLPP-----------------GSGVQGFGLT-GMRERVSAL-GGTLT 479
Query: 750 IISQEGKGTIVTICMPQ 766
+ SQ GT V + +PQ
Sbjct: 480 LSSQH--GTRVIVNLPQ 494
>gnl|CDD|34791 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 28.2 bits (62), Expect = 8.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 519 KTELSIANAKYQVEKERAETANKTKSEFLAKMSHE 553
K + K Q EKER E+ + K E + K E
Sbjct: 1018 KDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKE 1052
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.133 0.374
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 8,653,343
Number of extensions: 460548
Number of successful extensions: 1434
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1405
Number of HSP's successfully gapped: 68
Length of query: 766
Length of database: 6,263,737
Length adjustment: 101
Effective length of query: 665
Effective length of database: 4,081,228
Effective search space: 2714016620
Effective search space used: 2714016620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.6 bits)