HHsearch results for GI: 254780904 and protein with PDBid: 1zjr_A

>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}
Probab=100.00  E-value=6.8e-34  Score=231.71  Aligned_cols=178  Identities=13%  Similarity=0.118  Sum_probs=128.8

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEE
Q ss_conf             13489689994288854799999999971998049808888999999999853101344420013778998412553101
Q gi|254780904|r   10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYA   89 (268)
Q Consensus        10 ~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~   89 (268)
                      ..+...+|||+++++|+|+|+|+|+|++||++.+++++|.+.. ++...+.++|+...+....+. ++.+++..+...  
T Consensus        21 ~~~~~l~vvLd~i~~p~NiGaI~Rta~afG~~~v~l~~~~~~~-~~~~~~~s~gs~~~~~~~~~~-~~~~~l~~~~~~--   96 (211)
T 1zjr_A           21 KRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKK-AKINEGITQGSHKWVFIEKVD-NPVQKLLEFKNR--   96 (211)
T ss_dssp             TCEEEEEEEEESCCCHHHHHHHHHHHHHHTEEEEEEECSSTTC-CCCCHHHHTTGGGSSEEEECS-CHHHHHHHHHHT--
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCC-CHHHHHHHCCCCCEEEEEEEC-CHHHHHHHHHHC--
T ss_conf             4899989999589884379999999998589889994898886-277888852441035799967-889998765404--


Q ss_pred             EECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             20112234303412420356665531158816999945888424310001232220476787341016889999999999
Q gi|254780904|r   90 TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM  169 (268)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~  169 (268)
                             ......................++++||||+|++|||+++++.||..++|||.+.++|||||+|++|+|||+.
T Consensus        97 -------~~~i~~~~~~~~~~~~~~~~~~~~~~lvfG~E~~GLs~e~l~~~d~~v~IPm~g~~~SLNvs~A~aI~lyE~~  169 (211)
T 1zjr_A           97 -------GFQIVATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATGIILYEAQ  169 (211)
T ss_dssp             -------TCEEEEEBCSTTSEEGGGSCTTSSEEEEEECBTTBSCHHHHTTCSEEEECCCCSSCSSCCHHHHHHHHHHHHH
T ss_pred             -------CCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHHHHHH
T ss_conf             -------8448874033333222124566306999767667899999985798999779999970049999999999999


Q ss_pred             HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             962136654443333346888899999999999
Q gi|254780904|r  170 ENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS  202 (268)
Q Consensus       170 r~~~~~~~~~~~~~~~~a~~~~l~~~~~~l~~~  202 (268)
                      ||.....-..    .+..+++|.+.++..|..-
T Consensus       170 Rqr~~~~~~~----~~~l~~~e~~~ll~~~~~~  198 (211)
T 1zjr_A          170 RQREEKGMYS----RPSLSEEEIQKILKKWAYE  198 (211)
T ss_dssp             HHHHHTTTTS----SCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCC----CCCCCHHHHHHHHHHHCCH
T ss_conf             8687458988----8897999999999976048