HHSEARCH alignment of GI: 254780904 and SCOP domain: d1mxia_

Alignment
>d1mxia_ c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue) {Haemophilus influenzae [TaxId: 727]}
Probab=99.97  E-value=1.5e-31  Score=215.40  Aligned_cols=149  Identities=16%  Similarity=0.154  Sum_probs=108.4

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEECCC
Q ss_conf             68999428885479999999997199804980888899999999985310134442001377899841255310120112
Q gi|254780904|r   15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN   94 (268)
Q Consensus        15 ~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   94 (268)
                      +.||||+|++|+|||+|+|+|++||++ .+++.++++++.....+.+.++...........................   
T Consensus         2 ~~ivL~~p~~P~NlGai~Rta~afGv~-~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   77 (156)
T d1mxia_           2 LDIVLYEPEIPQNTGNIIRLCANTGFR-LHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTFEAFLESEKPKRLFA---   77 (156)
T ss_dssp             CEEEEESCCCHHHHHHHHHHHHHHTCE-EEEESSCSSCTTCHHHHTTSCCGGGSSSCEEESSHHHHHHHHCCSEEEE---
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHCCCC-EEEEECCCCCCCCHHHHHCCCCCCEEEEEEEECHHHHHHHHHHCCCEEE---
T ss_conf             399991898999199999999975995-9999158876311212202255413432453003666666430243022---


Q ss_pred             CCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC--CCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             23430341242035666553115881699994588842431000--1232220476787341016889999999999962
Q gi|254780904|r   95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS  172 (268)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~--~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r~~  172 (268)
                               ................+.+||||+|++||++++++  .||.+++|||.+.++|||||+|++|+|||++||.
T Consensus        78 ---------~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~~~d~~v~IPm~g~~~SLNvs~A~aI~lyE~~RQ~  148 (156)
T d1mxia_          78 ---------LTTKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQL  148 (156)
T ss_dssp             ---------ECTTCSSBGGGSCCCTTEEEEECCTTTCSCHHHHTTSCGGGEEBCCCCTTCCCCCHHHHHHHHHHHHHHHT
T ss_pred             ---------EECCCCCCHHCCCCCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCEEEHHHHHHHHHHHHHHHC
T ss_conf             ---------20012231010245642179972577757999994255886998489999974079999999999999835


Q ss_pred             CCCC
Q ss_conf             1366
Q gi|254780904|r  173 IVSS  176 (268)
Q Consensus       173 ~~~~  176 (268)
                      ....
T Consensus       149 ~~~g  152 (156)
T d1mxia_         149 GYKG  152 (156)
T ss_dssp             TTTT
T ss_pred             CCCC
T ss_conf             9986


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: SpoU-like RNA 2'-O ribose methyltransferase
domain: Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue)
species: Haemophilus influenzae [TaxId: 727]