Query gi|254780904|ref|YP_003065317.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 268 No_of_seqs 177 out of 3436 Neff 7.7 Searched_HMMs 13730 Date Wed Jun 1 10:46:14 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780904.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1gz0a1 c.116.1.1 (A:78-243) R 100.0 3.4E-35 2.5E-39 238.4 13.0 153 9-172 13-165 (166) 2 d1ipaa1 c.116.1.1 (A:106-263) 100.0 2.8E-34 2.1E-38 232.6 12.2 155 6-173 3-157 (158) 3 d1v2xa_ c.116.1.1 (A:) tRNA (G 100.0 3.3E-34 2.4E-38 232.1 10.8 175 9-199 17-191 (191) 4 d1mxia_ c.116.1.1 (A:) Hypothe 100.0 1.5E-31 1.1E-35 215.4 12.8 149 15-176 2-152 (156) 5 d1pvva2 c.78.1.1 (A:151-313) O 91.7 0.37 2.7E-05 24.2 8.1 78 12-92 2-81 (163) 6 d1dxha2 c.78.1.1 (A:151-335) O 88.9 0.62 4.5E-05 22.8 6.3 78 12-92 3-83 (185) 7 d1otha2 c.78.1.1 (A:185-354) O 87.4 0.8 5.8E-05 22.1 6.2 78 12-92 2-81 (170) 8 d1vlva2 c.78.1.1 (A:153-313) O 83.0 1.3 9.3E-05 20.8 7.3 79 13-92 2-81 (161) 9 d1k3ra2 c.116.1.2 (A:1-92,A:16 80.2 1.6 0.00012 20.2 8.9 135 19-167 15-185 (191) 10 d1js1x2 c.78.1.1 (X:164-324) T 77.4 1.9 0.00014 19.7 6.0 54 25-89 18-72 (161) 11 d1duvg2 c.78.1.1 (G:151-333) O 75.1 2.2 0.00016 19.3 6.6 79 12-92 3-83 (183) 12 d1tuga1 c.78.1.1 (A:1-150,A:15 74.4 2.3 0.00017 19.2 6.6 79 10-91 150-229 (310) 13 d1ml4a2 c.78.1.1 (A:152-308) A 66.7 3.4 0.00025 18.1 6.1 75 13-91 3-78 (157) 14 d2at2a2 c.78.1.1 (A:145-295) A 64.1 3.8 0.00028 17.8 4.4 65 13-91 2-67 (151) 15 d1ekxa2 c.78.1.1 (A:151-310) A 60.6 4.4 0.00032 17.4 5.7 76 13-91 3-79 (160) 16 d1nxza2 c.116.1.5 (A:74-247) H 54.1 5.7 0.00041 16.7 11.7 143 16-169 7-164 (174) 17 d1pg5a2 c.78.1.1 (A:147-299) A 51.2 6.3 0.00046 16.4 5.0 71 13-91 2-75 (153) 18 d1i0za1 c.2.1.5 (A:1-160) Lact 47.5 7.2 0.00053 16.1 5.4 80 9-95 15-100 (160) 19 d2o3aa1 c.116.1.8 (A:1-167) Un 38.5 10 0.00072 15.2 7.5 55 109-169 87-141 (167) 20 d1uxja1 c.2.1.5 (A:2-143) Mala 37.4 10 0.00075 15.1 3.4 26 25-50 9-35 (142) 21 d2qwva1 c.116.1.7 (A:5-205) Un 36.8 11 0.00077 15.0 3.8 53 114-171 141-197 (201) 22 d1vhka2 c.116.1.5 (A:74-253) H 36.0 11 0.00079 15.0 10.2 120 18-141 10-145 (180) 23 d2qmma1 c.116.1.7 (A:95-288) U 35.6 11 0.0008 14.9 3.9 55 114-171 136-192 (194) 24 d1hyha1 c.2.1.5 (A:21-166) L-2 34.4 11 0.00082 14.8 2.3 24 25-48 9-34 (146) 25 d1pzga1 c.2.1.5 (A:14-163) Lac 33.8 12 0.00086 14.7 6.5 80 12-95 5-88 (154) 26 d1mx3a1 c.2.1.4 (A:126-318) Tr 31.7 13 0.00093 14.5 5.0 58 24-93 56-114 (193) 27 d1guza1 c.2.1.5 (A:1-142) Mala 30.7 13 0.00097 14.4 2.8 25 25-49 8-34 (142) 28 d1a5za1 c.2.1.5 (A:22-163) Lac 29.8 14 0.001 14.3 2.4 65 25-93 8-77 (140) 29 d1llda1 c.2.1.5 (A:7-149) Lact 27.7 15 0.0011 14.1 2.2 67 25-95 9-81 (143) 30 d1e8ca2 c.59.1.1 (A:338-497) U 26.0 16 0.0012 13.9 5.6 38 10-47 9-46 (160) 31 d2csua1 c.2.1.8 (A:1-129) Acet 25.2 17 0.0012 13.8 4.6 87 13-126 7-96 (129) 32 d1ygya1 c.2.1.4 (A:99-282) Pho 24.4 17 0.0012 13.7 3.2 62 16-93 46-108 (184) 33 d1v6za2 c.116.1.5 (A:67-228) H 21.1 20 0.0015 13.3 9.0 136 16-166 7-154 (162) 34 d2ccaa2 a.93.1.3 (A:436-720) C 20.7 20 0.0015 13.2 3.3 37 218-254 171-207 (285) 35 d1alla_ a.1.1.3 (A:) Allophyco 20.5 21 0.0015 13.2 2.9 48 149-203 112-159 (160) 36 d1jvna2 c.23.16.1 (A:-3-229) G 20.3 21 0.0015 13.2 3.6 36 13-49 3-38 (232) No 1 >d1gz0a1 c.116.1.1 (A:78-243) RlmB, C-terminal domain {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=3.4e-35 Score=238.40 Aligned_cols=153 Identities=16% Similarity=0.124 Sum_probs=123.2 Q ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCE Q ss_conf 21348968999428885479999999997199804980888899999999985310134442001377899841255310 Q gi|254780904|r 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88 (268) Q Consensus 9 ~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~ 88 (268) ....+..+|||+++++|+|+|+|+|+|++||++.++++.++++++++++.+.|+|+.+.+... .+.++.++++.+.... T Consensus 13 ~~~~~~~~vvLd~i~~p~N~GaiiRta~afG~~~v~~~~~~~~~~~~~~~r~s~g~~~~v~~~-~~~~~~~~l~~~~~~~ 91 (166) T d1gz0a1 13 ASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLI-RVTNLARTMRMLQEEN 91 (166) T ss_dssp HTCSSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESSSSCCCCHHHHHHHTTHHHHSCEE-EESCHHHHHHHHHHTT T ss_pred HCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHEECCCCCEEECEE-ECCCHHHHHHHHCCCC T ss_conf 466898799995788865599999999852886465402543110012312313750376506-6399999998701243 Q ss_pred EEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 12011223430341242035666553115881699994588842431000123222047678734101688999999999 Q gi|254780904|r 89 ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 (268) Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl 168 (268) .. .... ..............++++||||+|++|||+++++.||..++|||.+.++|||||+|++|+|||+ T Consensus 92 ~~---------~~~~-~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v~IPm~~~~~SLNvs~A~~I~lye~ 161 (166) T d1gz0a1 92 IW---------IVGT-AGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEA 161 (166) T ss_dssp CE---------EEEE-CTTCSEEGGGSCCCSSEEEEEEBTTTBSCHHHHHTCSEEEECCCSSSSCCCCHHHHHHHHHHHH T ss_pred CC---------CCCC-CCCCCCCHHHHHCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCCEEHHHHHHHHHHHH T ss_conf 21---------1123-4544454788514687389966676787799998689899970968997546999999999999 Q ss_pred HHHH Q ss_conf 9962 Q gi|254780904|r 169 MENS 172 (268) Q Consensus 169 ~r~~ 172 (268) +||. T Consensus 162 ~rqr 165 (166) T d1gz0a1 162 VRQR 165 (166) T ss_dssp HHHT T ss_pred HHCC T ss_conf 9755 No 2 >d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=100.00 E-value=2.8e-34 Score=232.59 Aligned_cols=155 Identities=17% Similarity=0.173 Sum_probs=115.8 Q ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCC Q ss_conf 55321348968999428885479999999997199804980888899999999985310134442001377899841255 Q gi|254780904|r 6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85 (268) Q Consensus 6 ~~l~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~ 85 (268) ++......+.+|||+++++|+|+|||+|+|++||++.++++++ +++.++++.+.++|+.+...... ....+++..+. T Consensus 3 e~~~~~~~~~~lvld~i~dP~NlGai~Rta~~fG~~~v~~~~~-~~~~~~~~~r~s~g~~~~~~~~~--~~~~~~~~~~~ 79 (158) T d1ipaa1 3 EEYRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGG-VDLYSPQVIRNSTGVVFSLRTLA--ASESEVLDWIK 79 (158) T ss_dssp CCCCCCTTCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESC-CCTTCHHHHHHTTTGGGTSCEEE--ECHHHHHHHHH T ss_pred HHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHCCC-CCCCCHHHHEECCCCEEEECCCC--CCHHHHHHHHH T ss_conf 4407799988999968978753899999998602401222056-44333346201124022311001--13699999998 Q ss_pred CCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHH Q ss_conf 31012011223430341242035666553115881699994588842431000123222047678734101688999999 Q gi|254780904|r 86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165 (268) Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvl 165 (268) .... ....... ............++++||||+|++|||+++++.||..++|||.+.++|||||+|++|+| T Consensus 80 --------~~~~-~i~~~~~-~~~~~~~~~~~~~~~~lvfG~E~~Gls~~~l~~~d~~v~IP~~g~~~SLNvs~A~aI~l 149 (158) T d1ipaa1 80 --------QHNL-PLVATTP-HAEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQADSLNVSVSAALLL 149 (158) T ss_dssp --------HTTC-CEEEECT-TCSSBGGGSCCCSSEEEEECCTTSCCCHHHHHHCSEEEBCCCCSSCCCCCHHHHHHHHH T ss_pred --------HHCC-CCCCCCC-CCCCCCHHCCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHH T ss_conf --------6213-4322222-22221000024766289974555666799998488799976899997376999999999 Q ss_pred HHHHHHHC Q ss_conf 99999621 Q gi|254780904|r 166 WECMENSI 173 (268) Q Consensus 166 YEl~r~~~ 173 (268) ||++||+. T Consensus 150 yE~~RQr~ 157 (158) T d1ipaa1 150 YEALRQRL 157 (158) T ss_dssp HHHHHHHT T ss_pred HHHHHHHC T ss_conf 99997533 No 3 >d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]} Probab=100.00 E-value=3.3e-34 Score=232.14 Aligned_cols=175 Identities=19% Similarity=0.267 Sum_probs=123.3 Q ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCE Q ss_conf 21348968999428885479999999997199804980888899999999985310134442001377899841255310 Q gi|254780904|r 9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88 (268) Q Consensus 9 ~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~ 88 (268) ...+...+|||+++++|+|||+|+|+|++||++++++++|.+++++.. +.++++ ........+.+..+++..+... T Consensus 17 ~~~~~~~~vvLd~i~~p~NiG~IiRta~afG~~~v~l~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~l~~l~~~- 92 (191) T d1v2xa_ 17 RRRQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPTFN--ETSGGS-HKWVYLRVHPDLHEAFRFLKER- 92 (191) T ss_dssp TTCBTTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGGSCCCC--SSCSSG-GGTSEEEEESSHHHHHHHHHHT- T ss_pred HCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE--ECCHHH-HEEECCCCCCHHHHHHHHHHHC- T ss_conf 657999799995798875489999999851223201248864530110--000112-0120122233025678888636- Q ss_pred EEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 12011223430341242035666553115881699994588842431000123222047678734101688999999999 Q gi|254780904|r 89 ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168 (268) Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl 168 (268) ....................+.++++||||+|+.|||+++++.||..|+|||.+.++|||||+|++|+|||+ T Consensus 93 --------~~~i~~~~~~~~~~~~~~~~~~~~~~lV~G~E~~Gls~~~l~~~d~~v~IPm~~~~~SLNvsvAa~I~lyE~ 164 (191) T d1v2xa_ 93 --------GFTVYATALREDARDFREVDYTKPTAVLFGAEKWGVSEEALALADGAIKIPMLGMVQSLNVSVAAAVILFEA 164 (191) T ss_dssp --------TCEEEEECCCTTSEEGGGSCTTSSEEEEECBTTTBSCHHHHHHSSEEEECCCCSSCSCCCHHHHHHHHHHHH T ss_pred --------CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH T ss_conf --------874211111122332211247888089973666536599998378679968999966332999999999999 Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 9962136654443333346888899999999 Q gi|254780904|r 169 MENSIVSSEKNVKEQNTPATKGELLSFLDYL 199 (268) Q Consensus 169 ~r~~~~~~~~~~~~~~~~a~~~~l~~~~~~l 199 (268) +||......... +....++++.+++.| T Consensus 165 ~rq~~~~g~~~~----~~~~~~~~~~l~~~~ 191 (191) T d1v2xa_ 165 QRQRLKAGLYDR----PRLDPELYQKVLADW 191 (191) T ss_dssp HHHHHHHTGGGS----CCSCHHHHHHHHHHC T ss_pred HHHHHHCCCCCC----CCCCHHHHHHHHHCC T ss_conf 999986568887----789999999998349 No 4 >d1mxia_ c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue) {Haemophilus influenzae [TaxId: 727]} Probab=99.97 E-value=1.5e-31 Score=215.40 Aligned_cols=149 Identities=16% Similarity=0.154 Sum_probs=108.4 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEECCC Q ss_conf 68999428885479999999997199804980888899999999985310134442001377899841255310120112 Q gi|254780904|r 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94 (268) Q Consensus 15 ~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 94 (268) +.||||+|++|+|||+|+|+|++||++ .+++.++++++.....+.+.++........................... T Consensus 2 ~~ivL~~p~~P~NlGai~Rta~afGv~-~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 77 (156) T d1mxia_ 2 LDIVLYEPEIPQNTGNIIRLCANTGFR-LHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTFEAFLESEKPKRLFA--- 77 (156) T ss_dssp CEEEEESCCCHHHHHHHHHHHHHHTCE-EEEESSCSSCTTCHHHHTTSCCGGGSSSCEEESSHHHHHHHHCCSEEEE--- T ss_pred EEEEEECCCCCCCHHHHHHHHHHCCCC-EEEEECCCCCCCCHHHHHCCCCCCEEEEEEEECHHHHHHHHHHCCCEEE--- T ss_conf 399991898999199999999975995-9999158876311212202255413432453003666666430243022--- Q ss_pred CCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC--CCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 23430341242035666553115881699994588842431000--1232220476787341016889999999999962 Q gi|254780904|r 95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172 (268) Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~--~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r~~ 172 (268) ................+.+||||+|++||++++++ .||.+++|||.+.++|||||+|++|+|||++||. T Consensus 78 ---------~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~~~d~~v~IPm~g~~~SLNvs~A~aI~lyE~~RQ~ 148 (156) T d1mxia_ 78 ---------LTTKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148 (156) T ss_dssp ---------ECTTCSSBGGGSCCCTTEEEEECCTTTCSCHHHHTTSCGGGEEBCCCCTTCCCCCHHHHHHHHHHHHHHHT T ss_pred ---------EECCCCCCHHCCCCCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCEEEHHHHHHHHHHHHHHHC T ss_conf ---------20012231010245642179972577757999994255886998489999974079999999999999835 Q ss_pred CCCC Q ss_conf 1366 Q gi|254780904|r 173 IVSS 176 (268) Q Consensus 173 ~~~~ 176 (268) .... T Consensus 149 ~~~g 152 (156) T d1mxia_ 149 GYKG 152 (156) T ss_dssp TTTT T ss_pred CCCC T ss_conf 9986 No 5 >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=91.74 E-value=0.37 Score=24.23 Aligned_cols=78 Identities=21% Similarity=0.231 Sum_probs=60.4 Q ss_pred CCCCEEEEECCCCCCHH-HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCCCHHCCCCHHHHHHCCCCCEE Q ss_conf 48968999428885479-99999999719980498088889999999998531-01344420013778998412553101 Q gi|254780904|r 12 AKGPVIILVDPQLGENI-GMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHFIYA 89 (268) Q Consensus 12 ~~~~~vVLv~p~~p~Ni-GaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268) -++..|++|+. -.|+ -|.+.++.-||+ ++.++.|....+.++....+.. +........++.+..+++.+++.+.. T Consensus 2 l~gl~Ia~VGD--~~nv~~Sli~~l~~~g~-~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~ 78 (163) T d1pvva2 2 IKGVKVVYVGD--GNNVAHSLMIAGTKLGA-DVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYT 78 (163) T ss_dssp CTTCEEEEESC--CCHHHHHHHHHHHHTTC-EEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEE T ss_pred CCCCEEEEECC--CCHHHHHHHHHHHHCCC-EEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCEEEE T ss_conf 58999999889--71899999999998599-4897365002787689999987510355508996598998614448854 Q ss_pred EEC Q ss_conf 201 Q gi|254780904|r 90 TTA 92 (268) Q Consensus 90 ~~~ 92 (268) +.- T Consensus 79 ~~~ 81 (163) T d1pvva2 79 DVW 81 (163) T ss_dssp CCC T ss_pred CCE T ss_conf 112 No 6 >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} Probab=88.90 E-value=0.62 Score=22.77 Aligned_cols=78 Identities=13% Similarity=0.187 Sum_probs=56.4 Q ss_pred CCCCEEEEECCCCCC-H-HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCCCHHCCCCHHHHHHCCCCCE Q ss_conf 489689994288854-7-999999999719980498088889999999998531-0134442001377899841255310 Q gi|254780904|r 12 AKGPVIILVDPQLGE-N-IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHFIY 88 (268) Q Consensus 12 ~~~~~vVLv~p~~p~-N-iGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~~~ 88 (268) -++..|..++ |.. | .=|.++++.-||+ +++++.|....+.++....+.. +........+..+.++++++.+.+. T Consensus 3 l~~lkia~vG--D~~nnV~~Sli~~~~~~G~-~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVy 79 (185) T d1dxha2 3 LHDISYAYLG--DARNNMGNSLLLIGAKLGM-DVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVH 79 (185) T ss_dssp GGGCEEEEES--CCSSHHHHHHHHHHHHTTC-EEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEE T ss_pred CCCCEEEEEC--CCCCHHHHHHHHHHHHCCC-EEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCEEE T ss_conf 8888899986--7845599999999998599-799986679875137899998876415881899967465023145897 Q ss_pred EEEC Q ss_conf 1201 Q gi|254780904|r 89 ATTA 92 (268) Q Consensus 89 ~~~~ 92 (268) .+.- T Consensus 80 t~~w 83 (185) T d1dxha2 80 TDVW 83 (185) T ss_dssp ECCC T ss_pred EEHH T ss_conf 2211 No 7 >d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} Probab=87.37 E-value=0.8 Score=22.10 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=57.7 Q ss_pred CCCCEEEEECCCCCCHH-HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCCCHHCCCCHHHHHHCCCCCEE Q ss_conf 48968999428885479-99999999719980498088889999999998531-01344420013778998412553101 Q gi|254780904|r 12 AKGPVIILVDPQLGENI-GMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHFIYA 89 (268) Q Consensus 12 ~~~~~vVLv~p~~p~Ni-GaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268) -+|..|.+|+. ..|| -|.++++.-||+ +++++.|....+.++....... ..........+.++.+++.+.+.+.. T Consensus 2 l~gl~I~~vGD--~~nV~~Sli~~~~~~g~-~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~ 78 (170) T d1otha2 2 LKGLTLSWIGD--GNNILHSIMMSAAKFGM-HLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLIT 78 (170) T ss_dssp CTTCEEEEESC--SSHHHHHHHTTTGGGTC-EEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEE T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHHCCC-EEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHEEE T ss_conf 78999999837--56489999999998699-7999734324786688999999875169979998599999746123253 Q ss_pred EEC Q ss_conf 201 Q gi|254780904|r 90 TTA 92 (268) Q Consensus 90 ~~~ 92 (268) ..- T Consensus 79 ~~~ 81 (170) T d1otha2 79 DTW 81 (170) T ss_dssp CCS T ss_pred ECE T ss_conf 010 No 8 >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} Probab=82.96 E-value=1.3 Score=20.81 Aligned_cols=79 Identities=18% Similarity=0.183 Sum_probs=56.9 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHH-HCCCCCCCHHCCCCHHHHHHCCCCCEEEE Q ss_conf 89689994288854799999999971998049808888999999999853-10134442001377899841255310120 Q gi|254780904|r 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-NADCVIDSVRVFSNLKEAIADLHFIYATT 91 (268) Q Consensus 13 ~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~-~a~~~~~~~~~~~~~~~a~~~~~~~~~~~ 91 (268) +|..|+.++--+-.=.-|.+.++.-||+ +++++.|....++++....+. .+........+..+.++++++.+.+..+. T Consensus 2 ~g~ki~~vGD~~nnV~~Sli~~~~~~g~-~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~ 80 (161) T d1vlva2 2 KGVKVVFMGDTRNNVATSLMIACAKMGM-NFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV 80 (161) T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHTTC-EEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCC-EEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHEECCC T ss_conf 9999999927856899999999998599-799955303341125788888887503876389706787301210000010 Q ss_pred C Q ss_conf 1 Q gi|254780904|r 92 A 92 (268) Q Consensus 92 ~ 92 (268) - T Consensus 81 ~ 81 (161) T d1vlva2 81 W 81 (161) T ss_dssp C T ss_pred E T ss_conf 0 No 9 >d1k3ra2 c.116.1.2 (A:1-92,A:164-262) Hypothetical protein MTH1 (MT0001), dimerisation domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=80.22 E-value=1.6 Score=20.20 Aligned_cols=135 Identities=15% Similarity=0.130 Sum_probs=62.2 Q ss_pred EECCCCC----CHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHH-------------HH----------HHCC------ Q ss_conf 9428885----4799999999971998049808888999999999-------------85----------3101------ Q gi|254780904|r 19 LVDPQLG----ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-------------SS----------ANAD------ 65 (268) Q Consensus 19 Lv~p~~p----~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~-------------~a----------~~a~------ 65 (268) |.+.+++ .-+|-|||++.-|+++.+++.+..... +.+-++ .. +|.. T Consensus 15 l~~~~s~~~~t~~~g~iARa~~if~Vdeivv~dd~~~~-~~~~l~~iL~YletP~YLRK~lfp~~~~Lk~aGlLpPL~~p 93 (191) T d1k3ra2 15 TAETGDLKIKTYKVVLIARAASIFGVKRIVIYHDDADG-EARFIRDILTYMDTPQYLRRKVFPIMRELKHVGILPPLRTG 93 (191) T ss_dssp TTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEECSSCC-CHHHHHHHHHHHHSCHHHHHHHCCCCGGGGGGGGCCCCCCC T ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 56688889999999999999982165579998279832-76999999998728900101237778662202588873378 Q ss_pred -CCCC-CHHCCCCHHHHHHCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCE Q ss_conf -3444-20013778998412553101201122343034124203566655311588169999458884243100012322 Q gi|254780904|r 66 -CVID-SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143 (268) Q Consensus 66 -~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~ 143 (268) .+.. .......+. ..+.+..++|+.+..... .............+.+.+|||.=..||..- . .|.. T Consensus 94 ~hv~~~~~~~~~~l~--~~g~d~~I~TSr~G~~i~-------~~~~~~~~~~~~~~~~lvVFGgP~~Gl~~i--~-~D~~ 161 (191) T d1k3ra2 94 YEVLDTRRNLAESLK--TVGADVVVATSRNASPIT-------SILDEVKTRMRGAREAAILFGGPYKGLPEI--D-ADIW 161 (191) T ss_dssp CEEEEEEEEHHHHHH--HHCCSEEEEECTTSCBTT-------TSHHHHHHHHTTCSEEEEECCCSSSCCCSC--C-CSEE T ss_pred CCCCCCCCCCCCCCC--CCCCCEEEEECCCCCCHH-------HHHHHCCCCCCCCCEEEEEECCCCCCCHHH--H-CCEE T ss_conf 642012464000221--279976998578986734-------642111355667873899989965686666--4-7848 Q ss_pred -EECCCCCCCCCHHHHHHHHHHHHH Q ss_conf -204767873410168899999999 Q gi|254780904|r 144 -ISFPVNPLFPSLNISQAVLLMVWE 167 (268) Q Consensus 144 -v~IPt~~~~~SLNLS~AvaIvlYE 167 (268) -++|- ......=.=-|+.|.|-- T Consensus 162 vNt~P~-QGsrtIRTEEAv~itLa~ 185 (191) T d1k3ra2 162 VNTLPG-QCTETVRTEEAVLATLSV 185 (191) T ss_dssp EBSSTT-CSSSCCCHHHHHHHHHHH T ss_pred EECCCC-CCCCCEEHHHHHHHHHHH T ss_conf 975899-887610088899999998 No 10 >d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]} Probab=77.43 E-value=1.9 Score=19.66 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=42.9 Q ss_pred CCHH-HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEE Q ss_conf 5479-9999999971998049808888999999999853101344420013778998412553101 Q gi|254780904|r 25 GENI-GMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYA 89 (268) Q Consensus 25 p~Ni-GaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268) |.|| -|.++++..||+ ++.++.|+...++++.. ..+.++.+..+++++.+.+.. T Consensus 18 ~~~Va~S~i~~l~~~G~-~v~~~~P~~~~p~~~~~----------~~~~~~~d~~eav~~aDvI~t 72 (161) T d1js1x2 18 PQAVPNSFAEWMNATDY-EFVITHPEGYELDPKFV----------GNARVEYDQMKAFEGADFIYA 72 (161) T ss_dssp CSHHHHHHHHHHHTSSS-EEEEECCTTCCCCHHHH----------TTCEEESCHHHHHTTCSEEEE T ss_pred CCHHHHHHHHHHHHCCC-EEEEECCCCCCCCHHHH----------CCCEEECCHHHHHCCCCCEEE T ss_conf 65879999999998599-79997783138897996----------784176088998387761010 No 11 >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} Probab=75.07 E-value=2.2 Score=19.27 Aligned_cols=79 Identities=18% Similarity=0.283 Sum_probs=56.8 Q ss_pred CCCCEEEEECCCCCCHH-HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCCCHHCCCCHHHHHHCCCCCEE Q ss_conf 48968999428885479-99999999719980498088889999999998531-01344420013778998412553101 Q gi|254780904|r 12 AKGPVIILVDPQLGENI-GMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHFIYA 89 (268) Q Consensus 12 ~~~~~vVLv~p~~p~Ni-GaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268) -+++.|+.++--. .|+ =|.+.+|.-||+ +++++.|....+.++....+.. +...-....++.+.+++..+.+.+.. T Consensus 3 ~~~l~i~~vGD~~-nnv~~Sli~~~~~~g~-~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt 80 (183) T d1duvg2 3 FNEMTLVYAGDAR-NNMGNSMLEAAALTGL-DLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYT 80 (183) T ss_dssp GGGCEEEEESCTT-SHHHHHHHHHHHHHCC-EEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEE T ss_pred CCCCEEEEECCCC-CHHHHHHHHHHHHCCC-EEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCCEEEE T ss_conf 6787899993782-4899999999998499-7999713676311899999888887518852898422310356887999 Q ss_pred EEC Q ss_conf 201 Q gi|254780904|r 90 TTA 92 (268) Q Consensus 90 ~~~ 92 (268) +.- T Consensus 81 ~~w 83 (183) T d1duvg2 81 DVW 83 (183) T ss_dssp CCS T ss_pred EEH T ss_conf 731 No 12 >d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} Probab=74.36 E-value=2.3 Score=19.16 Aligned_cols=79 Identities=11% Similarity=0.135 Sum_probs=57.7 Q ss_pred CCCCCCEEEEECCCCC-CHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCE Q ss_conf 1348968999428885-479999999997199804980888899999999985310134442001377899841255310 Q gi|254780904|r 10 NSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88 (268) Q Consensus 10 ~~~~~~~vVLv~p~~p-~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~ 88 (268) ..-++..|+.+..-.- .++-+.+.++..||...++++.|....+.++....+... .....++.+.++++.+.+.+. T Consensus 150 g~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~---~~~~~~~~d~~~a~~~aDvvy 226 (310) T d1tuga1 150 GRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEK---GIAWSLHSSIEEVMAEVDILY 226 (310) T ss_dssp SCSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTT---TCCEEEESCGGGTTTTCSEEE T ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHCCCCCCCC---CCEEEEEECHHHHCCCCCEEE T ss_conf 87556638999526667316999999874667669996986126520103332232---203554301665445786565 Q ss_pred EEE Q ss_conf 120 Q gi|254780904|r 89 ATT 91 (268) Q Consensus 89 ~~~ 91 (268) .+. T Consensus 227 ~~~ 229 (310) T d1tuga1 227 MTR 229 (310) T ss_dssp ECC T ss_pred ECC T ss_conf 214 No 13 >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} Probab=66.69 E-value=3.4 Score=18.10 Aligned_cols=75 Identities=19% Similarity=0.153 Sum_probs=54.3 Q ss_pred CCCEEEEECCCCCCHH-HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEE Q ss_conf 8968999428885479-999999997199804980888899999999985310134442001377899841255310120 Q gi|254780904|r 13 KGPVIILVDPQLGENI-GMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATT 91 (268) Q Consensus 13 ~~~~vVLv~p~~p~Ni-GaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~ 91 (268) .+..|..++--.-.|+ -|.+.++..||+ +++++.|....+.++....+.. ......++.++++++.+.+.+..+. T Consensus 3 ~gl~i~~vGD~~~srV~~Sli~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~---~~~~~~~~~d~~~av~~aDvvy~~~ 78 (157) T d1ml4a2 3 DGLKIGLLGDLKYGRTVHSLAEALTFYDV-ELYLISPELLRMPRHIVEELRE---KGMKVVETTTLEDVIGKLDVLYVTR 78 (157) T ss_dssp SSEEEEEESCTTTCHHHHHHHHHGGGSCE-EEEEECCGGGCCCHHHHHHHHH---TTCCEEEESCTHHHHTTCSEEEECC T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCC-CEEEECCCHHHCCHHHHHHHHH---HCCCCEEECCHHHHHCCCCEEEEEC T ss_conf 89999998478667599999999996698-4799716211011677877776---4146414258878524381899643 No 14 >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} Probab=64.10 E-value=3.8 Score=17.79 Aligned_cols=65 Identities=11% Similarity=0.171 Sum_probs=44.9 Q ss_pred CCCEEEEECCCCCCHHH-HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEE Q ss_conf 89689994288854799-99999997199804980888899999999985310134442001377899841255310120 Q gi|254780904|r 13 KGPVIILVDPQLGENIG-MVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATT 91 (268) Q Consensus 13 ~~~~vVLv~p~~p~NiG-aiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~ 91 (268) ++..|.+++--.-+|+. |.+.++.-||++ ++++.|....+++. ...++.++++++.+.+.+..+. T Consensus 2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~-~~i~~P~~~~~~~~-------------~~~~~~~~~ea~~~aDviy~~r 67 (151) T d2at2a2 2 KGLTVSIHGDIKHSRVARSNAEVLTRLGAR-VLFSGPSEWQDEEN-------------TFGTYVSMDEAVESSDVVMLLR 67 (151) T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCC-CCCCCCCHHHCCCC-------------CEEEEEECHHCCCCCCEEEEEE T ss_conf 899999983799897899999999975996-22138713211235-------------3368972001246676035667 No 15 >d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} Probab=60.60 E-value=4.4 Score=17.40 Aligned_cols=76 Identities=12% Similarity=0.133 Sum_probs=51.8 Q ss_pred CCCEEEEECCCCCC-HHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEE Q ss_conf 89689994288854-79999999997199804980888899999999985310134442001377899841255310120 Q gi|254780904|r 13 KGPVIILVDPQLGE-NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATT 91 (268) Q Consensus 13 ~~~~vVLv~p~~p~-NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~ 91 (268) .+..|+.++--.=+ ..-|.+.++..||...++++.|....+.+.....+.. ......++.++++++.+.+.+..+. T Consensus 3 ~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~---~~~~~~~~~d~~~a~~~aDvvy~~~ 79 (160) T d1ekxa2 3 DNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDE---KGIAWSLHSSIEEVMAEVDILYMTR 79 (160) T ss_dssp SSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHH---TTCCEEECSCSTTTGGGCSEEEECC T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHH---HCCCCCCCCCHHHHHCCCCEEEEEC T ss_conf 9999999867886689999999999829972886064012146899999865---2045631169999827685688623 No 16 >d1nxza2 c.116.1.5 (A:74-247) Hypothetical protein HI0303 {Haemophilus influenzae [TaxId: 727]} Probab=54.15 E-value=5.7 Score=16.72 Aligned_cols=143 Identities=13% Similarity=0.081 Sum_probs=81.6 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCC-CC-CCCHH------------HHHHH-HHCCCCCCCHHCCCCHHHH Q ss_conf 8999428885479999999997199804980888-89-99999------------99985-3101344420013778998 Q gi|254780904|r 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DG-WPSEK------------ARSSS-ANADCVIDSVRVFSNLKEA 80 (268) Q Consensus 16 ~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~-~~-~~~~~------------a~~~a-~~a~~~~~~~~~~~~~~~a 80 (268) +-++..+-.+.+.=.+++-|.=.|++.++.+... +. .++.+ +..++ ......+.......+++++ T Consensus 7 i~l~~al~k~~~~~~ilqk~tELGV~~i~p~~s~rs~~~~~~~~~~~k~~r~~~i~~~A~eQsgr~~lP~i~~~~~l~~~ 86 (174) T d1nxza2 7 IHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDW 86 (174) T ss_dssp EEEEEECCSSSCHHHHHHHHHHTTCCEEEEEECTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCCEECCCEEHHHH T ss_pred EEEEEEECCCCHHHHHHHHHHHHCCCEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH T ss_conf 89999512762599999999800803589615764532310667886089999999999873273325531410237788 Q ss_pred HHCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHH Q ss_conf 41255310120112234303412420356665531158816999945888424310001232220476787341016889 Q gi|254780904|r 81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160 (268) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~A 160 (268) +...+.......... .............+++.++.|+|+ |.|.+|++.....=-.|.+=.-..|=.-+| T Consensus 87 l~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~i~iiIGPEG-Gfs~~E~~~~~~~g~~~v~LG~~ILR~ETA 155 (174) T d1nxza2 87 CAENDGALKLNLHPR----------AHYSIKTLPTIPAGGVRLLIGSEG-GLSAQEIAQTEQQGFTEILLGKRVLRTETA 155 (174) T ss_dssp HHCCSSCEEEEECTT----------CSCBGGGCCCCCTTCEEEEECCTT-CCCHHHHHHHHHTTCEEEBCCSSCCCHHHH T ss_pred HHHHCCHHHHHHHHH----------HHHHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHHHHCCCEEEECCCCCCHHHHH T ss_conf 764010144432012----------344554320278874799974776-869899999997798686689981268769 Q ss_pred HHHHHHHHH Q ss_conf 999999999 Q gi|254780904|r 161 VLLMVWECM 169 (268) Q Consensus 161 vaIvlYEl~ 169 (268) +..++--+. T Consensus 156 ~i~als~l~ 164 (174) T d1nxza2 156 SLAAISALQ 164 (174) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 999999999 No 17 >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Probab=51.19 E-value=6.3 Score=16.43 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=46.8 Q ss_pred CCCEEEEECCCCCCH---HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEE Q ss_conf 896899942888547---99999999971998049808888999999999853101344420013778998412553101 Q gi|254780904|r 13 KGPVIILVDPQLGEN---IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYA 89 (268) Q Consensus 13 ~~~~vVLv~p~~p~N---iGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (268) .+..|..++ |..| +-|.+.++.-||+.-.+++.|....+..... ...+ .....+.+.++++.+.+.+.. T Consensus 2 ~gl~i~~vG--D~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~-~~~~-----~~~~~~~d~~eai~~aDvvy~ 73 (153) T d1pg5a2 2 DGLVFALLG--DLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEIL-DELN-----YPVKEVENPFEVINEVDVLYV 73 (153) T ss_dssp TTCEEEEEE--CCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHH-TTCC-----SCEEEESCGGGTGGGCSEEEE T ss_pred CCCEEEEEC--CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHC-CCCC-----CEEEEEECHHHHHHCCCEEEE T ss_conf 999999988--78765899999999998699159982565566421210-2489-----828999589999635986887 Q ss_pred EE Q ss_conf 20 Q gi|254780904|r 90 TT 91 (268) Q Consensus 90 ~~ 91 (268) +. T Consensus 74 ~~ 75 (153) T d1pg5a2 74 TR 75 (153) T ss_dssp EC T ss_pred EE T ss_conf 44 No 18 >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Probab=47.54 E-value=7.2 Score=16.07 Aligned_cols=80 Identities=16% Similarity=0.173 Sum_probs=42.1 Q ss_pred HCCCCCCEEEEECCCCCCHHHH-HHHHHHHCCC-CEEEECCCCCCCCCHHHHHHH---HH-CCCCCCCHHCCCCHHHHHH Q ss_conf 2134896899942888547999-9999997199-804980888899999999985---31-0134442001377899841 Q gi|254780904|r 9 QNSAKGPVIILVDPQLGENIGM-VARAMWNFNL-TQLRLVNPRDGWPSEKARSSS---AN-ADCVIDSVRVFSNLKEAIA 82 (268) Q Consensus 9 ~~~~~~~~vVLv~p~~p~NiGa-iaRa~~~fG~-~~L~lv~P~~~~~~~~a~~~a---~~-a~~~~~~~~~~~~~~~a~~ 82 (268) +...+.+-|..++ .||||+ ++-++...|+ ++|+|++-. .+.+..-+ .| +........+.....+.++ T Consensus 15 ~~~~~~~KV~IIG---aG~VG~~~A~~l~~~~l~~ElvLiD~~----~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~ 87 (160) T d1i0za1 15 EATVPNNKITVVG---VGQVGMACAISILGKSLADELALVDVL----EDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTA 87 (160) T ss_dssp CCCCCSSEEEEEC---CSHHHHHHHHHHHHTTCCSEEEEECSC----HHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGT T ss_pred CCCCCCCEEEEEC---CCHHHHHHHHHHHHCCCCCEEEEEEEC----CCHHHHHHHHHHCCCCCCCCCEEEECCCHHHCC T ss_conf 4457998089989---798999999999855977579998743----515577899886356236898598146544313 Q ss_pred CCCCCEEEECCCC Q ss_conf 2553101201122 Q gi|254780904|r 83 DLHFIYATTARNR 95 (268) Q Consensus 83 ~~~~~~~~~~~~~ 95 (268) +++.++.+.+..+ T Consensus 88 ~adiVVitAg~~~ 100 (160) T d1i0za1 88 NSKIVVVTAGVRQ 100 (160) T ss_dssp TCSEEEECCSCCC T ss_pred CCCEEEEECCCCC T ss_conf 3557998447765 No 19 >d2o3aa1 c.116.1.8 (A:1-167) Uncharacterized protein AF0751 {Archaeoglobus fulgidus [TaxId: 2234]} Probab=38.49 E-value=10 Score=15.20 Aligned_cols=55 Identities=20% Similarity=0.202 Sum_probs=42.5 Q ss_pred HHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 6665531158816999945888424310001232220476787341016889999999999 Q gi|254780904|r 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169 (268) Q Consensus 109 ~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~ 169 (268) .........+.++.+|.|.|. .+.|.-++|||-+.|--.|.-+. .|.||+|-.|+ T Consensus 87 ~~~~~~Ir~~~~ilvVVGaeK--VP~evyelADyNVaVgNQPHSEV----AALAiFLDrl~ 141 (167) T d2o3aa1 87 PQKLEEIKRADKVLVVVGAEK--VPPEVYELCDLNISIGTQPHSEV----AALAVFLDRVL 141 (167) T ss_dssp HHHHHHHHTCSEEEEEEC------CTTHHHHSSEEEESSSSCCCHH----HHHHHHHHHHT T ss_pred HHHHHHCCCCCCEEEEECCCC--CCHHHHHHCCCCEECCCCCCHHH----HHHHHHHHHHH T ss_conf 777643136897799989860--78999843464255078870899----99999999861 No 20 >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Probab=37.44 E-value=10 Score=15.09 Aligned_cols=26 Identities=15% Similarity=0.150 Sum_probs=19.1 Q ss_pred CCHHHHH-HHHHHHCCCCEEEECCCCC Q ss_conf 5479999-9999971998049808888 Q gi|254780904|r 25 GENIGMV-ARAMWNFNLTQLRLVNPRD 50 (268) Q Consensus 25 p~NiGai-aRa~~~fG~~~L~lv~P~~ 50 (268) .|+||+. |-++..-++.+++|++... T Consensus 9 aG~VG~~~A~~l~~~~l~dl~l~D~~~ 35 (142) T d1uxja1 9 AGFVGSTTAHWLAAKELGDIVLLDIVE 35 (142) T ss_dssp CSHHHHHHHHHHHHHTCSEEEEECSSS T ss_pred CCHHHHHHHHHHHHCCCCEEEEEEECC T ss_conf 798999999999847835089885026 No 21 >d2qwva1 c.116.1.7 (A:5-205) Uncharacterized protein VCA1059 {Vibrio cholerae [TaxId: 666]} Probab=36.77 E-value=11 Score=15.03 Aligned_cols=53 Identities=23% Similarity=0.083 Sum_probs=39.5 Q ss_pred HHCCCCCEEEEEECCCCCCCCCCCCCCCC----EEECCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 31158816999945888424310001232----22047678734101688999999999996 Q gi|254780904|r 114 RIFSGQNVGIIFGRERWGLTNEEIALSNA----IISFPVNPLFPSLNISQAVLLMVWECMEN 171 (268) Q Consensus 114 ~~~~~~~valVFG~E~~GLs~eel~~cd~----~v~IPt~~~~~SLNLS~AvaIvlYEl~r~ 171 (268) ......+.++|+| -..|++.+|.+.-.. .+++ .-.+|=-+|+++|+-|++=++ T Consensus 141 ~~~~~~~~~FILs-Dh~~~~~~e~~~L~~~g~~~iSL----Gp~~L~ashcI~ivH~~LDr~ 197 (201) T d2qwva1 141 DIKIGPNPCFILT-DHIPMPKKSGNSMKRLGVEKISL----GPKMLFASQCVTLIHNEIDHQ 197 (201) T ss_dssp TSCCCSSEEEEEC-C----------CTTTTTCEEEEC----CSSCCCHHHHHHHHHHHHHHH T ss_pred HCCCCCCCEEEEE-CCCCCCHHHHHHHHHCCCEEEEE----CCHHHHHHHHHHHHHHHHHHH T ss_conf 3668899879970-89998978999887528704765----607887758999999986200 No 22 >d1vhka2 c.116.1.5 (A:74-253) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]} Probab=36.05 E-value=11 Score=14.95 Aligned_cols=120 Identities=12% Similarity=0.134 Sum_probs=66.4 Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCC-------C---HHH----HHHH-HHCCCCCCCHHCCCCHHHHHH Q ss_conf 994288854799999999971998049808888999-------9---999----9985-310134442001377899841 Q gi|254780904|r 18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-------S---EKA----RSSS-ANADCVIDSVRVFSNLKEAIA 82 (268) Q Consensus 18 VLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~-------~---~~a----~~~a-~~a~~~~~~~~~~~~~~~a~~ 82 (268) +....--+...-.+++-+.=.|++.++.+...-... . ++. ..++ ......+.......++.++++ T Consensus 10 L~~~l~K~~~~~~ilqk~tELGV~~i~p~~s~rs~~~~~~~~~~~~~~r~~~i~~eA~eQsgr~~lP~i~~~~~l~~~l~ 89 (180) T d1vhka2 10 IASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQQLLQ 89 (180) T ss_dssp EEEECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEECCCBCHHHHHH T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH T ss_conf 99940376469999999983181558850035653223411456559999999999998643666543536788999997 Q ss_pred CCCCCEEEEC-CCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC Q ss_conf 2553101201-1223430341242035666553115881699994588842431000123 Q gi|254780904|r 83 DLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141 (268) Q Consensus 83 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd 141 (268) .......... ....... ................+++.++.|+|+ |.|.+|++... T Consensus 90 ~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~ 145 (180) T d1vhka2 90 RMQDFDKCVVAYEESSKQ---GEISAFSAIVSSLPKGSSLLIVFGPEG-GLTEAEVERLT 145 (180) T ss_dssp HGGGSSEEEEECC-----------CHHHHHHHTCCTTCEEEEEECCTT-CCCHHHHHHHH T ss_pred HCCCCCCEEEEECCCCCC---CCHHHHHHHHHCCCCCCEEEEEECCCC-CCCHHHHHHHH T ss_conf 553444189870333444---324678888750577870899966888-98999999999 No 23 >d2qmma1 c.116.1.7 (A:95-288) Uncharacterized protein AF1056 {Archaeoglobus fulgidus [TaxId: 2234]} Probab=35.62 E-value=11 Score=14.91 Aligned_cols=55 Identities=18% Similarity=0.104 Sum_probs=39.0 Q ss_pred HHCCCCCEEEEEECCCCCCCCCCCCCCCCEE--ECCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 3115881699994588842431000123222--047678734101688999999999996 Q gi|254780904|r 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAII--SFPVNPLFPSLNISQAVLLMVWECMEN 171 (268) Q Consensus 114 ~~~~~~~valVFG~E~~GLs~eel~~cd~~v--~IPt~~~~~SLNLS~AvaIvlYEl~r~ 171 (268) ........++|+| -..|++.++.+.-..+- .|-. .-.+|=-+|+++|+-|++=|. T Consensus 136 ~~~~~~~~~FILs-Dh~~l~~~e~~~L~~~~~~~iSL--Gp~~L~a~hcI~ivh~~LDr~ 192 (194) T d2qmma1 136 NAQLPPNPLFVIG-DHEGLTEEQEKVVERYAALKLSL--SPLSLLAEQCVVIAHHHLDRL 192 (194) T ss_dssp GSCCCSSEEEEEE-CTTCCCHHHHHHHHTTCSEEEEC--CSSCCCHHHHHHHHHHHHHHH T ss_pred CCCCCCCCEEEEE-CCCCCCHHHHHHHHHCCCEEEEC--CCCCCCHHHHHHHHHHHHHHC T ss_conf 2336999869975-89998867888776427714753--654225346696999988650 No 24 >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Probab=34.38 E-value=11 Score=14.85 Aligned_cols=24 Identities=8% Similarity=0.178 Sum_probs=16.0 Q ss_pred CCHHHHHH-HHHHHCC-CCEEEECCC Q ss_conf 54799999-9999719-980498088 Q gi|254780904|r 25 GENIGMVA-RAMWNFN-LTQLRLVNP 48 (268) Q Consensus 25 p~NiGaia-Ra~~~fG-~~~L~lv~P 48 (268) .||||+.+ =.+..-| +++|+|++. T Consensus 9 aG~VG~~~a~~l~~~~~~~elvL~Di 34 (146) T d1hyha1 9 LGNVGAAVAHGLIAQGVADDYVFIDA 34 (146) T ss_dssp CSHHHHHHHHHHHHHTCCSEEEEECS T ss_pred CCHHHHHHHHHHHHCCCCCEEEEEEC T ss_conf 68889999999996588866999840 No 25 >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Probab=33.75 E-value=12 Score=14.72 Aligned_cols=80 Identities=16% Similarity=0.139 Sum_probs=44.3 Q ss_pred CCCCEEEEECCCCCCHHHHH-HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCC---CCCCCHHCCCCHHHHHHCCCCC Q ss_conf 48968999428885479999-9999971998049808888999999999853101---3444200137789984125531 Q gi|254780904|r 12 AKGPVIILVDPQLGENIGMV-ARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD---CVIDSVRVFSNLKEAIADLHFI 87 (268) Q Consensus 12 ~~~~~vVLv~p~~p~NiGai-aRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~---~~~~~~~~~~~~~~a~~~~~~~ 87 (268) ++.+-|..++ .|+||+. +-+++..|+.+++|++...+.....+.-. .++. ............++++++++.+ T Consensus 5 ~k~~KI~IIG---aG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl-~~~~~~~~~~~~~~~~~~~~~~~~~adiV 80 (154) T d1pzga1 5 QRRKKVAMIG---SGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDL-SHVTSVVDTNVSVRAEYSYEAALTGADCV 80 (154) T ss_dssp SCCCEEEEEC---CSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHH-HHHHHHTTCCCCEEEECSHHHHHTTCSEE T ss_pred CCCCCEEEEC---CCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH-HHHCCCCCCEEEEECCCCHHHHHCCCCEE T ss_conf 5788489989---8888999999998379863999974166204699987-50111258746995267466664478768 Q ss_pred EEEECCCC Q ss_conf 01201122 Q gi|254780904|r 88 YATTARNR 95 (268) Q Consensus 88 ~~~~~~~~ 95 (268) +.+.+..+ T Consensus 81 vitag~~~ 88 (154) T d1pzga1 81 IVTAGLTK 88 (154) T ss_dssp EECCSCSS T ss_pred EEECCCCC T ss_conf 97515446 No 26 >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Probab=31.73 E-value=13 Score=14.52 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=36.4 Q ss_pred CCCHHH-HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEECC Q ss_conf 854799-9999999719980498088889999999998531013444200137789984125531012011 Q gi|254780904|r 24 LGENIG-MVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTAR 93 (268) Q Consensus 24 ~p~NiG-aiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 93 (268) .-|||| .++|.+++||+. ++..+|.... ... ... ......++++.++.++.+...... T Consensus 56 G~G~IG~~va~~l~~fg~~-v~~~d~~~~~-~~~---~~~-------~~~~~~~l~~ll~~sD~i~~~~pl 114 (193) T d1mx3a1 56 GLGRVGQAVALRAKAFGFN-VLFYDPYLSD-GVE---RAL-------GLQRVSTLQDLLFHSDCVTLHCGL 114 (193) T ss_dssp CCSHHHHHHHHHHHTTTCE-EEEECTTSCT-THH---HHH-------TCEECSSHHHHHHHCSEEEECCCC T ss_pred CCCCCCCCCEEEEECCCCC-EEECCCCCCC-CCH---HHH-------CCCCCCCHHHCCCCCCEEEEEECC T ss_conf 3433553110000002321-0212673111-102---331-------540135365525567789984011 No 27 >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Probab=30.66 E-value=13 Score=14.40 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=17.8 Q ss_pred CCHHHHH-HHHHHHCC-CCEEEECCCC Q ss_conf 5479999-99999719-9804980888 Q gi|254780904|r 25 GENIGMV-ARAMWNFN-LTQLRLVNPR 49 (268) Q Consensus 25 p~NiGai-aRa~~~fG-~~~L~lv~P~ 49 (268) .|+||+. +-.+...| +++|.|++-. T Consensus 8 aG~VG~~la~~l~~~~l~~el~L~Di~ 34 (142) T d1guza1 8 AGNVGATTAFRLAEKQLARELVLLDVV 34 (142) T ss_dssp CSHHHHHHHHHHHHTTCCSEEEEECSS T ss_pred CCHHHHHHHHHHHHCCCCCEEEEECCC T ss_conf 698999999999847977369984265 No 28 >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Probab=29.80 E-value=14 Score=14.31 Aligned_cols=65 Identities=6% Similarity=0.124 Sum_probs=31.0 Q ss_pred CCHHHHHH-HHHHHCCC-CEEEECCCCCCCCCHHHHHHHHH---CCCCCCCHHCCCCHHHHHHCCCCCEEEECC Q ss_conf 54799999-99997199-80498088889999999998531---013444200137789984125531012011 Q gi|254780904|r 25 GENIGMVA-RAMWNFNL-TQLRLVNPRDGWPSEKARSSSAN---ADCVIDSVRVFSNLKEAIADLHFIYATTAR 93 (268) Q Consensus 25 p~NiGaia-Ra~~~fG~-~~L~lv~P~~~~~~~~a~~~a~~---a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 93 (268) .||||+.+ -++..-|+ ++|+|++-. .+++...+.. +........+.....+++++++.++.+.+. T Consensus 8 aG~VG~~~a~~l~~~~l~~el~L~Di~----~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~ 77 (140) T d1a5za1 8 LGRVGSSTAFALLMKGFAREMVLIDVD----KKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGV 77 (140) T ss_dssp CSHHHHHHHHHHHHHTCCSEEEEECSS----HHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCC T ss_pred CCHHHHHHHHHHHHCCCCCEEEEEECC----CCCCCCHHCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCC T ss_conf 698899999999857998779999545----4434102200102466045662127708874579889984245 No 29 >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Probab=27.72 E-value=15 Score=14.08 Aligned_cols=67 Identities=12% Similarity=0.051 Sum_probs=33.4 Q ss_pred CCHHHHHH-HHHHHCCC-CEEEECCCCCCCCCHHHHHHH---HHC-CCCCCCHHCCCCHHHHHHCCCCCEEEECCCC Q ss_conf 54799999-99997199-804980888899999999985---310-1344420013778998412553101201122 Q gi|254780904|r 25 GENIGMVA-RAMWNFNL-TQLRLVNPRDGWPSEKARSSS---ANA-DCVIDSVRVFSNLKEAIADLHFIYATTARNR 95 (268) Q Consensus 25 p~NiGaia-Ra~~~fG~-~~L~lv~P~~~~~~~~a~~~a---~~a-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 95 (268) .||||+.+ =++..-|+ ++|+|++-. ..++...+ .|+ .+............+++++++.++.+.+..+ T Consensus 9 aG~VG~~~a~~l~~~~l~~ElvL~D~~----~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~~~ 81 (143) T d1llda1 9 AGAVGSTLAFAAAQRGIAREIVLEDIA----KERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPRQ 81 (143) T ss_dssp CSHHHHHHHHHHHHTTCCSEEEEECSS----HHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCCC T ss_pred CCHHHHHHHHHHHHCCCCCEEEEEEEC----CCCCHHHHHHHHHCCCCCCCCEEECCCCHHHHHCCCEEEEECCCCC T ss_conf 798899999999844878589999731----5531047777774223389851544789889517748999633656 No 30 >d1e8ca2 c.59.1.1 (A:338-497) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Probab=26.03 E-value=16 Score=13.89 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=31.6 Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECC Q ss_conf 13489689994288854799999999971998049808 Q gi|254780904|r 10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN 47 (268) Q Consensus 10 ~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~ 47 (268) ...++|.||+|--..|.-+-+++.+.+.+....+++|- T Consensus 9 ~~~~~p~VIvDyAHNp~ai~~l~~~~k~~~~~~~~~V~ 46 (160) T d1e8ca2 9 TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVF 46 (160) T ss_dssp CCTTSCEEEEECCCSHHHHHHHHHHHHHTCSSCEEEEE T ss_pred ECCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE T ss_conf 65899889997899999999999986541345543244 No 31 >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Probab=25.21 E-value=17 Score=13.80 Aligned_cols=87 Identities=13% Similarity=0.176 Sum_probs=49.1 Q ss_pred CCCEEEEECCC-CCCHHHH-HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEE Q ss_conf 89689994288-8547999-999999719980498088889999999998531013444200137789984125531012 Q gi|254780904|r 13 KGPVIILVDPQ-LGENIGM-VARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYAT 90 (268) Q Consensus 13 ~~~~vVLv~p~-~p~NiGa-iaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~ 90 (268) +.-.|+++..+ +|++.|. ++|.+...|-..++.|||+.. .+.....|.++.+.-...+.++.+ T Consensus 7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~---------------~i~G~~~y~sl~dlp~~vDlvvi~ 71 (129) T d2csua1 7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEE---------------EVQGVKAYKSVKDIPDEIDLAIIV 71 (129) T ss_dssp SCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCS---------------EETTEECBSSTTSCSSCCSEEEEC T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCC---------------CCCCEEEECCHHHCCCCCCEEEEE T ss_conf 99859998347999870899999999749970899626762---------------308848665353357788667884 Q ss_pred ECCCCCCCEEEECCCCHHHHHHHH-HCCCCCEEEEEE Q ss_conf 011223430341242035666553-115881699994 Q gi|254780904|r 91 TARNRNNFKSVLAPKEAAIVLNER-IFSGQNVGIIFG 126 (268) Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~valVFG 126 (268) . +.......... ...+-+.+++|. T Consensus 72 v------------p~~~~~~~~~~~~~~g~~~~vi~s 96 (129) T d2csua1 72 V------------PKRFVKDTLIQCGEKGVKGVVIIT 96 (129) T ss_dssp S------------CHHHHHHHHHHHHHHTCCEEEECC T ss_pred C------------CHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 4------------867708889999973998898713 No 32 >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Probab=24.44 E-value=17 Score=13.71 Aligned_cols=62 Identities=19% Similarity=0.191 Sum_probs=37.7 Q ss_pred EEEEECCCCCCHHHH-HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEECC Q ss_conf 899942888547999-999999719980498088889999999998531013444200137789984125531012011 Q gi|254780904|r 16 VIILVDPQLGENIGM-VARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTAR 93 (268) Q Consensus 16 ~vVLv~p~~p~NiGa-iaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 93 (268) .|..+. -|+||. ++|-+.+||+ +++..+|.. .+..... . ...+.+++++++.++.+...... T Consensus 46 ~vgiiG---~G~IG~~va~~~~~fg~-~v~~~d~~~---~~~~~~~-~--------~~~~~~l~ell~~sDiv~~~~Pl 108 (184) T d1ygya1 46 TVGVVG---LGRIGQLVAQRIAAFGA-YVVAYDPYV---SPARAAQ-L--------GIELLSLDDLLARADFISVHLPK 108 (184) T ss_dssp EEEEEC---CSHHHHHHHHHHHTTTC-EEEEECTTS---CHHHHHH-H--------TCEECCHHHHHHHCSEEEECCCC T ss_pred EEEECC---CCCHHHHHHHHHHHCCC-EEEEECCCC---CHHHHHH-C--------CCEECCHHHHHHHCCEEEECCCC T ss_conf 454203---53115788887640552-377406888---8667753-4--------84452589998559999973799 No 33 >d1v6za2 c.116.1.5 (A:67-228) Hypothetical protein TTHA0657 (TT1575) {Thermus thermophilus [TaxId: 274]} Probab=21.14 E-value=20 Score=13.30 Aligned_cols=136 Identities=21% Similarity=0.167 Sum_probs=69.6 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEECC-CCCC--CCCH----HHHHHHHH-----CCCCCCCHHCCCCHHHHHHC Q ss_conf 89994288854799999999971998049808-8889--9999----99998531-----01344420013778998412 Q gi|254780904|r 16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDG--WPSE----KARSSSAN-----ADCVIDSVRVFSNLKEAIAD 83 (268) Q Consensus 16 ~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~-P~~~--~~~~----~a~~~a~~-----a~~~~~~~~~~~~~~~a~~~ 83 (268) +.+....--+.+.-.+++-|.-.|++.++.+. -++. ..+. +-.+.+.. ....+.......++.++... T Consensus 7 i~L~~~l~K~~~~~~il~k~tELGV~~i~p~~sers~~k~~~~~k~~r~~~i~~~A~~Qs~r~~lP~i~~~~~l~~~~~~ 86 (162) T d1v6za2 7 VVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQV 86 (162) T ss_dssp EEEEEECCSTTHHHHHHHHHHHTTCSEEEEEECTTCSCSCCCHHHHHHHHHHHHHHHHHTTCSSCCEECCCEEGGGCCCC T ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH T ss_conf 89999314740899999999952818799997346302220213323779999999885144578710256588997552 Q ss_pred CCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHH Q ss_conf 55310120112234303412420356665531158816999945888424310001232220476787341016889999 Q gi|254780904|r 84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163 (268) Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaI 163 (268) ...... ..... ..........+++.++.|+|+ |.|.+|++.....--.+.+=.-..|=.-+|+-. T Consensus 87 ~~~~~~-------------~~~~~-~~~~~~~~~~~~i~i~IGPEG-Gfs~~Ei~~l~~~g~~~v~LG~~ILR~ETA~i~ 151 (162) T d1v6za2 87 AQGLVA-------------HVGAT-ARVREVLDPEKPLALAVGPEG-GFAEEEVALLEARGFTPVSLGRRILRAETAALA 151 (162) T ss_dssp SSEEEE-------------CTTCC-CCHHHHCCTTSCEEEEECCTT-CCCHHHHHHHHHHTEEEECCCSSCCCHHHHHHH T ss_pred CCHHHC-------------CCCCC-CCCHHHHCCCCCCEEEEECCC-CCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHH T ss_conf 000001-------------22321-000010103676169982667-878999999998798898779982278859999 Q ss_pred HHH Q ss_conf 999 Q gi|254780904|r 164 MVW 166 (268) Q Consensus 164 vlY 166 (268) ++- T Consensus 152 als 154 (162) T d1v6za2 152 LLA 154 (162) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 34 >d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Probab=20.69 E-value=20 Score=13.24 Aligned_cols=37 Identities=16% Similarity=-0.028 Sum_probs=30.3 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 9999999863169998999999999999998410342 Q gi|254780904|r 218 MLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254 (268) Q Consensus 218 ~~~~lrrl~~R~~l~~~E~~~L~Gil~~l~~~~~~~~ 254 (268) -...||..|+|..++.+|+-.|-|-.+.......... T Consensus 171 ~a~~lrd~f~rMGl~d~E~VAL~Ggh~~g~~~~~~sg 207 (285) T d2ccaa2 171 AEYMLLDKANLLTLSAPEMTVLVGGLRVLGANYKRLP 207 (285) T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCSGGGCC T ss_pred HHHHHHHHHHHCCCCHHHHHEEECCCCHHHCCCCCCC T ss_conf 1889999999705424534103345105330345211 No 35 >d1alla_ a.1.1.3 (A:) Allophycocyanin alpha subunit {Spirulina platensis [TaxId: 118562]} Probab=20.48 E-value=21 Score=13.21 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=23.8 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 7873410168899999999999621366544433333468888999999999999 Q gi|254780904|r 149 NPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISL 203 (268) Q Consensus 149 ~~~~~SLNLS~AvaIvlYEl~r~~~~~~~~~~~~~~~~a~~~~l~~~~~~l~~~l 203 (268) ..-|.|||++.+..|..++.+|..-... -.+....++...++|+...| T Consensus 112 re~y~al~vp~~~~v~al~~mk~~~~~~-------ls~~~~~~~~~yfD~lI~~l 159 (160) T d1alla_ 112 REMYKSLGTPIEAIAEGVRAMKSVATSL-------LSGADAAEAGSYFDYLIGAM 159 (160) T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHHTT-------SCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHHHHHHC T ss_conf 9999985999799999999999999976-------79999999888999999873 No 36 >d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} Probab=20.32 E-value=21 Score=13.19 Aligned_cols=36 Identities=17% Similarity=0.288 Sum_probs=24.6 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCC Q ss_conf 8968999428885479999999997199804980888 Q gi|254780904|r 13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR 49 (268) Q Consensus 13 ~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~ 49 (268) +.+.|.++. -.-||+++++|+...+|++-.++-++. T Consensus 3 ~m~~I~IiD-yg~gN~~Sv~~al~~lG~~~~ii~~~~ 38 (232) T d1jvna2 3 HMPVVHVID-VESGNLQSLTNAIEHLGYEVQLVKSPK 38 (232) T ss_dssp SSCEEEEEC-CSCSCCHHHHHHHHHTTCEEEEESSGG T ss_pred CCCEEEEEE-CCCCHHHHHHHHHHHCCCCEEEEECCC T ss_conf 899999997-898689999999998699769998842 Done!