HHsearch results for GI: 254780904 and protein with PDBid: 1zjr_A
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}
Probab=100.00 E-value=6.8e-34 Score=231.71 Aligned_cols=178 Identities=13% Similarity=0.118 Sum_probs=128.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEE
Q ss_conf 13489689994288854799999999971998049808888999999999853101344420013778998412553101
Q gi|254780904|r 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYA 89 (268)
Q Consensus 10 ~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268)
..+...+|||+++++|+|+|+|+|+|++||++.+++++|.+.. ++...+.++|+...+....+. ++.+++..+...
T Consensus 21 ~~~~~l~vvLd~i~~p~NiGaI~Rta~afG~~~v~l~~~~~~~-~~~~~~~s~gs~~~~~~~~~~-~~~~~l~~~~~~-- 96 (211)
T 1zjr_A 21 KRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKK-AKINEGITQGSHKWVFIEKVD-NPVQKLLEFKNR-- 96 (211)
T ss_dssp TCEEEEEEEEESCCCHHHHHHHHHHHHHHTEEEEEEECSSTTC-CCCCHHHHTTGGGSSEEEECS-CHHHHHHHHHHT--
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCC-CHHHHHHHCCCCCEEEEEEEC-CHHHHHHHHHHC--
T ss_conf 4899989999589884379999999998589889994898886-277888852441035799967-889998765404--
Q ss_pred EECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 20112234303412420356665531158816999945888424310001232220476787341016889999999999
Q gi|254780904|r 90 TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 (268)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~ 169 (268)
......................++++||||+|++|||+++++.||..++|||.+.++|||||+|++|+|||+.
T Consensus 97 -------~~~i~~~~~~~~~~~~~~~~~~~~~~lvfG~E~~GLs~e~l~~~d~~v~IPm~g~~~SLNvs~A~aI~lyE~~ 169 (211)
T 1zjr_A 97 -------GFQIVATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATGIILYEAQ 169 (211)
T ss_dssp -------TCEEEEEBCSTTSEEGGGSCTTSSEEEEEECBTTBSCHHHHTTCSEEEECCCCSSCSSCCHHHHHHHHHHHHH
T ss_pred -------CCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHHHHHH
T ss_conf -------8448874033333222124566306999767667899999985798999779999970049999999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 962136654443333346888899999999999
Q gi|254780904|r 170 ENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202 (268)
Q Consensus 170 r~~~~~~~~~~~~~~~~a~~~~l~~~~~~l~~~ 202 (268)
||.....-.. .+..+++|.+.++..|..-
T Consensus 170 Rqr~~~~~~~----~~~l~~~e~~~ll~~~~~~ 198 (211)
T 1zjr_A 170 RQREEKGMYS----RPSLSEEEIQKILKKWAYE 198 (211)
T ss_dssp HHHHHTTTTS----SCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCC----CCCCCHHHHHHHHHHHCCH
T ss_conf 8687458988----8897999999999976048