HHsearch alignment for GI: 254780904 and conserved domain: TIGR00050
>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1; InterPro: IPR004384 These proteins are part of the trmH (spoU) family of rRNA methylases. The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases . TrmH is a tRNA (guanosine-2'-O-)-methyltransferase (2.1.1.34 from EC), which specifically methylates guanosine-18 in various tRNAs using S-adenosyl-L-methionine.; GO: 0008173 RNA methyltransferase activity.
Probab=100.00 E-value=0 Score=436.57 Aligned_cols=237 Identities=34% Similarity=0.492 Sum_probs=215.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHH--CCCCCEEE
Q ss_conf 8968999428885479999999997199804980888899999999985310134442001377899841--25531012
Q gi|254780904|r 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA--DLHFIYAT 90 (268)
Q Consensus 13 ~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~--~~~~~~~~ 90 (268)
T Consensus 3 ~~I~ivLVep~~~gNvG~~ARaMKnmGl~~L~Lv~p~~~~~~~eay~~A~~A~Di~~nA~vv~~L~Eal~sld~~~~vgT 82 (253)
T TIGR00050 3 ENISIVLVEPKHSGNVGSIARAMKNMGLEELILVNPRVDILEEEAYALAAHAKDILENAKVVDDLDEALDSLDCDLVVGT 82 (253)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCHHHHHHHCCCCEEEEC
T ss_conf 12478886179986446999998762700125646622556878999872027865875474267999873199707862
Q ss_pred E-CC---CCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 0-11---2234303412420356665531158816999945888424310001232220476787341016889999999
Q gi|254780904|r 91 T-AR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166 (268)
Q Consensus 91 ~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlY 166 (268)
T Consensus 83 sGaRGGd~r~l~~~~~~P~el~~~~~~~~g~~-~~A~vFGREd~GL~NEEL~~Ch~~v~iP~~~~YPslNL~~AV~Vi~Y 161 (253)
T TIGR00050 83 SGARGGDSRNLQRPLLTPRELADKILAKKGWM-KVAIVFGREDSGLTNEELEKCHVLVSIPTSEEYPSLNLSHAVAVILY 161 (253)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCCHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 67888754344677778366687642420672-14788524688876688964781552257788741148999999999
Q ss_pred HHHHHHCCCCCC-------CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC-CHHHHHH
Q ss_conf 999962136654-------44333334688889999999999998728998754389999999998631699-9899999
Q gi|254780904|r 167 ECMENSIVSSEK-------NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL-MREEVFL 238 (268)
Q Consensus 167 El~r~~~~~~~~-------~~~~~~~~a~~~~l~~~~~~l~~~l~~~~f~~~~~~~~~~~~~lrrl~~R~~l-~~~E~~~ 238 (268)
T Consensus 162 eL~~~~~~~~~~nqvPg~~~~~~~~~~A~~~~l~~~~~~~~~~L~~~~~i~e-h~~~~~~~~frrl~~RA~~~~~~e~~~ 240 (253)
T TIGR00050 162 ELRMAKLVQEENNQVPGDRLEDSEMEEATKDDLELLLEHLEEILLSLEVIPE-HKKRLVMRKFRRLYQRAGLLEKEEVAL 240 (253)
T ss_pred HHHHHHHHHHCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998898741146788742001003576888999999999999998433688-863044587777667530104889999
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 9999999998410
Q gi|254780904|r 239 LRGIVSTLDKFSR 251 (268)
Q Consensus 239 L~Gil~~l~~~~~ 251 (268)
T Consensus 241 L~g~L~~i~~~~~ 253 (253)
T TIGR00050 241 LRGILRKIEKRIK 253 (253)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999987409