HHsearch alignment for GI: 254780904 and conserved domain: COG0566
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=8.4e-33 Score=226.19 Aligned_cols=152 Identities=19% Similarity=0.207 Sum_probs=126.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEE
Q ss_conf 48968999428885479999999997199804980888899999999985310134442001377899841255310120
Q gi|254780904|r 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATT 91 (268)
Q Consensus 12 ~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~ 91 (268)
T Consensus 107 ~~~~~lvLd~V~DP~NlGaIiRtA~a~Gv~~Vi~~~~~~~~~~~~v~r~s~Ga~~~vp~~~~~n~~~~~~~~~~------ 180 (260)
T COG0566 107 AQPLLLVLDGVTDPHNLGAIIRTADAFGVDGVILPKRRADPLNPKVIRASAGAAFHVPVIRVTNLARTLLELLK------ 180 (260)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHHEEECCCCCCCCCEEEEECCHHHHHHHHH------
T ss_conf 58869999178788712488875987389889988986677453432541771005735888077999999999------
Q ss_pred CCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 11223430341242035666553115881699994588842431000123222047678734101688999999999996
Q gi|254780904|r 92 ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171 (268)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r~ 171 (268)
T Consensus 181 ---~~G~~v~~t~~~~-~~~~~~~~~~~~~aLvlG~Eg~Gls~~~~~~~D~~v~IPm~G~v~SLNVsvAagI~Lye~~rq 256 (260)
T COG0566 181 ---EAGFWVVATSLDG-EVDLYETDLPKKTALVLGNEGEGLSRLLLEHADQLVRIPMAGKVESLNVSVAAGILLYEARRQ 256 (260)
T ss_pred ---HCCCEEEEECCCC-CCCHHHCCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf ---7694899985888-743110267787799987898885899995178479935899865108999999999999986
Q ss_pred HC
Q ss_conf 21
Q gi|254780904|r 172 SI 173 (268)
Q Consensus 172 ~~ 173 (268)
T Consensus 257 ~~ 258 (260)
T COG0566 257 RR 258 (260)
T ss_pred HC
T ss_conf 44