HHsearch results for GI: 254780904 and protein with PDBid: 1v2x_A
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Probab=100.00 E-value=1.3e-34 Score=236.17 Aligned_cols=176 Identities=18% Similarity=0.262 Sum_probs=124.8
Q ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCE
Q ss_conf 21348968999428885479999999997199804980888899999999985310134442001377899841255310
Q gi|254780904|r 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88 (268)
Q Consensus 9 ~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~ 88 (268)
...+..++|||+++++|+|+|+|+|+|++||+.++++++|.+++++.+ .++++........++.++.+++..+..
T Consensus 17 ~~~~~~~~vvld~v~~p~NlGaIiRta~afG~~~i~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~lk~-- 91 (194)
T 1v2x_A 17 RRRQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPTFN---ETSGGSHKWVYLRVHPDLHEAFRFLKE-- 91 (194)
T ss_dssp TTCBTTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGGSCCCC---SSCSSGGGTSEEEEESSHHHHHHHHHH--
T ss_pred HCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCHHH---HHCCCCCCEEEEEEECCHHHHHHHHHH--
T ss_conf 568999899996798846599999999974996430358866771344---310344312469995589999999997--
Q ss_pred EEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 12011223430341242035666553115881699994588842431000123222047678734101688999999999
Q gi|254780904|r 89 ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 (268)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl 168 (268)
.......................++++||||+|++||++++++.||.+|+|||.+.++|||||+|++|+|||+
T Consensus 92 -------~~~~i~~~~~~~~~~~~~~~~~~~~~~lVfG~E~~Gls~e~l~~~d~~v~IPm~~~~~SLNvs~A~aI~lyE~ 164 (194)
T 1v2x_A 92 -------RGFTVYATALREDARDFREVDYTKPTAVLFGAEKWGVSEEALALADGAIKIPMLGMVQSLNVSVAAAVILFEA 164 (194)
T ss_dssp -------TTCEEEEECCCTTSEEGGGSCTTSSEEEEECBTTTBSCHHHHHHSSEEEECCCCSSCSCCCHHHHHHHHHHHH
T ss_pred -------CCCEEEECCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHHHHH
T ss_conf -------5982542012222454011026888289976767889999998589799958999986326999999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99621366544433333468888999999999
Q gi|254780904|r 169 MENSIVSSEKNVKEQNTPATKGELLSFLDYLE 200 (268)
Q Consensus 169 ~r~~~~~~~~~~~~~~~~a~~~~l~~~~~~l~ 200 (268)
+||.....-... +..+.++...++.+|.
T Consensus 165 ~Rq~~~~g~~~~----~~~~~~~~~~~l~~~~ 192 (194)
T 1v2x_A 165 QRQRLKAGLYDR----PRLDPELYQKVLADWL 192 (194)
T ss_dssp HHHHHHHTGGGS----CCSCHHHHHHHHHHC-
T ss_pred HHHHHHCCCCCC----CCCCHHHHHHHHHHHH
T ss_conf 997764579888----7899999999999997