HHsearch alignment for GI: 254780904 and conserved domain: TIGR00185
>TIGR00185 rRNA_methyl_2 RNA methyltransferase, TrmH family, group 2; InterPro: IPR004440 The RNA methyltransferase, TrmH family, group 2 are part of the trmH (spoU) family of rRNA methylases that are involved in tRNA and rRNA base modification.; GO: 0008173 RNA methyltransferase activity, 0009451 RNA modification.
Probab=99.93 E-value=2.7e-26 Score=185.20 Aligned_cols=154 Identities=17% Similarity=0.187 Sum_probs=122.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEECCC
Q ss_conf 68999428885479999999997199804980888899999999985310134442001377899841255310120112
Q gi|254780904|r 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94 (268)
Q Consensus 15 ~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 94 (268)
T Consensus 2 ~~iVLy~PeIP~NTGNI~R~Caat~~-~LHLi~PlGF~~~DK~L~RAGLdyw~fv~~~~H~s~E~fle~~~~~~~----- 75 (161)
T TIGR00185 2 LNIVLYEPEIPPNTGNIVRTCAATGT-RLHLIKPLGFELDDKRLKRAGLDYWEFVQLFYHKSWEEFLEAEKPQKG----- 75 (161)
T ss_pred EEEEEECCCCCCCCCHHHHHHHCCCC-EEEEECCCCCCCCCCEEEECCCCCCCCEEEEECCCHHHHHHHCCCCCE-----
T ss_conf 15774078897884112010111586-245660578620781423147874452323562556888863389971-----
Q ss_pred CCCCEEEECCC-CHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCC--CCEEECCCCC-CCCCHHHHHHHHHHHHHHHH
Q ss_conf 23430341242-03566655311588169999458884243100012--3222047678-73410168899999999999
Q gi|254780904|r 95 RNNFKSVLAPK-EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS--NAIISFPVNP-LFPSLNISQAVLLMVWECME 170 (268)
Q Consensus 95 ~~~~~~~~~~~-~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~c--d~~v~IPt~~-~~~SLNLS~AvaIvlYEl~r 170 (268)
T Consensus 76 --nlf~lT~~G~~t~~~~~~~~~~~d~~yl~fG~ET~GLP~~~~~~~P~~~~~RiPm~~s~vRSlNLsn~va~~lYEa~r 153 (161)
T TIGR00185 76 --NLFLLTKKGDKTPDHISVTYQDGDELYLVFGQETKGLPKSLLDNLPMEQKIRIPMTNSEVRSLNLSNSVAIVLYEALR 153 (161)
T ss_pred --EEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf --688884038877450466543786169983687755128998606321630325578884622468899999998787
Q ss_pred HHCCCC
Q ss_conf 621366
Q gi|254780904|r 171 NSIVSS 176 (268)
Q Consensus 171 ~~~~~~ 176 (268)
T Consensus 154 Q~~Y~~ 159 (161)
T TIGR00185 154 QLGYLG 159 (161)
T ss_pred HCCCCC
T ss_conf 513578