HHsearch alignment of GI: 254780904 and MMDB domain: 2i6d_A_99-257

>2i6d_A (A:99-257) RNA methyltransferase, TRMH family; stuctural genomics, knot, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.85A {Porphyromonas gingivalis W83}
Probab=100.00  E-value=1.6e-32  Score=224.07  Aligned_cols=152  Identities=17%  Similarity=0.123  Sum_probs=118.7

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEE
Q ss_conf             48968999428885479999999997199804980888899999999985310134442001377899841255310120
Q gi|254780904|r   12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATT   91 (268)
Q Consensus        12 ~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~   91 (268)
                      ...+.|||++|++|+|||+|+|+|++||++.+++++|+++++++++.+.|.|+.+.+....+ +++++++..+.      
T Consensus         3 ~~~~~vvl~~~~~~~NiG~i~Rt~~a~G~~~i~l~~~~~~~~~~~~~r~a~ga~~~i~~~~~-~~~~~~~~~~~------   75 (159)
T 2i6d_A            3 VEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASXGALARVQPTPL-KNTVDTLAYFR------   75 (159)
T ss_dssp             CCSEEEEEESCCCHHHHHHHHHHHHHHTCCEEEECTTCCCTTSHHHHHTSTTGGGTCEEEEC-SCHHHHHHHHH------
T ss_pred             CCCEEEEEEEHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC-CCCHHHHHHHH------
T ss_conf             67769998500355559999844650111157774023333443555421111101022233-32100223431------


Q ss_pred             CCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCC-----CCCCCHHHHHHHHHHHH
Q ss_conf             1122343034124203566655311588169999458884243100012322204767-----87341016889999999
Q gi|254780904|r   92 ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVN-----PLFPSLNISQAVLLMVW  166 (268)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~-----~~~~SLNLS~AvaIvlY  166 (268)
                        .........................++++||||+|++||++++++.||..++||+.     +..+|||||+|++|+||
T Consensus        76 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~l~~~d~~v~IP~~~~~m~g~~~SLNva~A~~I~ly  153 (159)
T 2i6d_A           76 --RQGIPVYGAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSVKGHTESLNVAIATAILCS  153 (159)
T ss_dssp             --HTTCCEEEEEEEEEETTTSCCCCTTSCEEEEEEBTTTBSCHHHHTTCSEEEECCCCSSCC----CCCCHHHHHHHHHH
T ss_pred             --CCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCEEHHHHHHHHHH
T ss_conf             --157543222234542100222057763699981566678999998589789989887788999872139999999999


Q ss_pred             HHHHHH
Q ss_conf             999962
Q gi|254780904|r  167 ECMENS  172 (268)
Q Consensus       167 El~r~~  172 (268)
                      |++||.
T Consensus       154 e~~rq~  159 (159)
T 2i6d_A          154 EWRRRS  159 (159)
T ss_dssp             HHHHTC
T ss_pred             HHHHCC
T ss_conf             998478