HHsearch results for GI: 254780904 and protein with PDBid: 3e5y_A
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305}
Probab=99.97 E-value=9.1e-32 Score=218.30 Aligned_cols=152 Identities=19% Similarity=0.140 Sum_probs=107.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEEC
Q ss_conf 89689994288854799999999971998049808888999999999853101344420013778998412553101201
Q gi|254780904|r 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTA 92 (268)
Q Consensus 13 ~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 92 (268)
..+.|||++|++|+|||+|+|+|++||++.++++.+.+++.+.+..+.+++...... .......++..........
T Consensus 4 ~~~~ivL~~p~~P~NiGaI~Rta~afGi~~viv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--- 79 (160)
T 3e5y_A 4 SMFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQ-MRVHRDWDAFVAAEAPDPA--- 79 (160)
T ss_dssp -CCEEEEESCCCHHHHHHHHHHHHHHTCEEEEESSCSSCCCHHHHHHTTCCHHHHHT-CEEESSHHHHHHHHCCCGG---
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEE-EEEECCHHHHHHHHHCCCC---
T ss_conf 757999948999983999999999849957852699864026899987416258764-5663218889988750583---
Q ss_pred CCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC--CCCEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 12234303412420356665531158816999945888424310001--2322204767873410168899999999999
Q gi|254780904|r 93 RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECME 170 (268)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~--cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r 170 (268)
....................+++||||+|++|||+++++. ||++++|||.+.++|||||+|++|+|||++|
T Consensus 80 -------~~~~~~~~~~~~~~~~~~~~k~~lv~G~E~~Gls~~~l~~~~~d~~v~IPm~~~~~SLNvsvAaaI~lyE~~R 152 (160)
T 3e5y_A 80 -------RMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWR 152 (160)
T ss_dssp -------GEEEECSTTCEEGGGSCCCTTCEEEEEBTTTBSCHHHHTTSCGGGEEECCCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred -------EEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHEECCCCCCCCCEEEHHHHHHHHHHHHHH
T ss_conf -------6999730123322112456523999804778899899986303232334799998716699999999999997
Q ss_pred HHCCC
Q ss_conf 62136
Q gi|254780904|r 171 NSIVS 175 (268)
Q Consensus 171 ~~~~~ 175 (268)
|....
T Consensus 153 q~~~~ 157 (160)
T 3e5y_A 153 QAGFE 157 (160)
T ss_dssp HTTTT
T ss_pred CCCCC
T ss_conf 61899