HHsearch alignment of GI: 254780904 and MMDB domain: 1zjr_A_24-180

>1zjr_A (A:24-180) TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}
Probab=99.97  E-value=7.7e-32  Score=219.72  Aligned_cols=152  Identities=13%  Similarity=0.103  Sum_probs=119.5

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEECC
Q ss_conf             96899942888547999999999719980498088889999999998531013444200137789984125531012011
Q gi|254780904|r   14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTAR   93 (268)
Q Consensus        14 ~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   93 (268)
                      ..+|||++|++|+|+|+|+|+|++||++.+++++|++. +++++.+.|+|+.+.+....+....+.........      
T Consensus         2 ~~~ivl~~~~~p~NiG~i~Rta~afG~~~i~~~~~~~~-~~~~~~~~a~g~~~~~~~~~~~~~~~~~~~~~~~~------   74 (157)
T 1zjr_A            2 DLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGK-KAKINEGITQGSHKWVFIEKVDNPVQKLLEFKNRG------   74 (157)
T ss_dssp             EEEEEEESCCCHHHHHHHHHHHHHHTEEEEEEECSSTT-CCCCCHHHHTTGGGSSEEEECSCHHHHHHHHHHTT------
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCC-CCHHHHHHHCCCCCCCCEEEEEECHHHCCCCCCCC------
T ss_conf             98999958988167899999998659978998589988-50667987433443464689841033201212221------


Q ss_pred             CCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             22343034124203566655311588169999458884243100012322204767873410168899999999999621
Q gi|254780904|r   94 NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI  173 (268)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r~~~  173 (268)
                          .....................++++||||+|+.|||+++++.||..++|||.+.++|||||+|++|+|||++|+..
T Consensus        75 ----~~ii~~~~~~~~~~~~~~~~~~~~~lvlG~E~~Gls~~~~~~~d~~v~IP~~g~~~SLNva~A~aIvl~e~~rq~~  150 (157)
T 1zjr_A           75 ----FQIVATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATGIILYEAQRQRE  150 (157)
T ss_dssp             ----CEEEEEBCSTTSEEGGGSCTTSSEEEEEECBTTBSCHHHHTTCSEEEECCCCSSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             ----EEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHCCCEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHH
T ss_conf             ----0122101233322220135776259996684343789999558869998899999746699999999999998687


Q ss_pred             CCC
Q ss_conf             366
Q gi|254780904|r  174 VSS  176 (268)
Q Consensus       174 ~~~  176 (268)
                      ...
T Consensus       151 ~~~  153 (157)
T 1zjr_A          151 EKG  153 (157)
T ss_dssp             HTT
T ss_pred             HCC
T ss_conf             448