RPSBLAST alignment of GI: 254780904 and protein with PDBid: 3ic6
>3ic6_A Putative methylase family protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.59A {Neisseria gonorrhoeae fa 1090} Length = 223
Score = 126 bits (317), Expect = 5e-30
Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 20/219 (9%)
Query: 1 MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS------ 54
MT P L + IIL NIG ARAM L +L +V P
Sbjct: 4 MTALKPALPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPP 63
Query: 55 -------------EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
E++ ++ A V+ + + + L EA+AD A T+R R +
Sbjct: 64 VFNPDDVQSFALPEESFILASGAADVLHNAEIVATLDEALADTTIACALTSRRREITAPL 123
Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
P++ L + G+ V ++FG E +GL+ EE+ N +++ NP + SLN++QAV
Sbjct: 124 QTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAV 183
Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLE 200
++ +E + S ++++++ AT ++ L ++E
Sbjct: 184 QVVCYEIF-SQTDSPMTHLQQEDHAATHEQIKGMLAHME 221