HHsearch alignment for GI: 254780904 and conserved domain: TIGR00050

>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1; InterPro: IPR004384 These proteins are part of the trmH (spoU) family of rRNA methylases. The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases . TrmH is a tRNA (guanosine-2'-O-)-methyltransferase (2.1.1.34 from EC), which specifically methylates guanosine-18 in various tRNAs using S-adenosyl-L-methionine.; GO: 0008173 RNA methyltransferase activity.
Probab=100.00  E-value=0  Score=436.57  Aligned_cols=237  Identities=34%  Similarity=0.492  Sum_probs=215.2

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHH--CCCCCEEE
Q ss_conf             8968999428885479999999997199804980888899999999985310134442001377899841--25531012
Q gi|254780904|r   13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA--DLHFIYAT   90 (268)
Q Consensus        13 ~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~--~~~~~~~~   90 (268)
T Consensus         3 ~~I~ivLVep~~~gNvG~~ARaMKnmGl~~L~Lv~p~~~~~~~eay~~A~~A~Di~~nA~vv~~L~Eal~sld~~~~vgT   82 (253)
T TIGR00050         3 ENISIVLVEPKHSGNVGSIARAMKNMGLEELILVNPRVDILEEEAYALAAHAKDILENAKVVDDLDEALDSLDCDLVVGT   82 (253)
T ss_pred             CEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCHHHHHHHCCCCEEEEC
T ss_conf             12478886179986446999998762700125646622556878999872027865875474267999873199707862


Q ss_pred             E-CC---CCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf             0-11---2234303412420356665531158816999945888424310001232220476787341016889999999
Q gi|254780904|r   91 T-AR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW  166 (268)
Q Consensus        91 ~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlY  166 (268)
T Consensus        83 sGaRGGd~r~l~~~~~~P~el~~~~~~~~g~~-~~A~vFGREd~GL~NEEL~~Ch~~v~iP~~~~YPslNL~~AV~Vi~Y  161 (253)
T TIGR00050        83 SGARGGDSRNLQRPLLTPRELADKILAKKGWM-KVAIVFGREDSGLTNEELEKCHVLVSIPTSEEYPSLNLSHAVAVILY  161 (253)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCCHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf             67888754344677778366687642420672-14788524688876688964781552257788741148999999999


Q ss_pred             HHHHHHCCCCCC-------CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC-CHHHHHH
Q ss_conf             999962136654-------44333334688889999999999998728998754389999999998631699-9899999
Q gi|254780904|r  167 ECMENSIVSSEK-------NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL-MREEVFL  238 (268)
Q Consensus       167 El~r~~~~~~~~-------~~~~~~~~a~~~~l~~~~~~l~~~l~~~~f~~~~~~~~~~~~~lrrl~~R~~l-~~~E~~~  238 (268)
T Consensus       162 eL~~~~~~~~~~nqvPg~~~~~~~~~~A~~~~l~~~~~~~~~~L~~~~~i~e-h~~~~~~~~frrl~~RA~~~~~~e~~~  240 (253)
T TIGR00050       162 ELRMAKLVQEENNQVPGDRLEDSEMEEATKDDLELLLEHLEEILLSLEVIPE-HKKRLVMRKFRRLYQRAGLLEKEEVAL  240 (253)
T ss_pred             HHHHHHHHHHCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9998898741146788742001003576888999999999999998433688-863044587777667530104889999


Q ss_pred             HHHHHHHHHHHHC
Q ss_conf             9999999998410
Q gi|254780904|r  239 LRGIVSTLDKFSR  251 (268)
Q Consensus       239 L~Gil~~l~~~~~  251 (268)
T Consensus       241 L~g~L~~i~~~~~  253 (253)
T TIGR00050       241 LRGILRKIEKRIK  253 (253)
T ss_pred             HHHHHHHHHHHCC
T ss_conf             9999999987409