Query         gi|254780904|ref|YP_003065317.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 268
No_of_seqs    177 out of 3436
Neff          7.7 
Searched_HMMs 13730
Date          Wed Jun  1 10:46:14 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780904.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1gz0a1 c.116.1.1 (A:78-243) R 100.0 3.4E-35 2.5E-39  238.4  13.0  153    9-172    13-165 (166)
  2 d1ipaa1 c.116.1.1 (A:106-263)  100.0 2.8E-34 2.1E-38  232.6  12.2  155    6-173     3-157 (158)
  3 d1v2xa_ c.116.1.1 (A:) tRNA (G 100.0 3.3E-34 2.4E-38  232.1  10.8  175    9-199    17-191 (191)
  4 d1mxia_ c.116.1.1 (A:) Hypothe 100.0 1.5E-31 1.1E-35  215.4  12.8  149   15-176     2-152 (156)
  5 d1pvva2 c.78.1.1 (A:151-313) O  91.7    0.37 2.7E-05   24.2   8.1   78   12-92      2-81  (163)
  6 d1dxha2 c.78.1.1 (A:151-335) O  88.9    0.62 4.5E-05   22.8   6.3   78   12-92      3-83  (185)
  7 d1otha2 c.78.1.1 (A:185-354) O  87.4     0.8 5.8E-05   22.1   6.2   78   12-92      2-81  (170)
  8 d1vlva2 c.78.1.1 (A:153-313) O  83.0     1.3 9.3E-05   20.8   7.3   79   13-92      2-81  (161)
  9 d1k3ra2 c.116.1.2 (A:1-92,A:16  80.2     1.6 0.00012   20.2   8.9  135   19-167    15-185 (191)
 10 d1js1x2 c.78.1.1 (X:164-324) T  77.4     1.9 0.00014   19.7   6.0   54   25-89     18-72  (161)
 11 d1duvg2 c.78.1.1 (G:151-333) O  75.1     2.2 0.00016   19.3   6.6   79   12-92      3-83  (183)
 12 d1tuga1 c.78.1.1 (A:1-150,A:15  74.4     2.3 0.00017   19.2   6.6   79   10-91    150-229 (310)
 13 d1ml4a2 c.78.1.1 (A:152-308) A  66.7     3.4 0.00025   18.1   6.1   75   13-91      3-78  (157)
 14 d2at2a2 c.78.1.1 (A:145-295) A  64.1     3.8 0.00028   17.8   4.4   65   13-91      2-67  (151)
 15 d1ekxa2 c.78.1.1 (A:151-310) A  60.6     4.4 0.00032   17.4   5.7   76   13-91      3-79  (160)
 16 d1nxza2 c.116.1.5 (A:74-247) H  54.1     5.7 0.00041   16.7  11.7  143   16-169     7-164 (174)
 17 d1pg5a2 c.78.1.1 (A:147-299) A  51.2     6.3 0.00046   16.4   5.0   71   13-91      2-75  (153)
 18 d1i0za1 c.2.1.5 (A:1-160) Lact  47.5     7.2 0.00053   16.1   5.4   80    9-95     15-100 (160)
 19 d2o3aa1 c.116.1.8 (A:1-167) Un  38.5      10 0.00072   15.2   7.5   55  109-169    87-141 (167)
 20 d1uxja1 c.2.1.5 (A:2-143) Mala  37.4      10 0.00075   15.1   3.4   26   25-50      9-35  (142)
 21 d2qwva1 c.116.1.7 (A:5-205) Un  36.8      11 0.00077   15.0   3.8   53  114-171   141-197 (201)
 22 d1vhka2 c.116.1.5 (A:74-253) H  36.0      11 0.00079   15.0  10.2  120   18-141    10-145 (180)
 23 d2qmma1 c.116.1.7 (A:95-288) U  35.6      11  0.0008   14.9   3.9   55  114-171   136-192 (194)
 24 d1hyha1 c.2.1.5 (A:21-166) L-2  34.4      11 0.00082   14.8   2.3   24   25-48      9-34  (146)
 25 d1pzga1 c.2.1.5 (A:14-163) Lac  33.8      12 0.00086   14.7   6.5   80   12-95      5-88  (154)
 26 d1mx3a1 c.2.1.4 (A:126-318) Tr  31.7      13 0.00093   14.5   5.0   58   24-93     56-114 (193)
 27 d1guza1 c.2.1.5 (A:1-142) Mala  30.7      13 0.00097   14.4   2.8   25   25-49      8-34  (142)
 28 d1a5za1 c.2.1.5 (A:22-163) Lac  29.8      14   0.001   14.3   2.4   65   25-93      8-77  (140)
 29 d1llda1 c.2.1.5 (A:7-149) Lact  27.7      15  0.0011   14.1   2.2   67   25-95      9-81  (143)
 30 d1e8ca2 c.59.1.1 (A:338-497) U  26.0      16  0.0012   13.9   5.6   38   10-47      9-46  (160)
 31 d2csua1 c.2.1.8 (A:1-129) Acet  25.2      17  0.0012   13.8   4.6   87   13-126     7-96  (129)
 32 d1ygya1 c.2.1.4 (A:99-282) Pho  24.4      17  0.0012   13.7   3.2   62   16-93     46-108 (184)
 33 d1v6za2 c.116.1.5 (A:67-228) H  21.1      20  0.0015   13.3   9.0  136   16-166     7-154 (162)
 34 d2ccaa2 a.93.1.3 (A:436-720) C  20.7      20  0.0015   13.2   3.3   37  218-254   171-207 (285)
 35 d1alla_ a.1.1.3 (A:) Allophyco  20.5      21  0.0015   13.2   2.9   48  149-203   112-159 (160)
 36 d1jvna2 c.23.16.1 (A:-3-229) G  20.3      21  0.0015   13.2   3.6   36   13-49      3-38  (232)

No 1  
>d1gz0a1 c.116.1.1 (A:78-243) RlmB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=3.4e-35  Score=238.40  Aligned_cols=153  Identities=16%  Similarity=0.124  Sum_probs=123.2

Q ss_pred             HCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCE
Q ss_conf             21348968999428885479999999997199804980888899999999985310134442001377899841255310
Q gi|254780904|r    9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY   88 (268)
Q Consensus         9 ~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~   88 (268)
                      ....+..+|||+++++|+|+|+|+|+|++||++.++++.++++++++++.+.|+|+.+.+... .+.++.++++.+....
T Consensus        13 ~~~~~~~~vvLd~i~~p~N~GaiiRta~afG~~~v~~~~~~~~~~~~~~~r~s~g~~~~v~~~-~~~~~~~~l~~~~~~~   91 (166)
T d1gz0a1          13 ASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLI-RVTNLARTMRMLQEEN   91 (166)
T ss_dssp             HTCSSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESSSSCCCCHHHHHHHTTHHHHSCEE-EESCHHHHHHHHHHTT
T ss_pred             HCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHEECCCCCEEECEE-ECCCHHHHHHHHCCCC
T ss_conf             466898799995788865599999999852886465402543110012312313750376506-6399999998701243


Q ss_pred             EEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             12011223430341242035666553115881699994588842431000123222047678734101688999999999
Q gi|254780904|r   89 ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC  168 (268)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl  168 (268)
                      ..         .... ..............++++||||+|++|||+++++.||..++|||.+.++|||||+|++|+|||+
T Consensus        92 ~~---------~~~~-~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v~IPm~~~~~SLNvs~A~~I~lye~  161 (166)
T d1gz0a1          92 IW---------IVGT-AGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEA  161 (166)
T ss_dssp             CE---------EEEE-CTTCSEEGGGSCCCSSEEEEEEBTTTBSCHHHHHTCSEEEECCCSSSSCCCCHHHHHHHHHHHH
T ss_pred             CC---------CCCC-CCCCCCCHHHHHCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCCEEHHHHHHHHHHHH
T ss_conf             21---------1123-4544454788514687389966676787799998689899970968997546999999999999


Q ss_pred             HHHH
Q ss_conf             9962
Q gi|254780904|r  169 MENS  172 (268)
Q Consensus       169 ~r~~  172 (268)
                      +||.
T Consensus       162 ~rqr  165 (166)
T d1gz0a1         162 VRQR  165 (166)
T ss_dssp             HHHT
T ss_pred             HHCC
T ss_conf             9755


No 2  
>d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=2.8e-34  Score=232.59  Aligned_cols=155  Identities=17%  Similarity=0.173  Sum_probs=115.8

Q ss_pred             HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCC
Q ss_conf             55321348968999428885479999999997199804980888899999999985310134442001377899841255
Q gi|254780904|r    6 PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH   85 (268)
Q Consensus         6 ~~l~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~   85 (268)
                      ++......+.+|||+++++|+|+|||+|+|++||++.++++++ +++.++++.+.++|+.+......  ....+++..+.
T Consensus         3 e~~~~~~~~~~lvld~i~dP~NlGai~Rta~~fG~~~v~~~~~-~~~~~~~~~r~s~g~~~~~~~~~--~~~~~~~~~~~   79 (158)
T d1ipaa1           3 EEYRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGG-VDLYSPQVIRNSTGVVFSLRTLA--ASESEVLDWIK   79 (158)
T ss_dssp             CCCCCCTTCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESC-CCTTCHHHHHHTTTGGGTSCEEE--ECHHHHHHHHH
T ss_pred             HHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHCCC-CCCCCHHHHEECCCCEEEECCCC--CCHHHHHHHHH
T ss_conf             4407799988999968978753899999998602401222056-44333346201124022311001--13699999998


Q ss_pred             CCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf             31012011223430341242035666553115881699994588842431000123222047678734101688999999
Q gi|254780904|r   86 FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV  165 (268)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvl  165 (268)
                              .... ....... ............++++||||+|++|||+++++.||..++|||.+.++|||||+|++|+|
T Consensus        80 --------~~~~-~i~~~~~-~~~~~~~~~~~~~~~~lvfG~E~~Gls~~~l~~~d~~v~IP~~g~~~SLNvs~A~aI~l  149 (158)
T d1ipaa1          80 --------QHNL-PLVATTP-HAEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQADSLNVSVSAALLL  149 (158)
T ss_dssp             --------HTTC-CEEEECT-TCSSBGGGSCCCSSEEEEECCTTSCCCHHHHHHCSEEEBCCCCSSCCCCCHHHHHHHHH
T ss_pred             --------HHCC-CCCCCCC-CCCCCCHHCCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHH
T ss_conf             --------6213-4322222-22221000024766289974555666799998488799976899997376999999999


Q ss_pred             HHHHHHHC
Q ss_conf             99999621
Q gi|254780904|r  166 WECMENSI  173 (268)
Q Consensus       166 YEl~r~~~  173 (268)
                      ||++||+.
T Consensus       150 yE~~RQr~  157 (158)
T d1ipaa1         150 YEALRQRL  157 (158)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHC
T ss_conf             99997533


No 3  
>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=3.3e-34  Score=232.14  Aligned_cols=175  Identities=19%  Similarity=0.267  Sum_probs=123.3

Q ss_pred             HCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCE
Q ss_conf             21348968999428885479999999997199804980888899999999985310134442001377899841255310
Q gi|254780904|r    9 QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY   88 (268)
Q Consensus         9 ~~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~   88 (268)
                      ...+...+|||+++++|+|||+|+|+|++||++++++++|.+++++..  +.++++ ........+.+..+++..+... 
T Consensus        17 ~~~~~~~~vvLd~i~~p~NiG~IiRta~afG~~~v~l~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~l~~l~~~-   92 (191)
T d1v2xa_          17 RRRQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPTFN--ETSGGS-HKWVYLRVHPDLHEAFRFLKER-   92 (191)
T ss_dssp             TTCBTTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGGSCCCC--SSCSSG-GGTSEEEEESSHHHHHHHHHHT-
T ss_pred             HCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE--ECCHHH-HEEECCCCCCHHHHHHHHHHHC-
T ss_conf             657999799995798875489999999851223201248864530110--000112-0120122233025678888636-


Q ss_pred             EEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             12011223430341242035666553115881699994588842431000123222047678734101688999999999
Q gi|254780904|r   89 ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC  168 (268)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl  168 (268)
                              ....................+.++++||||+|+.|||+++++.||..|+|||.+.++|||||+|++|+|||+
T Consensus        93 --------~~~i~~~~~~~~~~~~~~~~~~~~~~lV~G~E~~Gls~~~l~~~d~~v~IPm~~~~~SLNvsvAa~I~lyE~  164 (191)
T d1v2xa_          93 --------GFTVYATALREDARDFREVDYTKPTAVLFGAEKWGVSEEALALADGAIKIPMLGMVQSLNVSVAAAVILFEA  164 (191)
T ss_dssp             --------TCEEEEECCCTTSEEGGGSCTTSSEEEEECBTTTBSCHHHHHHSSEEEECCCCSSCSCCCHHHHHHHHHHHH
T ss_pred             --------CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf             --------874211111122332211247888089973666536599998378679968999966332999999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9962136654443333346888899999999
Q gi|254780904|r  169 MENSIVSSEKNVKEQNTPATKGELLSFLDYL  199 (268)
Q Consensus       169 ~r~~~~~~~~~~~~~~~~a~~~~l~~~~~~l  199 (268)
                      +||.........    +....++++.+++.|
T Consensus       165 ~rq~~~~g~~~~----~~~~~~~~~~l~~~~  191 (191)
T d1v2xa_         165 QRQRLKAGLYDR----PRLDPELYQKVLADW  191 (191)
T ss_dssp             HHHHHHHTGGGS----CCSCHHHHHHHHHHC
T ss_pred             HHHHHHCCCCCC----CCCCHHHHHHHHHCC
T ss_conf             999986568887----789999999998349


No 4  
>d1mxia_ c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue) {Haemophilus influenzae [TaxId: 727]}
Probab=99.97  E-value=1.5e-31  Score=215.40  Aligned_cols=149  Identities=16%  Similarity=0.154  Sum_probs=108.4

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEECCC
Q ss_conf             68999428885479999999997199804980888899999999985310134442001377899841255310120112
Q gi|254780904|r   15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN   94 (268)
Q Consensus        15 ~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   94 (268)
                      +.||||+|++|+|||+|+|+|++||++ .+++.++++++.....+.+.++...........................   
T Consensus         2 ~~ivL~~p~~P~NlGai~Rta~afGv~-~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   77 (156)
T d1mxia_           2 LDIVLYEPEIPQNTGNIIRLCANTGFR-LHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTFEAFLESEKPKRLFA---   77 (156)
T ss_dssp             CEEEEESCCCHHHHHHHHHHHHHHTCE-EEEESSCSSCTTCHHHHTTSCCGGGSSSCEEESSHHHHHHHHCCSEEEE---
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHCCCC-EEEEECCCCCCCCHHHHHCCCCCCEEEEEEEECHHHHHHHHHHCCCEEE---
T ss_conf             399991898999199999999975995-9999158876311212202255413432453003666666430243022---


Q ss_pred             CCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC--CCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             23430341242035666553115881699994588842431000--1232220476787341016889999999999962
Q gi|254780904|r   95 RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS  172 (268)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~--~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~r~~  172 (268)
                               ................+.+||||+|++||++++++  .||.+++|||.+.++|||||+|++|+|||++||.
T Consensus        78 ---------~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~~~d~~v~IPm~g~~~SLNvs~A~aI~lyE~~RQ~  148 (156)
T d1mxia_          78 ---------LTTKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQL  148 (156)
T ss_dssp             ---------ECTTCSSBGGGSCCCTTEEEEECCTTTCSCHHHHTTSCGGGEEBCCCCTTCCCCCHHHHHHHHHHHHHHHT
T ss_pred             ---------EECCCCCCHHCCCCCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCEEEHHHHHHHHHHHHHHHC
T ss_conf             ---------20012231010245642179972577757999994255886998489999974079999999999999835


Q ss_pred             CCCC
Q ss_conf             1366
Q gi|254780904|r  173 IVSS  176 (268)
Q Consensus       173 ~~~~  176 (268)
                      ....
T Consensus       149 ~~~g  152 (156)
T d1mxia_         149 GYKG  152 (156)
T ss_dssp             TTTT
T ss_pred             CCCC
T ss_conf             9986


No 5  
>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=91.74  E-value=0.37  Score=24.23  Aligned_cols=78  Identities=21%  Similarity=0.231  Sum_probs=60.4

Q ss_pred             CCCCEEEEECCCCCCHH-HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCCCHHCCCCHHHHHHCCCCCEE
Q ss_conf             48968999428885479-99999999719980498088889999999998531-01344420013778998412553101
Q gi|254780904|r   12 AKGPVIILVDPQLGENI-GMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHFIYA   89 (268)
Q Consensus        12 ~~~~~vVLv~p~~p~Ni-GaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~~~~   89 (268)
                      -++..|++|+.  -.|+ -|.+.++.-||+ ++.++.|....+.++....+.. +........++.+..+++.+++.+..
T Consensus         2 l~gl~Ia~VGD--~~nv~~Sli~~l~~~g~-~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~   78 (163)
T d1pvva2           2 IKGVKVVYVGD--GNNVAHSLMIAGTKLGA-DVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYT   78 (163)
T ss_dssp             CTTCEEEEESC--CCHHHHHHHHHHHHTTC-EEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEE
T ss_pred             CCCCEEEEECC--CCHHHHHHHHHHHHCCC-EEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCEEEE
T ss_conf             58999999889--71899999999998599-4897365002787689999987510355508996598998614448854


Q ss_pred             EEC
Q ss_conf             201
Q gi|254780904|r   90 TTA   92 (268)
Q Consensus        90 ~~~   92 (268)
                      +.-
T Consensus        79 ~~~   81 (163)
T d1pvva2          79 DVW   81 (163)
T ss_dssp             CCC
T ss_pred             CCE
T ss_conf             112


No 6  
>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=88.90  E-value=0.62  Score=22.77  Aligned_cols=78  Identities=13%  Similarity=0.187  Sum_probs=56.4

Q ss_pred             CCCCEEEEECCCCCC-H-HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCCCHHCCCCHHHHHHCCCCCE
Q ss_conf             489689994288854-7-999999999719980498088889999999998531-0134442001377899841255310
Q gi|254780904|r   12 AKGPVIILVDPQLGE-N-IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHFIY   88 (268)
Q Consensus        12 ~~~~~vVLv~p~~p~-N-iGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~~~   88 (268)
                      -++..|..++  |.. | .=|.++++.-||+ +++++.|....+.++....+.. +........+..+.++++++.+.+.
T Consensus         3 l~~lkia~vG--D~~nnV~~Sli~~~~~~G~-~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVy   79 (185)
T d1dxha2           3 LHDISYAYLG--DARNNMGNSLLLIGAKLGM-DVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVH   79 (185)
T ss_dssp             GGGCEEEEES--CCSSHHHHHHHHHHHHTTC-EEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEE
T ss_pred             CCCCEEEEEC--CCCCHHHHHHHHHHHHCCC-EEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCEEE
T ss_conf             8888899986--7845599999999998599-799986679875137899998876415881899967465023145897


Q ss_pred             EEEC
Q ss_conf             1201
Q gi|254780904|r   89 ATTA   92 (268)
Q Consensus        89 ~~~~   92 (268)
                      .+.-
T Consensus        80 t~~w   83 (185)
T d1dxha2          80 TDVW   83 (185)
T ss_dssp             ECCC
T ss_pred             EEHH
T ss_conf             2211


No 7  
>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=87.37  E-value=0.8  Score=22.10  Aligned_cols=78  Identities=17%  Similarity=0.175  Sum_probs=57.7

Q ss_pred             CCCCEEEEECCCCCCHH-HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCCCHHCCCCHHHHHHCCCCCEE
Q ss_conf             48968999428885479-99999999719980498088889999999998531-01344420013778998412553101
Q gi|254780904|r   12 AKGPVIILVDPQLGENI-GMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHFIYA   89 (268)
Q Consensus        12 ~~~~~vVLv~p~~p~Ni-GaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~~~~   89 (268)
                      -+|..|.+|+.  ..|| -|.++++.-||+ +++++.|....+.++....... ..........+.++.+++.+.+.+..
T Consensus         2 l~gl~I~~vGD--~~nV~~Sli~~~~~~g~-~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~   78 (170)
T d1otha2           2 LKGLTLSWIGD--GNNILHSIMMSAAKFGM-HLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLIT   78 (170)
T ss_dssp             CTTCEEEEESC--SSHHHHHHHTTTGGGTC-EEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEE
T ss_pred             CCCCEEEEECC--CHHHHHHHHHHHHHCCC-EEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHEEE
T ss_conf             78999999837--56489999999998699-7999734324786688999999875169979998599999746123253


Q ss_pred             EEC
Q ss_conf             201
Q gi|254780904|r   90 TTA   92 (268)
Q Consensus        90 ~~~   92 (268)
                      ..-
T Consensus        79 ~~~   81 (170)
T d1otha2          79 DTW   81 (170)
T ss_dssp             CCS
T ss_pred             ECE
T ss_conf             010


No 8  
>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}
Probab=82.96  E-value=1.3  Score=20.81  Aligned_cols=79  Identities=18%  Similarity=0.183  Sum_probs=56.9

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHH-HCCCCCCCHHCCCCHHHHHHCCCCCEEEE
Q ss_conf             89689994288854799999999971998049808888999999999853-10134442001377899841255310120
Q gi|254780904|r   13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-NADCVIDSVRVFSNLKEAIADLHFIYATT   91 (268)
Q Consensus        13 ~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~-~a~~~~~~~~~~~~~~~a~~~~~~~~~~~   91 (268)
                      +|..|+.++--+-.=.-|.+.++.-||+ +++++.|....++++....+. .+........+..+.++++++.+.+..+.
T Consensus         2 ~g~ki~~vGD~~nnV~~Sli~~~~~~g~-~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~   80 (161)
T d1vlva2           2 KGVKVVFMGDTRNNVATSLMIACAKMGM-NFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV   80 (161)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHTTC-EEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHCCC-EEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHEECCC
T ss_conf             9999999927856899999999998599-799955303341125788888887503876389706787301210000010


Q ss_pred             C
Q ss_conf             1
Q gi|254780904|r   92 A   92 (268)
Q Consensus        92 ~   92 (268)
                      -
T Consensus        81 ~   81 (161)
T d1vlva2          81 W   81 (161)
T ss_dssp             C
T ss_pred             E
T ss_conf             0


No 9  
>d1k3ra2 c.116.1.2 (A:1-92,A:164-262) Hypothetical protein MTH1 (MT0001), dimerisation domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=80.22  E-value=1.6  Score=20.20  Aligned_cols=135  Identities=15%  Similarity=0.130  Sum_probs=62.2

Q ss_pred             EECCCCC----CHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHH-------------HH----------HHCC------
Q ss_conf             9428885----4799999999971998049808888999999999-------------85----------3101------
Q gi|254780904|r   19 LVDPQLG----ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-------------SS----------ANAD------   65 (268)
Q Consensus        19 Lv~p~~p----~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~-------------~a----------~~a~------   65 (268)
                      |.+.+++    .-+|-|||++.-|+++.+++.+..... +.+-++             ..          +|..      
T Consensus        15 l~~~~s~~~~t~~~g~iARa~~if~Vdeivv~dd~~~~-~~~~l~~iL~YletP~YLRK~lfp~~~~Lk~aGlLpPL~~p   93 (191)
T d1k3ra2          15 TAETGDLKIKTYKVVLIARAASIFGVKRIVIYHDDADG-EARFIRDILTYMDTPQYLRRKVFPIMRELKHVGILPPLRTG   93 (191)
T ss_dssp             TTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEECSSCC-CHHHHHHHHHHHHSCHHHHHHHCCCCGGGGGGGGCCCCCCC
T ss_pred             HCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             56688889999999999999982165579998279832-76999999998728900101237778662202588873378


Q ss_pred             -CCCC-CHHCCCCHHHHHHCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCE
Q ss_conf             -3444-20013778998412553101201122343034124203566655311588169999458884243100012322
Q gi|254780904|r   66 -CVID-SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI  143 (268)
Q Consensus        66 -~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~  143 (268)
                       .+.. .......+.  ..+.+..++|+.+.....       .............+.+.+|||.=..||..-  . .|..
T Consensus        94 ~hv~~~~~~~~~~l~--~~g~d~~I~TSr~G~~i~-------~~~~~~~~~~~~~~~~lvVFGgP~~Gl~~i--~-~D~~  161 (191)
T d1k3ra2          94 YEVLDTRRNLAESLK--TVGADVVVATSRNASPIT-------SILDEVKTRMRGAREAAILFGGPYKGLPEI--D-ADIW  161 (191)
T ss_dssp             CEEEEEEEEHHHHHH--HHCCSEEEEECTTSCBTT-------TSHHHHHHHHTTCSEEEEECCCSSSCCCSC--C-CSEE
T ss_pred             CCCCCCCCCCCCCCC--CCCCCEEEEECCCCCCHH-------HHHHHCCCCCCCCCEEEEEECCCCCCCHHH--H-CCEE
T ss_conf             642012464000221--279976998578986734-------642111355667873899989965686666--4-7848


Q ss_pred             -EECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             -204767873410168899999999
Q gi|254780904|r  144 -ISFPVNPLFPSLNISQAVLLMVWE  167 (268)
Q Consensus       144 -v~IPt~~~~~SLNLS~AvaIvlYE  167 (268)
                       -++|- ......=.=-|+.|.|--
T Consensus       162 vNt~P~-QGsrtIRTEEAv~itLa~  185 (191)
T d1k3ra2         162 VNTLPG-QCTETVRTEEAVLATLSV  185 (191)
T ss_dssp             EBSSTT-CSSSCCCHHHHHHHHHHH
T ss_pred             EECCCC-CCCCCEEHHHHHHHHHHH
T ss_conf             975899-887610088899999998


No 10 
>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]}
Probab=77.43  E-value=1.9  Score=19.66  Aligned_cols=54  Identities=20%  Similarity=0.196  Sum_probs=42.9

Q ss_pred             CCHH-HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEE
Q ss_conf             5479-9999999971998049808888999999999853101344420013778998412553101
Q gi|254780904|r   25 GENI-GMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYA   89 (268)
Q Consensus        25 p~Ni-GaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~   89 (268)
                      |.|| -|.++++..||+ ++.++.|+...++++..          ..+.++.+..+++++.+.+..
T Consensus        18 ~~~Va~S~i~~l~~~G~-~v~~~~P~~~~p~~~~~----------~~~~~~~d~~eav~~aDvI~t   72 (161)
T d1js1x2          18 PQAVPNSFAEWMNATDY-EFVITHPEGYELDPKFV----------GNARVEYDQMKAFEGADFIYA   72 (161)
T ss_dssp             CSHHHHHHHHHHHTSSS-EEEEECCTTCCCCHHHH----------TTCEEESCHHHHHTTCSEEEE
T ss_pred             CCHHHHHHHHHHHHCCC-EEEEECCCCCCCCHHHH----------CCCEEECCHHHHHCCCCCEEE
T ss_conf             65879999999998599-79997783138897996----------784176088998387761010


No 11 
>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}
Probab=75.07  E-value=2.2  Score=19.27  Aligned_cols=79  Identities=18%  Similarity=0.283  Sum_probs=56.8

Q ss_pred             CCCCEEEEECCCCCCHH-HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH-CCCCCCCHHCCCCHHHHHHCCCCCEE
Q ss_conf             48968999428885479-99999999719980498088889999999998531-01344420013778998412553101
Q gi|254780904|r   12 AKGPVIILVDPQLGENI-GMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHFIYA   89 (268)
Q Consensus        12 ~~~~~vVLv~p~~p~Ni-GaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~-a~~~~~~~~~~~~~~~a~~~~~~~~~   89 (268)
                      -+++.|+.++--. .|+ =|.+.+|.-||+ +++++.|....+.++....+.. +...-....++.+.+++..+.+.+..
T Consensus         3 ~~~l~i~~vGD~~-nnv~~Sli~~~~~~g~-~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt   80 (183)
T d1duvg2           3 FNEMTLVYAGDAR-NNMGNSMLEAAALTGL-DLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYT   80 (183)
T ss_dssp             GGGCEEEEESCTT-SHHHHHHHHHHHHHCC-EEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEE
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHHHHHCCC-EEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCCEEEE
T ss_conf             6787899993782-4899999999998499-7999713676311899999888887518852898422310356887999


Q ss_pred             EEC
Q ss_conf             201
Q gi|254780904|r   90 TTA   92 (268)
Q Consensus        90 ~~~   92 (268)
                      +.-
T Consensus        81 ~~w   83 (183)
T d1duvg2          81 DVW   83 (183)
T ss_dssp             CCS
T ss_pred             EEH
T ss_conf             731


No 12 
>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}
Probab=74.36  E-value=2.3  Score=19.16  Aligned_cols=79  Identities=11%  Similarity=0.135  Sum_probs=57.7

Q ss_pred             CCCCCCEEEEECCCCC-CHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCE
Q ss_conf             1348968999428885-479999999997199804980888899999999985310134442001377899841255310
Q gi|254780904|r   10 NSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY   88 (268)
Q Consensus        10 ~~~~~~~vVLv~p~~p-~NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~   88 (268)
                      ..-++..|+.+..-.- .++-+.+.++..||...++++.|....+.++....+...   .....++.+.++++.+.+.+.
T Consensus       150 g~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~---~~~~~~~~d~~~a~~~aDvvy  226 (310)
T d1tuga1         150 GRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEK---GIAWSLHSSIEEVMAEVDILY  226 (310)
T ss_dssp             SCSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTT---TCCEEEESCGGGTTTTCSEEE
T ss_pred             CCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHCCCCCCCC---CCEEEEEECHHHHCCCCCEEE
T ss_conf             87556638999526667316999999874667669996986126520103332232---203554301665445786565


Q ss_pred             EEE
Q ss_conf             120
Q gi|254780904|r   89 ATT   91 (268)
Q Consensus        89 ~~~   91 (268)
                      .+.
T Consensus       227 ~~~  229 (310)
T d1tuga1         227 MTR  229 (310)
T ss_dssp             ECC
T ss_pred             ECC
T ss_conf             214


No 13 
>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=66.69  E-value=3.4  Score=18.10  Aligned_cols=75  Identities=19%  Similarity=0.153  Sum_probs=54.3

Q ss_pred             CCCEEEEECCCCCCHH-HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEE
Q ss_conf             8968999428885479-999999997199804980888899999999985310134442001377899841255310120
Q gi|254780904|r   13 KGPVIILVDPQLGENI-GMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATT   91 (268)
Q Consensus        13 ~~~~vVLv~p~~p~Ni-GaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~   91 (268)
                      .+..|..++--.-.|+ -|.+.++..||+ +++++.|....+.++....+..   ......++.++++++.+.+.+..+.
T Consensus         3 ~gl~i~~vGD~~~srV~~Sli~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~---~~~~~~~~~d~~~av~~aDvvy~~~   78 (157)
T d1ml4a2           3 DGLKIGLLGDLKYGRTVHSLAEALTFYDV-ELYLISPELLRMPRHIVEELRE---KGMKVVETTTLEDVIGKLDVLYVTR   78 (157)
T ss_dssp             SSEEEEEESCTTTCHHHHHHHHHGGGSCE-EEEEECCGGGCCCHHHHHHHHH---TTCCEEEESCTHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCCC-CEEEECCCHHHCCHHHHHHHHH---HCCCCEEECCHHHHHCCCCEEEEEC
T ss_conf             89999998478667599999999996698-4799716211011677877776---4146414258878524381899643


No 14 
>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}
Probab=64.10  E-value=3.8  Score=17.79  Aligned_cols=65  Identities=11%  Similarity=0.171  Sum_probs=44.9

Q ss_pred             CCCEEEEECCCCCCHHH-HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEE
Q ss_conf             89689994288854799-99999997199804980888899999999985310134442001377899841255310120
Q gi|254780904|r   13 KGPVIILVDPQLGENIG-MVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATT   91 (268)
Q Consensus        13 ~~~~vVLv~p~~p~NiG-aiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~   91 (268)
                      ++..|.+++--.-+|+. |.+.++.-||++ ++++.|....+++.             ...++.++++++.+.+.+..+.
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~-~~i~~P~~~~~~~~-------------~~~~~~~~~ea~~~aDviy~~r   67 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGAR-VLFSGPSEWQDEEN-------------TFGTYVSMDEAVESSDVVMLLR   67 (151)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCCCC-CCCCCCCHHHCCCC-------------CEEEEEECHHCCCCCCEEEEEE
T ss_conf             899999983799897899999999975996-22138713211235-------------3368972001246676035667


No 15 
>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}
Probab=60.60  E-value=4.4  Score=17.40  Aligned_cols=76  Identities=12%  Similarity=0.133  Sum_probs=51.8

Q ss_pred             CCCEEEEECCCCCC-HHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEE
Q ss_conf             89689994288854-79999999997199804980888899999999985310134442001377899841255310120
Q gi|254780904|r   13 KGPVIILVDPQLGE-NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATT   91 (268)
Q Consensus        13 ~~~~vVLv~p~~p~-NiGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~   91 (268)
                      .+..|+.++--.=+ ..-|.+.++..||...++++.|....+.+.....+..   ......++.++++++.+.+.+..+.
T Consensus         3 ~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~---~~~~~~~~~d~~~a~~~aDvvy~~~   79 (160)
T d1ekxa2           3 DNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDE---KGIAWSLHSSIEEVMAEVDILYMTR   79 (160)
T ss_dssp             SSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHH---TTCCEEECSCSTTTGGGCSEEEECC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHH---HCCCCCCCCCHHHHHCCCCEEEEEC
T ss_conf             9999999867886689999999999829972886064012146899999865---2045631169999827685688623


No 16 
>d1nxza2 c.116.1.5 (A:74-247) Hypothetical protein HI0303 {Haemophilus influenzae [TaxId: 727]}
Probab=54.15  E-value=5.7  Score=16.72  Aligned_cols=143  Identities=13%  Similarity=0.081  Sum_probs=81.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCC-CC-CCCHH------------HHHHH-HHCCCCCCCHHCCCCHHHH
Q ss_conf             8999428885479999999997199804980888-89-99999------------99985-3101344420013778998
Q gi|254780904|r   16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DG-WPSEK------------ARSSS-ANADCVIDSVRVFSNLKEA   80 (268)
Q Consensus        16 ~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~-~~-~~~~~------------a~~~a-~~a~~~~~~~~~~~~~~~a   80 (268)
                      +-++..+-.+.+.=.+++-|.=.|++.++.+... +. .++.+            +..++ ......+.......+++++
T Consensus         7 i~l~~al~k~~~~~~ilqk~tELGV~~i~p~~s~rs~~~~~~~~~~~k~~r~~~i~~~A~eQsgr~~lP~i~~~~~l~~~   86 (174)
T d1nxza2           7 IHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDW   86 (174)
T ss_dssp             EEEEEECCSSSCHHHHHHHHHHTTCCEEEEEECTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCCEECCCEEHHHH
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHCCCEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf             89999512762599999999800803589615764532310667886089999999999873273325531410237788


Q ss_pred             HHCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHH
Q ss_conf             41255310120112234303412420356665531158816999945888424310001232220476787341016889
Q gi|254780904|r   81 IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA  160 (268)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~A  160 (268)
                      +...+..........          .............+++.++.|+|+ |.|.+|++.....=-.|.+=.-..|=.-+|
T Consensus        87 l~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~i~iiIGPEG-Gfs~~E~~~~~~~g~~~v~LG~~ILR~ETA  155 (174)
T d1nxza2          87 CAENDGALKLNLHPR----------AHYSIKTLPTIPAGGVRLLIGSEG-GLSAQEIAQTEQQGFTEILLGKRVLRTETA  155 (174)
T ss_dssp             HHCCSSCEEEEECTT----------CSCBGGGCCCCCTTCEEEEECCTT-CCCHHHHHHHHHTTCEEEBCCSSCCCHHHH
T ss_pred             HHHHCCHHHHHHHHH----------HHHHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHHHHCCCEEEECCCCCCHHHHH
T ss_conf             764010144432012----------344554320278874799974776-869899999997798686689981268769


Q ss_pred             HHHHHHHHH
Q ss_conf             999999999
Q gi|254780904|r  161 VLLMVWECM  169 (268)
Q Consensus       161 vaIvlYEl~  169 (268)
                      +..++--+.
T Consensus       156 ~i~als~l~  164 (174)
T d1nxza2         156 SLAAISALQ  164 (174)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
T ss_conf             999999999


No 17 
>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=51.19  E-value=6.3  Score=16.43  Aligned_cols=71  Identities=20%  Similarity=0.241  Sum_probs=46.8

Q ss_pred             CCCEEEEECCCCCCH---HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEE
Q ss_conf             896899942888547---99999999971998049808888999999999853101344420013778998412553101
Q gi|254780904|r   13 KGPVIILVDPQLGEN---IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYA   89 (268)
Q Consensus        13 ~~~~vVLv~p~~p~N---iGaiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~   89 (268)
                      .+..|..++  |..|   +-|.+.++.-||+.-.+++.|....+..... ...+     .....+.+.++++.+.+.+..
T Consensus         2 ~gl~i~~vG--D~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~-~~~~-----~~~~~~~d~~eai~~aDvvy~   73 (153)
T d1pg5a2           2 DGLVFALLG--DLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEIL-DELN-----YPVKEVENPFEVINEVDVLYV   73 (153)
T ss_dssp             TTCEEEEEE--CCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHH-TTCC-----SCEEEESCGGGTGGGCSEEEE
T ss_pred             CCCEEEEEC--CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHC-CCCC-----CEEEEEECHHHHHHCCCEEEE
T ss_conf             999999988--78765899999999998699159982565566421210-2489-----828999589999635986887


Q ss_pred             EE
Q ss_conf             20
Q gi|254780904|r   90 TT   91 (268)
Q Consensus        90 ~~   91 (268)
                      +.
T Consensus        74 ~~   75 (153)
T d1pg5a2          74 TR   75 (153)
T ss_dssp             EC
T ss_pred             EE
T ss_conf             44


No 18 
>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}
Probab=47.54  E-value=7.2  Score=16.07  Aligned_cols=80  Identities=16%  Similarity=0.173  Sum_probs=42.1

Q ss_pred             HCCCCCCEEEEECCCCCCHHHH-HHHHHHHCCC-CEEEECCCCCCCCCHHHHHHH---HH-CCCCCCCHHCCCCHHHHHH
Q ss_conf             2134896899942888547999-9999997199-804980888899999999985---31-0134442001377899841
Q gi|254780904|r    9 QNSAKGPVIILVDPQLGENIGM-VARAMWNFNL-TQLRLVNPRDGWPSEKARSSS---AN-ADCVIDSVRVFSNLKEAIA   82 (268)
Q Consensus         9 ~~~~~~~~vVLv~p~~p~NiGa-iaRa~~~fG~-~~L~lv~P~~~~~~~~a~~~a---~~-a~~~~~~~~~~~~~~~a~~   82 (268)
                      +...+.+-|..++   .||||+ ++-++...|+ ++|+|++-.    .+.+..-+   .| +........+.....+.++
T Consensus        15 ~~~~~~~KV~IIG---aG~VG~~~A~~l~~~~l~~ElvLiD~~----~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~   87 (160)
T d1i0za1          15 EATVPNNKITVVG---VGQVGMACAISILGKSLADELALVDVL----EDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTA   87 (160)
T ss_dssp             CCCCCSSEEEEEC---CSHHHHHHHHHHHHTTCCSEEEEECSC----HHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGT
T ss_pred             CCCCCCCEEEEEC---CCHHHHHHHHHHHHCCCCCEEEEEEEC----CCHHHHHHHHHHCCCCCCCCCEEEECCCHHHCC
T ss_conf             4457998089989---798999999999855977579998743----515577899886356236898598146544313


Q ss_pred             CCCCCEEEECCCC
Q ss_conf             2553101201122
Q gi|254780904|r   83 DLHFIYATTARNR   95 (268)
Q Consensus        83 ~~~~~~~~~~~~~   95 (268)
                      +++.++.+.+..+
T Consensus        88 ~adiVVitAg~~~  100 (160)
T d1i0za1          88 NSKIVVVTAGVRQ  100 (160)
T ss_dssp             TCSEEEECCSCCC
T ss_pred             CCCEEEEECCCCC
T ss_conf             3557998447765


No 19 
>d2o3aa1 c.116.1.8 (A:1-167) Uncharacterized protein AF0751 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=38.49  E-value=10  Score=15.20  Aligned_cols=55  Identities=20%  Similarity=0.202  Sum_probs=42.5

Q ss_pred             HHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             6665531158816999945888424310001232220476787341016889999999999
Q gi|254780904|r  109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM  169 (268)
Q Consensus       109 ~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaIvlYEl~  169 (268)
                      .........+.++.+|.|.|.  .+.|.-++|||-+.|--.|.-+.    .|.||+|-.|+
T Consensus        87 ~~~~~~Ir~~~~ilvVVGaeK--VP~evyelADyNVaVgNQPHSEV----AALAiFLDrl~  141 (167)
T d2o3aa1          87 PQKLEEIKRADKVLVVVGAEK--VPPEVYELCDLNISIGTQPHSEV----AALAVFLDRVL  141 (167)
T ss_dssp             HHHHHHHHTCSEEEEEEC------CTTHHHHSSEEEESSSSCCCHH----HHHHHHHHHHT
T ss_pred             HHHHHHCCCCCCEEEEECCCC--CCHHHHHHCCCCEECCCCCCHHH----HHHHHHHHHHH
T ss_conf             777643136897799989860--78999843464255078870899----99999999861


No 20 
>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}
Probab=37.44  E-value=10  Score=15.09  Aligned_cols=26  Identities=15%  Similarity=0.150  Sum_probs=19.1

Q ss_pred             CCHHHHH-HHHHHHCCCCEEEECCCCC
Q ss_conf             5479999-9999971998049808888
Q gi|254780904|r   25 GENIGMV-ARAMWNFNLTQLRLVNPRD   50 (268)
Q Consensus        25 p~NiGai-aRa~~~fG~~~L~lv~P~~   50 (268)
                      .|+||+. |-++..-++.+++|++...
T Consensus         9 aG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           9 AGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CCHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf             798999999999847835089885026


No 21 
>d2qwva1 c.116.1.7 (A:5-205) Uncharacterized protein VCA1059 {Vibrio cholerae [TaxId: 666]}
Probab=36.77  E-value=11  Score=15.03  Aligned_cols=53  Identities=23%  Similarity=0.083  Sum_probs=39.5

Q ss_pred             HHCCCCCEEEEEECCCCCCCCCCCCCCCC----EEECCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             31158816999945888424310001232----22047678734101688999999999996
Q gi|254780904|r  114 RIFSGQNVGIIFGRERWGLTNEEIALSNA----IISFPVNPLFPSLNISQAVLLMVWECMEN  171 (268)
Q Consensus       114 ~~~~~~~valVFG~E~~GLs~eel~~cd~----~v~IPt~~~~~SLNLS~AvaIvlYEl~r~  171 (268)
                      ......+.++|+| -..|++.+|.+.-..    .+++    .-.+|=-+|+++|+-|++=++
T Consensus       141 ~~~~~~~~~FILs-Dh~~~~~~e~~~L~~~g~~~iSL----Gp~~L~ashcI~ivH~~LDr~  197 (201)
T d2qwva1         141 DIKIGPNPCFILT-DHIPMPKKSGNSMKRLGVEKISL----GPKMLFASQCVTLIHNEIDHQ  197 (201)
T ss_dssp             TSCCCSSEEEEEC-C----------CTTTTTCEEEEC----CSSCCCHHHHHHHHHHHHHHH
T ss_pred             HCCCCCCCEEEEE-CCCCCCHHHHHHHHHCCCEEEEE----CCHHHHHHHHHHHHHHHHHHH
T ss_conf             3668899879970-89998978999887528704765----607887758999999986200


No 22 
>d1vhka2 c.116.1.5 (A:74-253) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]}
Probab=36.05  E-value=11  Score=14.95  Aligned_cols=120  Identities=12%  Similarity=0.134  Sum_probs=66.4

Q ss_pred             EEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCC-------C---HHH----HHHH-HHCCCCCCCHHCCCCHHHHHH
Q ss_conf             994288854799999999971998049808888999-------9---999----9985-310134442001377899841
Q gi|254780904|r   18 ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-------S---EKA----RSSS-ANADCVIDSVRVFSNLKEAIA   82 (268)
Q Consensus        18 VLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~~~~~-------~---~~a----~~~a-~~a~~~~~~~~~~~~~~~a~~   82 (268)
                      +....--+...-.+++-+.=.|++.++.+...-...       .   ++.    ..++ ......+.......++.++++
T Consensus        10 L~~~l~K~~~~~~ilqk~tELGV~~i~p~~s~rs~~~~~~~~~~~~~~r~~~i~~eA~eQsgr~~lP~i~~~~~l~~~l~   89 (180)
T d1vhka2          10 IASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQQLLQ   89 (180)
T ss_dssp             EEEECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEECCCBCHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf             99940376469999999983181558850035653223411456559999999999998643666543536788999997


Q ss_pred             CCCCCEEEEC-CCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf             2553101201-1223430341242035666553115881699994588842431000123
Q gi|254780904|r   83 DLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN  141 (268)
Q Consensus        83 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd  141 (268)
                      .......... .......   ................+++.++.|+|+ |.|.+|++...
T Consensus        90 ~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~  145 (180)
T d1vhka2          90 RMQDFDKCVVAYEESSKQ---GEISAFSAIVSSLPKGSSLLIVFGPEG-GLTEAEVERLT  145 (180)
T ss_dssp             HGGGSSEEEEECC-----------CHHHHHHHTCCTTCEEEEEECCTT-CCCHHHHHHHH
T ss_pred             HCCCCCCEEEEECCCCCC---CCHHHHHHHHHCCCCCCEEEEEECCCC-CCCHHHHHHHH
T ss_conf             553444189870333444---324678888750577870899966888-98999999999


No 23 
>d2qmma1 c.116.1.7 (A:95-288) Uncharacterized protein AF1056 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=35.62  E-value=11  Score=14.91  Aligned_cols=55  Identities=18%  Similarity=0.104  Sum_probs=39.0

Q ss_pred             HHCCCCCEEEEEECCCCCCCCCCCCCCCCEE--ECCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             3115881699994588842431000123222--047678734101688999999999996
Q gi|254780904|r  114 RIFSGQNVGIIFGRERWGLTNEEIALSNAII--SFPVNPLFPSLNISQAVLLMVWECMEN  171 (268)
Q Consensus       114 ~~~~~~~valVFG~E~~GLs~eel~~cd~~v--~IPt~~~~~SLNLS~AvaIvlYEl~r~  171 (268)
                      ........++|+| -..|++.++.+.-..+-  .|-.  .-.+|=-+|+++|+-|++=|.
T Consensus       136 ~~~~~~~~~FILs-Dh~~l~~~e~~~L~~~~~~~iSL--Gp~~L~a~hcI~ivh~~LDr~  192 (194)
T d2qmma1         136 NAQLPPNPLFVIG-DHEGLTEEQEKVVERYAALKLSL--SPLSLLAEQCVVIAHHHLDRL  192 (194)
T ss_dssp             GSCCCSSEEEEEE-CTTCCCHHHHHHHHTTCSEEEEC--CSSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEE-CCCCCCHHHHHHHHHCCCEEEEC--CCCCCCHHHHHHHHHHHHHHC
T ss_conf             2336999869975-89998867888776427714753--654225346696999988650


No 24 
>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}
Probab=34.38  E-value=11  Score=14.85  Aligned_cols=24  Identities=8%  Similarity=0.178  Sum_probs=16.0

Q ss_pred             CCHHHHHH-HHHHHCC-CCEEEECCC
Q ss_conf             54799999-9999719-980498088
Q gi|254780904|r   25 GENIGMVA-RAMWNFN-LTQLRLVNP   48 (268)
Q Consensus        25 p~NiGaia-Ra~~~fG-~~~L~lv~P   48 (268)
                      .||||+.+ =.+..-| +++|+|++.
T Consensus         9 aG~VG~~~a~~l~~~~~~~elvL~Di   34 (146)
T d1hyha1           9 LGNVGAAVAHGLIAQGVADDYVFIDA   34 (146)
T ss_dssp             CSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             68889999999996588866999840


No 25 
>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}
Probab=33.75  E-value=12  Score=14.72  Aligned_cols=80  Identities=16%  Similarity=0.139  Sum_probs=44.3

Q ss_pred             CCCCEEEEECCCCCCHHHHH-HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCC---CCCCCHHCCCCHHHHHHCCCCC
Q ss_conf             48968999428885479999-9999971998049808888999999999853101---3444200137789984125531
Q gi|254780904|r   12 AKGPVIILVDPQLGENIGMV-ARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD---CVIDSVRVFSNLKEAIADLHFI   87 (268)
Q Consensus        12 ~~~~~vVLv~p~~p~NiGai-aRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~---~~~~~~~~~~~~~~a~~~~~~~   87 (268)
                      ++.+-|..++   .|+||+. +-+++..|+.+++|++...+.....+.-. .++.   ............++++++++.+
T Consensus         5 ~k~~KI~IIG---aG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl-~~~~~~~~~~~~~~~~~~~~~~~~~adiV   80 (154)
T d1pzga1           5 QRRKKVAMIG---SGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDL-SHVTSVVDTNVSVRAEYSYEAALTGADCV   80 (154)
T ss_dssp             SCCCEEEEEC---CSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHH-HHHHHHTTCCCCEEEECSHHHHHTTCSEE
T ss_pred             CCCCCEEEEC---CCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH-HHHCCCCCCEEEEECCCCHHHHHCCCCEE
T ss_conf             5788489989---8888999999998379863999974166204699987-50111258746995267466664478768


Q ss_pred             EEEECCCC
Q ss_conf             01201122
Q gi|254780904|r   88 YATTARNR   95 (268)
Q Consensus        88 ~~~~~~~~   95 (268)
                      +.+.+..+
T Consensus        81 vitag~~~   88 (154)
T d1pzga1          81 IVTAGLTK   88 (154)
T ss_dssp             EECCSCSS
T ss_pred             EEECCCCC
T ss_conf             97515446


No 26 
>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}
Probab=31.73  E-value=13  Score=14.52  Aligned_cols=58  Identities=12%  Similarity=0.086  Sum_probs=36.4

Q ss_pred             CCCHHH-HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEECC
Q ss_conf             854799-9999999719980498088889999999998531013444200137789984125531012011
Q gi|254780904|r   24 LGENIG-MVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTAR   93 (268)
Q Consensus        24 ~p~NiG-aiaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   93 (268)
                      .-|||| .++|.+++||+. ++..+|.... ...   ...       ......++++.++.++.+......
T Consensus        56 G~G~IG~~va~~l~~fg~~-v~~~d~~~~~-~~~---~~~-------~~~~~~~l~~ll~~sD~i~~~~pl  114 (193)
T d1mx3a1          56 GLGRVGQAVALRAKAFGFN-VLFYDPYLSD-GVE---RAL-------GLQRVSTLQDLLFHSDCVTLHCGL  114 (193)
T ss_dssp             CCSHHHHHHHHHHHTTTCE-EEEECTTSCT-THH---HHH-------TCEECSSHHHHHHHCSEEEECCCC
T ss_pred             CCCCCCCCCEEEEECCCCC-EEECCCCCCC-CCH---HHH-------CCCCCCCHHHCCCCCCEEEEEECC
T ss_conf             3433553110000002321-0212673111-102---331-------540135365525567789984011


No 27 
>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}
Probab=30.66  E-value=13  Score=14.40  Aligned_cols=25  Identities=20%  Similarity=0.203  Sum_probs=17.8

Q ss_pred             CCHHHHH-HHHHHHCC-CCEEEECCCC
Q ss_conf             5479999-99999719-9804980888
Q gi|254780904|r   25 GENIGMV-ARAMWNFN-LTQLRLVNPR   49 (268)
Q Consensus        25 p~NiGai-aRa~~~fG-~~~L~lv~P~   49 (268)
                      .|+||+. +-.+...| +++|.|++-.
T Consensus         8 aG~VG~~la~~l~~~~l~~el~L~Di~   34 (142)
T d1guza1           8 AGNVGATTAFRLAEKQLARELVLLDVV   34 (142)
T ss_dssp             CSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CCHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf             698999999999847977369984265


No 28 
>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}
Probab=29.80  E-value=14  Score=14.31  Aligned_cols=65  Identities=6%  Similarity=0.124  Sum_probs=31.0

Q ss_pred             CCHHHHHH-HHHHHCCC-CEEEECCCCCCCCCHHHHHHHHH---CCCCCCCHHCCCCHHHHHHCCCCCEEEECC
Q ss_conf             54799999-99997199-80498088889999999998531---013444200137789984125531012011
Q gi|254780904|r   25 GENIGMVA-RAMWNFNL-TQLRLVNPRDGWPSEKARSSSAN---ADCVIDSVRVFSNLKEAIADLHFIYATTAR   93 (268)
Q Consensus        25 p~NiGaia-Ra~~~fG~-~~L~lv~P~~~~~~~~a~~~a~~---a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   93 (268)
                      .||||+.+ -++..-|+ ++|+|++-.    .+++...+..   +........+.....+++++++.++.+.+.
T Consensus         8 aG~VG~~~a~~l~~~~l~~el~L~Di~----~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~   77 (140)
T d1a5za1           8 LGRVGSSTAFALLMKGFAREMVLIDVD----KKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGV   77 (140)
T ss_dssp             CSHHHHHHHHHHHHHTCCSEEEEECSS----HHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCHHHHHHHHHHHHCCCCCEEEEEECC----CCCCCCHHCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCC
T ss_conf             698899999999857998779999545----4434102200102466045662127708874579889984245


No 29 
>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}
Probab=27.72  E-value=15  Score=14.08  Aligned_cols=67  Identities=12%  Similarity=0.051  Sum_probs=33.4

Q ss_pred             CCHHHHHH-HHHHHCCC-CEEEECCCCCCCCCHHHHHHH---HHC-CCCCCCHHCCCCHHHHHHCCCCCEEEECCCC
Q ss_conf             54799999-99997199-804980888899999999985---310-1344420013778998412553101201122
Q gi|254780904|r   25 GENIGMVA-RAMWNFNL-TQLRLVNPRDGWPSEKARSSS---ANA-DCVIDSVRVFSNLKEAIADLHFIYATTARNR   95 (268)
Q Consensus        25 p~NiGaia-Ra~~~fG~-~~L~lv~P~~~~~~~~a~~~a---~~a-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~   95 (268)
                      .||||+.+ =++..-|+ ++|+|++-.    ..++...+   .|+ .+............+++++++.++.+.+..+
T Consensus         9 aG~VG~~~a~~l~~~~l~~ElvL~D~~----~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~~~   81 (143)
T d1llda1           9 AGAVGSTLAFAAAQRGIAREIVLEDIA----KERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPRQ   81 (143)
T ss_dssp             CSHHHHHHHHHHHHTTCCSEEEEECSS----HHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCCC
T ss_pred             CCHHHHHHHHHHHHCCCCCEEEEEEEC----CCCCHHHHHHHHHCCCCCCCCEEECCCCHHHHHCCCEEEEECCCCC
T ss_conf             798899999999844878589999731----5531047777774223389851544789889517748999633656


No 30 
>d1e8ca2 c.59.1.1 (A:338-497) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}
Probab=26.03  E-value=16  Score=13.89  Aligned_cols=38  Identities=11%  Similarity=0.066  Sum_probs=31.6

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECC
Q ss_conf             13489689994288854799999999971998049808
Q gi|254780904|r   10 NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN   47 (268)
Q Consensus        10 ~~~~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~   47 (268)
                      ...++|.||+|--..|.-+-+++.+.+.+....+++|-
T Consensus         9 ~~~~~p~VIvDyAHNp~ai~~l~~~~k~~~~~~~~~V~   46 (160)
T d1e8ca2           9 TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVF   46 (160)
T ss_dssp             CCTTSCEEEEECCCSHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred             ECCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             65899889997899999999999986541345543244


No 31 
>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=25.21  E-value=17  Score=13.80  Aligned_cols=87  Identities=13%  Similarity=0.176  Sum_probs=49.1

Q ss_pred             CCCEEEEECCC-CCCHHHH-HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEE
Q ss_conf             89689994288-8547999-999999719980498088889999999998531013444200137789984125531012
Q gi|254780904|r   13 KGPVIILVDPQ-LGENIGM-VARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYAT   90 (268)
Q Consensus        13 ~~~~vVLv~p~-~p~NiGa-iaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~   90 (268)
                      +.-.|+++..+ +|++.|. ++|.+...|-..++.|||+..               .+.....|.++.+.-...+.++.+
T Consensus         7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~---------------~i~G~~~y~sl~dlp~~vDlvvi~   71 (129)
T d2csua1           7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEE---------------EVQGVKAYKSVKDIPDEIDLAIIV   71 (129)
T ss_dssp             SCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCS---------------EETTEECBSSTTSCSSCCSEEEEC
T ss_pred             CCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCC---------------CCCCEEEECCHHHCCCCCCEEEEE
T ss_conf             99859998347999870899999999749970899626762---------------308848665353357788667884


Q ss_pred             ECCCCCCCEEEECCCCHHHHHHHH-HCCCCCEEEEEE
Q ss_conf             011223430341242035666553-115881699994
Q gi|254780904|r   91 TARNRNNFKSVLAPKEAAIVLNER-IFSGQNVGIIFG  126 (268)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~valVFG  126 (268)
                      .            +.......... ...+-+.+++|.
T Consensus        72 v------------p~~~~~~~~~~~~~~g~~~~vi~s   96 (129)
T d2csua1          72 V------------PKRFVKDTLIQCGEKGVKGVVIIT   96 (129)
T ss_dssp             S------------CHHHHHHHHHHHHHHTCCEEEECC
T ss_pred             C------------CHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             4------------867708889999973998898713


No 32 
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=24.44  E-value=17  Score=13.71  Aligned_cols=62  Identities=19%  Similarity=0.191  Sum_probs=37.7

Q ss_pred             EEEEECCCCCCHHHH-HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEEEECC
Q ss_conf             899942888547999-999999719980498088889999999998531013444200137789984125531012011
Q gi|254780904|r   16 VIILVDPQLGENIGM-VARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTAR   93 (268)
Q Consensus        16 ~vVLv~p~~p~NiGa-iaRa~~~fG~~~L~lv~P~~~~~~~~a~~~a~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   93 (268)
                      .|..+.   -|+||. ++|-+.+||+ +++..+|..   .+..... .        ...+.+++++++.++.+......
T Consensus        46 ~vgiiG---~G~IG~~va~~~~~fg~-~v~~~d~~~---~~~~~~~-~--------~~~~~~l~ell~~sDiv~~~~Pl  108 (184)
T d1ygya1          46 TVGVVG---LGRIGQLVAQRIAAFGA-YVVAYDPYV---SPARAAQ-L--------GIELLSLDDLLARADFISVHLPK  108 (184)
T ss_dssp             EEEEEC---CSHHHHHHHHHHHTTTC-EEEEECTTS---CHHHHHH-H--------TCEECCHHHHHHHCSEEEECCCC
T ss_pred             EEEECC---CCCHHHHHHHHHHHCCC-EEEEECCCC---CHHHHHH-C--------CCEECCHHHHHHHCCEEEECCCC
T ss_conf             454203---53115788887640552-377406888---8667753-4--------84452589998559999973799


No 33 
>d1v6za2 c.116.1.5 (A:67-228) Hypothetical protein TTHA0657 (TT1575) {Thermus thermophilus [TaxId: 274]}
Probab=21.14  E-value=20  Score=13.30  Aligned_cols=136  Identities=21%  Similarity=0.167  Sum_probs=69.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCEEEECC-CCCC--CCCH----HHHHHHHH-----CCCCCCCHHCCCCHHHHHHC
Q ss_conf             89994288854799999999971998049808-8889--9999----99998531-----01344420013778998412
Q gi|254780904|r   16 VIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDG--WPSE----KARSSSAN-----ADCVIDSVRVFSNLKEAIAD   83 (268)
Q Consensus        16 ~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~-P~~~--~~~~----~a~~~a~~-----a~~~~~~~~~~~~~~~a~~~   83 (268)
                      +.+....--+.+.-.+++-|.-.|++.++.+. -++.  ..+.    +-.+.+..     ....+.......++.++...
T Consensus         7 i~L~~~l~K~~~~~~il~k~tELGV~~i~p~~sers~~k~~~~~k~~r~~~i~~~A~~Qs~r~~lP~i~~~~~l~~~~~~   86 (162)
T d1v6za2           7 VVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQV   86 (162)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHHTTCSEEEEEECTTCSCSCCCHHHHHHHHHHHHHHHHHTTCSSCCEECCCEEGGGCCCC
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf             89999314740899999999952818799997346302220213323779999999885144578710256588997552


Q ss_pred             CCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHH
Q ss_conf             55310120112234303412420356665531158816999945888424310001232220476787341016889999
Q gi|254780904|r   84 LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL  163 (268)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~valVFG~E~~GLs~eel~~cd~~v~IPt~~~~~SLNLS~AvaI  163 (268)
                      ......             ..... ..........+++.++.|+|+ |.|.+|++.....--.+.+=.-..|=.-+|+-.
T Consensus        87 ~~~~~~-------------~~~~~-~~~~~~~~~~~~i~i~IGPEG-Gfs~~Ei~~l~~~g~~~v~LG~~ILR~ETA~i~  151 (162)
T d1v6za2          87 AQGLVA-------------HVGAT-ARVREVLDPEKPLALAVGPEG-GFAEEEVALLEARGFTPVSLGRRILRAETAALA  151 (162)
T ss_dssp             SSEEEE-------------CTTCC-CCHHHHCCTTSCEEEEECCTT-CCCHHHHHHHHHHTEEEECCCSSCCCHHHHHHH
T ss_pred             CCHHHC-------------CCCCC-CCCHHHHCCCCCCEEEEECCC-CCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHH
T ss_conf             000001-------------22321-000010103676169982667-878999999998798898779982278859999


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780904|r  164 MVW  166 (268)
Q Consensus       164 vlY  166 (268)
                      ++-
T Consensus       152 als  154 (162)
T d1v6za2         152 LLA  154 (162)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             999


No 34 
>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.69  E-value=20  Score=13.24  Aligned_cols=37  Identities=16%  Similarity=-0.028  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9999999863169998999999999999998410342
Q gi|254780904|r  218 MLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS  254 (268)
Q Consensus       218 ~~~~lrrl~~R~~l~~~E~~~L~Gil~~l~~~~~~~~  254 (268)
                      -...||..|+|..++.+|+-.|-|-.+..........
T Consensus       171 ~a~~lrd~f~rMGl~d~E~VAL~Ggh~~g~~~~~~sg  207 (285)
T d2ccaa2         171 AEYMLLDKANLLTLSAPEMTVLVGGLRVLGANYKRLP  207 (285)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCSGGGCC
T ss_pred             HHHHHHHHHHHCCCCHHHHHEEECCCCHHHCCCCCCC
T ss_conf             1889999999705424534103345105330345211


No 35 
>d1alla_ a.1.1.3 (A:) Allophycocyanin alpha subunit {Spirulina platensis [TaxId: 118562]}
Probab=20.48  E-value=21  Score=13.21  Aligned_cols=48  Identities=21%  Similarity=0.216  Sum_probs=23.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             7873410168899999999999621366544433333468888999999999999
Q gi|254780904|r  149 NPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISL  203 (268)
Q Consensus       149 ~~~~~SLNLS~AvaIvlYEl~r~~~~~~~~~~~~~~~~a~~~~l~~~~~~l~~~l  203 (268)
                      ..-|.|||++.+..|..++.+|..-...       -.+....++...++|+...|
T Consensus       112 re~y~al~vp~~~~v~al~~mk~~~~~~-------ls~~~~~~~~~yfD~lI~~l  159 (160)
T d1alla_         112 REMYKSLGTPIEAIAEGVRAMKSVATSL-------LSGADAAEAGSYFDYLIGAM  159 (160)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHHHTT-------SCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHHHHHHC
T ss_conf             9999985999799999999999999976-------79999999888999999873


No 36 
>d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}
Probab=20.32  E-value=21  Score=13.19  Aligned_cols=36  Identities=17%  Similarity=0.288  Sum_probs=24.6

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             8968999428885479999999997199804980888
Q gi|254780904|r   13 KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR   49 (268)
Q Consensus        13 ~~~~vVLv~p~~p~NiGaiaRa~~~fG~~~L~lv~P~   49 (268)
                      +.+.|.++. -.-||+++++|+...+|++-.++-++.
T Consensus         3 ~m~~I~IiD-yg~gN~~Sv~~al~~lG~~~~ii~~~~   38 (232)
T d1jvna2           3 HMPVVHVID-VESGNLQSLTNAIEHLGYEVQLVKSPK   38 (232)
T ss_dssp             SSCEEEEEC-CSCSCCHHHHHHHHHTTCEEEEESSGG
T ss_pred             CCCEEEEEE-CCCCHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             899999997-898689999999998699769998842


Done!